Spo10406.1 (mRNA)

Overview
NameSpo10406.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr5 : 18565421 .. 18568599 (+)
Sequence length952
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATAATCTTTCTCTCTCCTCTAAGTTCCTCCCTCTGTGAAACCCTAAAACTTGAAGACTTCAATGGCATACATTCACGGAGGCGGCTAATGTCTCGGCTATTGCACCATGACTCCAGCACGACCCTGCAAATACGGAAGGGTTTCGACGGGTGGTCATCTTGGGGGATCTGGTTGTTCGATTTGCGAGTGGAGGTTGACGAAGCGTTTATGTCGCCTCAGATTTCCCTCTCTCTCTCCTCTCCCATGTCAACGGTAATTCATTTCTGCTATTTCATATATTATCAATTTGATTCCAACACTAAATCAGTTGAATTTCTAATTGCGATTCTAAAAATTGAAGATTTAAACTTGATATAAATGTGTAGGAGATGGTAAATTGGTAATCTTGATATAAAAGTAGCTGCTGCTTATTATTTTAAGAACTTGATTCAACGAAATGTTCATGGAGAAGGTCGATCTGGCTTTTATAGTCAGGAATTTAAGGAGATGCTATTGAAAACTGGGCTTGGTATTGAACCCATTGAATTGAATTGTTTGATAATTTTTTCTCTAGGAAATTTGGGTTTGTTCTTAATTCGGAGTTGTTTGTGGGTGATGGGTTTTGTTTCGATAATTTGGAGATAGATGTAGAGCTCAAAATCCTAACAGAGGAATCTCTAGAGATTTATTTTCGTTTTGTGATTATTTTCAGGCATGTAGTTCTGCCATGGAAATTCCGCGACCTTCTACATGGAAATCGAAGCCTTCCAAACACAAAAGTGGTGAATTACTGCAATTAAGTTTATGATCTGATTAAGGTGATAATCAATTAAAACGCAATATAGTTTATTTTAATTTCTTGCATATTTCAGTTTAAGCGCACTGATTATGCTTTGTTAATTAGAACCCTATTAATTTCTTGATTCTTTAACCTTGGAATGTTTATGCTTTGTTTGAACTCTATTAATTTTTGGATTCTTTATTTTTGCACTGATTATGCTTTGTTAGAACTCTGTTAAGGGTTACAGTAATGTCGAATTTATCTTTATAGCCCAGACTCGAGAGTATGTGTATGAAATTGATAATTGTCCGAAATTTTAATTTGTTTATTTCCGGTAATTCAAGGAGGCTCGATGCGTACATATCCGTTATAAAGCTAGGGAGATCGAGGGTTCATGATTTTTTTGTTTGATTTGGTTAAATCTTAGAAATTTGATAAGTTATCTACAATTTTTTTTCCAGCTGCAATGGTACGCTATGAAATAACATGAAATTTCCTTGGCCTTCAATTCCTGCAGTTACTATACCGGTGAGAATATAATTCTTTTACCTTTTGCATTACTTATGTAAGTGTGCGGTTAATCCTGTCGCTCTTCCCTGAACAAATTCAGTTACTTTTGTAGATTGGATATGATGAAGCAGGGTTGCCTATCGGTTACAATTTATCGGAAAACCTTAGGCTGAAGCAACATTAATTCACATGGCTTCTGCAGTCCAGGTAAACCTTCATGTTTTCAAGAACCCGTCTTGAAAAACTGTTACGGTCTTGCCATGATTTTACCAAAATAACTTTCTCATAATTGTCTCCTTCCAAATTTATCTCTGAACTTTTGAATTAATTTTTTGCTTTCTGATTTTTTGCGTGATTATTTTCTTACCTTTGGTGTATTTATAAGGTGAATAAATTGTTCAAAGGTGCACCATTGCAGCATCTTAAGAATGTCTCAAAATCTGACTCCAAAAATGACATCTTACTTCGGAATATGCTTACAGGTCGATCGGACTTGGGATAATCATGCACTGAGAGAACCAGCTTTAGTTGCTCACTTAAAGTAATCCAGGATTTTTGGCTACGTTATTGAGAAACCCAATTTCTTCACTTTTACTTGGTTGGCAAAATTAGAATCACATACATCTTGGAGCATTCTGCAACTACTGGTAAACAATTCCTCACTCACAACTCATTACCTTCCATTTGACAAAATTTATGACACGGAGGATTTTATTTGAATCAATGCAAACTTCACTTAGTAAAAGGGCTCCGTTCACTTATATCAAGCTGAAAGTTTAATTTTGACACGAGTGAACTATGATTTTGCCGGGTTAGTATTATTTACTGTATTTTGCCGTTCAATTTCCCAATTTCAATTTTTAATGGGTGATTAATAGTTGTGAATATATGTGGTTAAGTAAATAATAATAACTCAATTGGTTTAATTTATTTATATGAATGATTGAATATAGACAGAAAAGGGTTTACTACTTCACATTAGAATCCTTATGTAATAGAGATGTTTCTACATTATAATCCATCTTATTTAGATCACAAAACAATCTGAATTAGCAGATCATACAGTCTCTAATAACCAAGTAGAAGCAAAACAATTGGGCTGTTGAATTCAAATATGATCATCCTAAATTTATTTGTTGCTTAAAGCCTACTCTTAATCCCTAGGCCGTTGTTTCTGATGTTTACTGTTCAATTTTTTACTGCATATTTGTTTCAATCATTTGCTGATGATAATTTCGGATTTTAGCCTAATATAAAATCCAATCTAAAAATAAAATTGAATAATGTAAACAGTTTAGCCTTAATTTTACTACCATTTGCTTACATTGAGAATATTGTACATCATGTTGGACCTGATGATCATCCTTAATTTAGGCTAAACAGGTAACTAAAACGGAATATATCAGTACTTGGTTTTGTGACAATATGTTTCAATCCTATCTCTTCATGTTGGTAATCTAAACCTCAATTAAGGTTATCATTAAGCAAACTGATAGGTCGTGATTAAAAAATTCTATCTAATTCATCTTTGAACTCAGCAGAAACACATTGCGTGCATATCTGGCTTTAAATATTACAAAACAGAGAAGAGCAAGGTTTTATTTTGTAATTTTTATTCTTTCTTCCTCTGTCTTTTTTCAAGGTTCTCAAAAGGGACATTCCATGGGAGACATACATGATGACCAAGTTGATCACTGGGACAACCCTTCAACTTTTAAGGCGTTATGACAAGAAACCTGAGAACTAGAGAGCTTCCTTGCTGGATGATGTAATTTTTCATCTTTGCTTCTTTCTCGAAGTATAGGCTGTTGAAGAATTTTAGCTACAATCTTTTTGTCAAATGCATCCAGTGACACAAAATCTCTTTTAATTTTGTTGAGATCTGTCATGACCTACCCCGTTCCTAA

mRNA sequence

CCATAATCTTTCTCTCTCCTCTAAGTTCCTCCCTCTGTGAAACCCTAAAACTTGAAGACTTCAATGGCATACATTCACGGAGGCGGCTAATGTCTCGGCTATTGCACCATGACTCCAGCACGACCCTGCAAATACGGAAGGGTTTCGACGGGTGGTCATCTTGGGGGATCTGGTTGTTCGATTTGCGAGTGGAGGTTGACGAAGCGTTTATGTCGCCTCAGATTTCCCTCTCTCTCTCCTCTCCCATGTCAACGGCATGTAGTTCTGCCATGGAAATTCCGCGACCTTCTACATGGAAATCGAAGCCTTCCAAACACAAAAGTGGTGAATTACTGCAATTAAGTTTATGATCTGATTAAGCTGCAATGGTACGCTATGAAATAACATGAAATTTCCTTGGCCTTCAATTCCTGCAGTTACTATACCGATTGGATATGATGAAGCAGGGTTGCCTATCGGTTACAATTTATCGGAAAACCTTAGGCTGAAGCAACATTAATTCACATGGCTTCTGCAGTCCAGGTCGATCGGACTTGGGATAATCATGCACTGAGAGAACCAGCTTTAGTTGCTCACTTAAAGTAATCCAGGATTTTTGGCTACGTTATTGAGAAACCCAATTTCTTCACTTTTACTTGGTTGGCAAAATTAGAATCACATACATCTTGGAGCATTCTGCAACTACTGGTTCTCAAAAGGGACATTCCATGGGAGACATACATGATGACCAAGTTGATCACTGGGACAACCCTTCAACTTTTAAGGCGTTATGACAAGAAACCTGAGAACTAGAGAGCTTCCTTGCTGGATGATGTAATTTTTCATCTTTGCTTCTTTCTCGAAGTATAGGCTGTTGAAGAATTTTAGCTACAATCTTTTTGTCAAATGCATCCAGTGACACAAAATCTCTTTTAATTTTGTTGAGATCTGTCATGACCTACCCCGTTCCTAA

Coding sequence (CDS)

ATGTCTCGGCTATTGCACCATGACTCCAGCACGACCCTGCAAATACGGAAGGGTTTCGACGGGTGGTCATCTTGGGGGATCTGGTTGTTCGATTTGCGAGTGGAGGTTGACGAAGCGTTTATGTCGCCTCAGATTTCCCTCTCTCTCTCCTCTCCCATGTCAACGGCATGTAGTTCTGCCATGGAAATTCCGCGACCTTCTACATGGAAATCGAAGCCTTCCAAACACAAAAGTGGTGAATTACTGCAATTAAGTTTATGA

Protein sequence

MSRLLHHDSSTTLQIRKGFDGWSSWGIWLFDLRVEVDEAFMSPQISLSLSSPMSTACSSAMEIPRPSTWKSKPSKHKSGELLQLSL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo10406Spo10406gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo10406.1Spo10406.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10406.1.exon.1Spo10406.1.exon.1exon
Spo10406.1.exon.2Spo10406.1.exon.2exon
Spo10406.1.exon.3Spo10406.1.exon.3exon
Spo10406.1.exon.4Spo10406.1.exon.4exon
Spo10406.1.exon.5Spo10406.1.exon.5exon
Spo10406.1.exon.6Spo10406.1.exon.6exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10406.1.utr5p.1Spo10406.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10406.1.CDS.1Spo10406.1.CDS.1CDS
Spo10406.1.CDS.2Spo10406.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10406.1.utr3p.1Spo10406.1.utr3p.1three_prime_UTR
Spo10406.1.utr3p.2Spo10406.1.utr3p.2three_prime_UTR
Spo10406.1.utr3p.3Spo10406.1.utr3p.3three_prime_UTR
Spo10406.1.utr3p.4Spo10406.1.utr3p.4three_prime_UTR
Spo10406.1.utr3p.5Spo10406.1.utr3p.5three_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Spo10406.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo10406.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo10406.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo10406.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top