Spo08490.1 (mRNA) | SpinachBase

Overview


Name	Spo08490.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Sel1 repeat protein
Location	chr5 : 25821429 .. 25825329 (-)
Sequence length	1052

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAATCACATAAAGAGTTCTGGTTGGATGTAAAACCTCAAAGTTGTCACTTTCTCAATTGGCAACTGGATATCTGTTGATTGTGACTCAGCTTTTTCCTGTACACGACGTCGTATGCCTCTAATTGACTGCAAATTGCAATTGTGTAAAACCCTTCTCAGCAAGAATCTCTCTCCTCCCACAGTTGCTTCCATTTCTCTCCCCCTTGTTTTTCTCTAATAATTTTTTTTTTAACGAAAAATCCAAAAACCAATTGGCAAAACGCAGACAATTAAGCAGTAAAACGGCATGCAAAACGGAAGTAGCAGCAGCAACGGCGTCGGAGAGGGGCGGAAGCCGTTGTCAGAGATGGTGGCTGACTGTGTGAGGCGGTGGTTTCAAGACACTCTCAAGGAGGCCAAAGGCGGCGACGTCAATATGCAAGTTCTTGTCAGTCAGATGTACTTCGCTGGTTATGGTGTTCCCAAAGATGACCAAAAGGTACCTTCTTGATTTTCTCTCTTTTTTTTTGGGAAAAATTTGGTTAATTTTGTGATTCTGCTGTTATTTACTGATTTTATGGGTGCCCGTCATTTTAGATGTGCTATATAGTGAAATTAATTCTGGGTTTTTGTTAATTTATGTAGTTAGTGATGGGTATAGTGATTCCAGGTGCCAAAGATGCCCAATTTTTTGGGATAAAATCAAGGTTTATTTTTGTGTTTATGGGGTTATTTGGTGATTTTTATGGATGCCCCATCATCTTATATTGTCTTAAGTTGATGTAGTTGATTGTGGATTTTTGTCAATTTATAGACTTGTTTGATGATGTTTGTGATTGCCCAGCTTTGCAATTTTCAATGAATTGAATGGATAAACTCTGAGTTTGTGGCAACTCTTTGAGTTGTATGGGAAAATCGAGTTCGCGGCTTGGGTTTGGTTGTTCTTTAATGGGTAGTATTGTGAATTTAATTGTGCTTGAGTAAAGAAAGCAAGATTTCTCTTTGGCTTGTATTCTTTGATTTGAATTAGAATCAGAAACAAGTTCCTCATTTGCTCCTTTATTGAGGCAGTAGCTGATACTTGATCGTGCTTCGACCCTTCGAGATGAATTGGTCGAATGATTAGGCTCTAAATTTAGGGTTGTGGTCATTTGTGTCACTTGCTTTACAATTGTAGAGATTCTTGCTTTTCTGTGTATAGTCCTTCTCTTCCCTAGTAATACACATATGTGAAGTTTGAGGTTCTTTTATTGGTAAGGAGTTCAACAAATTGAAGCAACTTAAATTGACGTCAATTAGTACTTGGTGTGATTTTATGAGTTTGCTTCTTGATAGCTTTGATTCGTGCCATCATTTTTGTGTTTGTTTGAGATCATGTTTCACTATTTATGGGTTTCAGGCAAGGTTATGGTTGTCAAGGGCTTCTAGGGTAAGAGCATCAGTTTGGAAAGTGGGTGAAAAGCATCCTGGTAATCTTCTTCTTCATCTCCTCCCTTAAAAAATGGAATTTTCTTTTTCTGGCCCAAAAGTATCAGAATGTTCTCATTCCTTATACTGGTTTCTGTTTGTCGTCATTATAGGCTATAATGCAAGTGATTCCGATTCTGATGAATTGATTGGTGAAGCACACTGACTATGTTATTTAGAGATTGGTAACTAAAGTGAGTTTTAACTACTTTGGCAATGTCCTTTAGTTGAGACTTCTCTATAGGTAGAAATATTCCTTTTTGTATTACATGTTTCGTATGCACACTTGTACTGTGATGGTGTGTGATATAACTCTAGTGCAAATGTGCAATTTTAATCATGATGTCTCATTAATTCCTTTTTATTTAAATTGACTGCATGTTTCTGTGGCTCCTAGTTCTCTTTGGTTTATTTATGTTTAGGCTCATTTGTCGACAATAATAACTTTTGGAAATCAAAACATTCAGTTAGAAACTATGTTACTTGGACTCTTCATTTTACCTTAACTCCTCAAGTACCCGTGTCGGATCCTCGACACTTGGGGACATGAGTATGGACACTGGAGACTTCATGAACTATTTTCACAGAATAGTCGAGTCGGACACTTGGACATGTCTGATGTGGGTACCAGACTCCGAGTAACATAACTTAGAAATGTAATGAAGTTTATTCTATCCAAACTTACACTTGGACATGGTATGGACAATTGACACTGGGCACTTCATGAACTTTTTTCATGGAATAGCTGAGTCGGGGGCACTTGGACATGTCCGACATGGGTACCCGAGTCTGAGTAGCAAAGTTTAGAAATGTAATGAAGTTATTCTATCCAAACTGAACCTTTACTTTACTCACCTCAAACCCTGCGATGAAAGGACGGAAACGAGGGTTAAGCGGGTAAGATAATGGTCTTGGAACATAGTGGAATGAGTCTAGTGTAGCCAGTACGTATGAATAAAGGGGGAGTCCTTGACGCCCTTACGAGGGCGTTGAGATGCTCTCCTCATGGCGCTCTTCATTGGATGGGACATTTGTAGAAGGGGGTGAAGGATAAACTTGGAAAATTGGTTGAAACGTAGGACTTAGGAGGCACGTGTGCTCTCCTGTGGGCTATGAGTATCCCCCAATGGCAGAAAGAAGGTTATCAATAGTGAGTGTGATACTTCAGTAGCTGGTGTAGCCGGTGTTGCACATTCTGAGTGAGTATGAAGTTCTTTTTTGGATCTTCTGATGGAAGAATTATAAATGACTGCCATGGCCGGAATGCCCATATCCTTTTATTATATTCTTTTGGAACTTGGAGATGAAATGTAAAAGCTACCTTCGGGGCTGAGAATGATATAGATTTGGGTCATGACAAGGAAAAGTTAGAGCGTGTGGAACTGTTGCTGATAGTTTTGAACAAATCAATAAAAAATACCGTGGCCATCGAATTTATCTCTGTCTTCATCTTAAGCAACAAAAGTTCTTTTGTTTCCAAGGTACTCCATTAGATTGAGGAATTGAGCATGTGGCATAGGGGAAACTGATGTGAAGAAGTTAATTAATCCGTTGGTGATGATTCTACAATTTCCTGTTGCCTGAAAATGGCAAGGACGACAAACGCCTCACTTCTGAAAACACCAGCTGACCAGCCTAGATGAAGATCGTCACCTCCTCCTATTAGATCATTTTATAGCCTTTATCGTGCTCAATCAAGAGCCAATTCTGACCTTTAGTCATTCATATATCTGTTATTCTCACGCTTCAGTCTGTAGGATCTTATAATTCTACTATTTGAACCCAGTCGGCCAGTCCTATTCTTCATAAGTCTGTAGGATCTTATAATTTTACTATTTGAACCCAGTCCTATTCTTCATACCCGATCAAAGCTCATATCTTGATCCTTTGCCTTTATATGTGGGGTGGAGACTATGCGGACTATTACTACAGCGGAGGCAGATGGTGCAACAGACACTTATTCAGCCCAAATCTAACTTGACCAATAAGTCTGCCATCTAACCAATGACCCTATCAGCAGAGCACAGTACTCTACCAGCAGATGCTGCACTGTTGAGTTGGTTTTGTCCAGCTAGCGACGTGTCCTGTGAGTGGCTAAGGAACTGTGACTACGAGTTAGGGACGGCAAGGGTACTTGTTGGTTTTGTGGTACACAGGTACTGCAAGGCGTCTTTGCAATGCGGACAGAATGGTTATTGTTTCTGATAGTTTGTTTTCCAAAATAATATGAGTAGACGAGACAATGTACCGGCAGAAAATCATTTGACTGTGAATGCTGGCTACAGTTTAGTGAAGGTTGTTGACAGATCGAGTAACACAAAATGAAATTGGAATACAAGACAATCTACCGTTTTATGGACTGTTGAGCATCTACAATGGCACCTACATATCTGAAGAGTCATATGAATGTGAATTCCCTTGATCATATTTCCAATGGCATTTGAGCAGTGGA

mRNA sequence

AAAGAATCACATAAAGAGTTCTGGTTGGATGTAAAACCTCAAAGTTGTCACTTTCTCAATTGGCAACTGGATATCTGTTGATTGTGACTCAGCTTTTTCCTGTACACGACGTCGTATGCCTCTAATTGACTGCAAATTGCAATTGTACAATTAAGCAGTAAAACGGCATGCAAAACGGAAGTAGCAGCAGCAACGGCGTCGGAGAGGGGCGGAAGCCGTTGTCAGAGATGGTGGCTGACTGTGTGAGGCGGTGGTTTCAAGACACTCTCAAGGAGGCCAAAGGCGGCGACGTCAATATGCAAGTTCTTGTCAGTCAGATGTACTTCGCTGGTTATGGTGTTCCCAAAGATGACCAAAAGGCAAGGTTATGGTTGTCAAGGGCTTCTAGGGTAAGAGCATCAGTTTGGAAAGTGGGTGAAAAGCATCCTGGCTATAATGCAAGTGATTCCGATTCTGATGAATTGATTGGTGAAGCACACTGACTATGTTATTTAGAGATTGGTAACTAAAACTATGCGGACTATTACTACAGCGGAGGCAGATGGTGCAACAGACACTTATTCAGCCCAAATCTAACTTGACCAATAAGTCTGCCATCTAACCAATGACCCTATCAGCAGAGCACAGTACTCTACCAGCAGATGCTGCACTGTTGAGTTGGTTTTGTCCAGCTAGCGACGTGTCCTGTGAGTGGCTAAGGAACTGTGACTACGAGTTAGGGACGGCAAGGGTACTTGTTGGTTTTGTGGTACACAGGTACTGCAAGGCGTCTTTGCAATGCGGACAGAATGGTTATTGTTTCTGATAGTTTGTTTTCCAAAATAATATGAGTAGACGAGACAATGTACCGGCAGAAAATCATTTGACTGTGAATGCTGGCTACAGTTTAGTGAAGGTTGTTGACAGATCGAGTAACACAAAATGAAATTGGAATACAAGACAATCTACCGTTTTATGGACTGTTGAGCATCTACAATGGCACCTACATATCTGAAGAGTCATATGAATGTGAATTCCCTTGATCATATTTCCAATGGCATTTGAGCAGTGGA

Coding sequence (CDS)

ATGCAAAACGGAAGTAGCAGCAGCAACGGCGTCGGAGAGGGGCGGAAGCCGTTGTCAGAGATGGTGGCTGACTGTGTGAGGCGGTGGTTTCAAGACACTCTCAAGGAGGCCAAAGGCGGCGACGTCAATATGCAAGTTCTTGTCAGTCAGATGTACTTCGCTGGTTATGGTGTTCCCAAAGATGACCAAAAGGCAAGGTTATGGTTGTCAAGGGCTTCTAGGGTAAGAGCATCAGTTTGGAAAGTGGGTGAAAAGCATCCTGGCTATAATGCAAGTGATTCCGATTCTGATGAATTGATTGGTGAAGCACACTGA

Protein sequence

MQNGSSSSNGVGEGRKPLSEMVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYFAGYGVPKDDQKARLWLSRASRVRASVWKVGEKHPGYNASDSDSDELIGEAH

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo08490	Spo08490	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo08490.1	Spo08490.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08490.1.utr5p.2	Spo08490.1.utr5p.2	five_prime_UTR
Spo08490.1.utr5p.1	Spo08490.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08490.1.CDS.3	Spo08490.1.CDS.3	CDS
Spo08490.1.CDS.2	Spo08490.1.CDS.2	CDS
Spo08490.1.CDS.1	Spo08490.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08490.1.utr3p.2	Spo08490.1.utr3p.2	three_prime_UTR
Spo08490.1.utr3p.1	Spo08490.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08490.1.exon.5	Spo08490.1.exon.5	exon
Spo08490.1.exon.4	Spo08490.1.exon.4	exon
Spo08490.1.exon.3	Spo08490.1.exon.3	exon
Spo08490.1.exon.2	Spo08490.1.exon.2	exon
Spo08490.1.exon.1	Spo08490.1.exon.1	exon

Homology

[Close]

BLAST of Spo08490.1 vs. NCBI nr
Match: gi|902153223|gb|KNA05679.1| (hypothetical protein SOVF_188080 [Spinacia oleracea])

HSP 1 Score: 216.5 bits (550), Expect = 2.200e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1

		  
Query: 1   MQNGSSSSNGVGEGRKPLSEMVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYFAGYGVPK 60
           MQNGSSSSNGVGEGRKPLSEMVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYFAGYGVPK
Sbjct: 1   MQNGSSSSNGVGEGRKPLSEMVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYFAGYGVPK 60

Query: 61  DDQKARLWLSRASRVRASVWKVGEKHPGYNASDSDSDELIGEAH 105
           DDQKARLWLSRASRVRASVWKVGEKHPGYNASDSDSDELIGEAH
Sbjct: 61  DDQKARLWLSRASRVRASVWKVGEKHPGYNASDSDSDELIGEAH 104

[Close]

BLAST of Spo08490.1 vs. NCBI nr
Match: gi|731344751|ref|XP_010683583.1| (PREDICTED: uncharacterized protein LOC104898233 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 189.5 bits (480), Expect = 2.900e-45
Identity = 90/103 (87.38%), Postives = 97/103 (94.17%), Query Frame = 1

		  
Query: 1   MQNGSSSSNGVGEGRKPLSEMVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYFAGYGVPK 60
           MQNGSSSSNG GEGRK LSE+VADCVRRWFQDTLKEAKGGDVNMQVLVSQMY AGYGVPK
Sbjct: 1   MQNGSSSSNGGGEGRKALSEVVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYTAGYGVPK 60

Query: 61  DDQKARLWLSRASRVRASVWKVGEKHPGYNASDSDSDELIGEA 104
           D QKA+ W+SRASRVR+SVW+V EKHPGYNASDSDSDEL+G+A
Sbjct: 61  DTQKAKAWMSRASRVRSSVWRVSEKHPGYNASDSDSDELMGDA 103

[Close]

BLAST of Spo08490.1 vs. NCBI nr
Match: gi|1012115813|ref|XP_015961114.1| (PREDICTED: uncharacterized protein LOC107485106 [Arachis duranensis])

HSP 1 Score: 160.2 bits (404), Expect = 1.900e-36
Identity = 72/94 (76.60%), Postives = 86/94 (91.49%), Query Frame = 1

		  
Query: 7   SSNGV-GEGRKPLSEMVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYFAGYGVPKDDQKA 66
           SS+G+   GR PLS +VADCV+RWF+DTLKEAK GD+NMQVLV QMY++GYGVP+DDQK 
Sbjct: 3   SSSGIESNGRVPLSGVVADCVKRWFRDTLKEAKAGDINMQVLVGQMYYSGYGVPRDDQKG 62

Query: 67  RLWLSRASRVRASVWKVGEKHPGYNASDSDSDEL 100
           ++WL+RASRVR+SVWKVG+KHPGYNASDSDSDEL
Sbjct: 63  KIWLTRASRVRSSVWKVGDKHPGYNASDSDSDEL 96

[Close]

BLAST of Spo08490.1 vs. NCBI nr
Match: gi|567873845|ref|XP_006429512.1| (hypothetical protein CICLE_v10013155mg [Citrus clementina])

HSP 1 Score: 158.7 bits (400), Expect = 5.600e-36
Identity = 75/104 (72.12%), Postives = 88/104 (84.62%), Query Frame = 1

		  
Query: 3   NGSSSSNGVGEG---RKPLSEMVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYFAGYGVP 62
           NGSSS +G       R PLSE+V+DCV+RWF+DTLKEAKGGD+NMQVLV QMYF+GYGV 
Sbjct: 12  NGSSSVSGNSSSETTRVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVA 71

Query: 63  KDDQKARLWLSRASRVRASVWKVGEKHPGYNASDSDSDELIGEA 104
           +D QK R+W+SRASR R+SVWKVGEKHPGYNASDSDSDE+  E+
Sbjct: 72  RDAQKGRIWISRASRTRSSVWKVGEKHPGYNASDSDSDEMKEES 115

[Close]

BLAST of Spo08490.1 vs. NCBI nr
Match: gi|388502396|gb|AFK39264.1| (unknown [Lotus japonicus])

HSP 1 Score: 157.5 bits (397), Expect = 1.200e-35
Identity = 72/95 (75.79%), Postives = 82/95 (86.32%), Query Frame = 1

		  
Query: 5   SSSSNGVGEGRKPLSEMVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYFAGYGVPKDDQK 64
           SSS      GR PLSE+VADCV+RWF+DTLKEAKGGD+NMQVLV QMY  GYGVPKD QK
Sbjct: 3   SSSGRPTSNGRVPLSEVVADCVKRWFKDTLKEAKGGDINMQVLVGQMYCTGYGVPKDAQK 62

Query: 65  ARLWLSRASRVRASVWKVGEKHPGYNASDSDSDEL 100
            R+WL++ASRVR+SVWKVG+K PGYNASDSDSD+L
Sbjct: 63  GRIWLTKASRVRSSVWKVGDKRPGYNASDSDSDDL 97

[Close]

BLAST of Spo08490.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEI6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_188080 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.600e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1

		  
Query: 1   MQNGSSSSNGVGEGRKPLSEMVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYFAGYGVPK 60
           MQNGSSSSNGVGEGRKPLSEMVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYFAGYGVPK
Sbjct: 1   MQNGSSSSNGVGEGRKPLSEMVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYFAGYGVPK 60

Query: 61  DDQKARLWLSRASRVRASVWKVGEKHPGYNASDSDSDELIGEAH 105
           DDQKARLWLSRASRVRASVWKVGEKHPGYNASDSDSDELIGEAH
Sbjct: 61  DDQKARLWLSRASRVRASVWKVGEKHPGYNASDSDSDELIGEAH 104

[Close]

BLAST of Spo08490.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C2Z1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g157920 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.100e-45
Identity = 90/103 (87.38%), Postives = 97/103 (94.17%), Query Frame = 1

		  
Query: 1   MQNGSSSSNGVGEGRKPLSEMVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYFAGYGVPK 60
           MQNGSSSSNG GEGRK LSE+VADCVRRWFQDTLKEAKGGDVNMQVLVSQMY AGYGVPK
Sbjct: 1   MQNGSSSSNGGGEGRKALSEVVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYTAGYGVPK 60

Query: 61  DDQKARLWLSRASRVRASVWKVGEKHPGYNASDSDSDELIGEA 104
           D QKA+ W+SRASRVR+SVW+V EKHPGYNASDSDSDEL+G+A
Sbjct: 61  DTQKAKAWMSRASRVRSSVWRVSEKHPGYNASDSDSDELMGDA 103

[Close]

BLAST of Spo08490.1 vs. UniProtKB/TrEMBL
Match: V4S5N3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013155mg PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.900e-36
Identity = 75/104 (72.12%), Postives = 88/104 (84.62%), Query Frame = 1

		  
Query: 3   NGSSSSNGVGEG---RKPLSEMVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYFAGYGVP 62
           NGSSS +G       R PLSE+V+DCV+RWF+DTLKEAKGGD+NMQVLV QMYF+GYGV 
Sbjct: 12  NGSSSVSGNSSSETTRVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVA 71

Query: 63  KDDQKARLWLSRASRVRASVWKVGEKHPGYNASDSDSDELIGEA 104
           +D QK R+W+SRASR R+SVWKVGEKHPGYNASDSDSDE+  E+
Sbjct: 72  RDAQKGRIWISRASRTRSSVWKVGEKHPGYNASDSDSDEMKEES 115

[Close]

BLAST of Spo08490.1 vs. UniProtKB/TrEMBL
Match: A0A067FJC6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033594mg PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.900e-36
Identity = 75/104 (72.12%), Postives = 88/104 (84.62%), Query Frame = 1

		  
Query: 3   NGSSSSNGVGEG---RKPLSEMVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYFAGYGVP 62
           NGSSS +G       R PLSE+V+DCV+RWF+DTLKEAKGGD+NMQVLV QMYF+GYGV 
Sbjct: 12  NGSSSVSGNSSSETTRVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVA 71

Query: 63  KDDQKARLWLSRASRVRASVWKVGEKHPGYNASDSDSDELIGEA 104
           +D QK R+W+SRASR R+SVWKVGEKHPGYNASDSDSDE+  E+
Sbjct: 72  RDAQKGRIWISRASRTRSSVWKVGEKHPGYNASDSDSDEMKEES 115

[Close]

BLAST of Spo08490.1 vs. UniProtKB/TrEMBL
Match: I3SG72_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 8.600e-36
Identity = 72/95 (75.79%), Postives = 82/95 (86.32%), Query Frame = 1

		  
Query: 5   SSSSNGVGEGRKPLSEMVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYFAGYGVPKDDQK 64
           SSS      GR PLSE+VADCV+RWF+DTLKEAKGGD+NMQVLV QMY  GYGVPKD QK
Sbjct: 3   SSSGRPTSNGRVPLSEVVADCVKRWFKDTLKEAKGGDINMQVLVGQMYCTGYGVPKDAQK 62

Query: 65  ARLWLSRASRVRASVWKVGEKHPGYNASDSDSDEL 100
            R+WL++ASRVR+SVWKVG+K PGYNASDSDSD+L
Sbjct: 63  GRIWLTKASRVRSSVWKVGDKRPGYNASDSDSDDL 97

[Close]

BLAST of Spo08490.1 vs. TAIR (Arabidopsis)
Match: AT5G05360.1 (unknown protein)

HSP 1 Score: 131.7 bits (330), Expect = 2.600e-31
Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = 1

		  
Query: 3   NGSSSSNGVGEGRKPLSEMVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYFAGYGVPKDD 62
           N + +S      R PL+++V DCVRRWFQDTLKEAK GDV MQVLV QMY +GYG+PKD+
Sbjct: 65  NPAPASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDE 124

Query: 63  QKARLWLSRASRVRASVWKVGEKHPGYNASDSDSDE 99
            K R W+++ASR R+S W+V +K PGYNASDSDS++
Sbjct: 125 NKGRAWINKASRTRSSAWQVSDKPPGYNASDSDSND 160

[Close]

BLAST of Spo08490.1 vs. TAIR (Arabidopsis)
Match: AT2G38450.1 (Sel1-like (InterPro:IPR006597))

HSP 1 Score: 129.8 bits (325), Expect = 9.800e-31
Identity = 59/96 (61.46%), Postives = 78/96 (81.25%), Query Frame = 1

		  
Query: 5   SSSSNGVGEGRK---PLSEMVADCVRRWFQDTLKEAKGGDVNMQVLVSQMYFAGYGVPKD 64
           SSS+    E  +   PLS +V+DC +RWF+DTL+EAK G++ MQVL+ QMY++GYGVPKD
Sbjct: 41  SSSTTTTSETTRRFVPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKD 100

Query: 65  DQKARLWLSRASRVRASVWKVGEKHPGYNASDSDSD 98
            +K RLW+++ASRVR+SVWKV +K PGYNASDSDS+
Sbjct: 101 ARKGRLWITKASRVRSSVWKVIDKRPGYNASDSDSE 136

The following BLAST results are available for this feature:

BLAST of Spo08490.1 vs. NCBI nr
BLAST of Spo08490.1 vs. UniProtKB/TrEMBL
BLAST of Spo08490.1 vs. ExPASy Swiss-Prot
BLAST of Spo08490.1 vs. TAIR (Arabidopsis)

BLAST of Spo08490.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902153223\|gb\|KNA05679.1\|	2.2e-53	100.	hypothetical protein SOVF_1880...	[more]
gi\|731344751\|ref\|XP_010683583.1\|	2.9e-45	87.3	PREDICTED: uncharacterized pro...	[more]
gi\|1012115813\|ref\|XP_015961114.1\|	1.9e-36	76.6	PREDICTED: uncharacterized pro...	[more]
gi\|567873845\|ref\|XP_006429512.1\|	5.6e-36	72.1	hypothetical protein CICLE_v10...	[more]
gi\|388502396\|gb\|AFK39264.1\|	1.2e-35	75.7	unknown [Lotus japonicus]	[more]

BLAST of Spo08490.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QEI6_SPIOL	1.6e-53	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C2Z1_BETVU	2.1e-45	87.3	Uncharacterized protein OS=Bet...	[more]
V4S5N3_9ROSI	3.9e-36	72.1	Uncharacterized protein OS=Cit...	[more]
A0A067FJC6_CITSI	3.9e-36	72.1	Uncharacterized protein OS=Cit...	[more]
I3SG72_LOTJA	8.6e-36	75.7	Uncharacterized protein OS=Lot...	[more]

BLAST of Spo08490.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo08490.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT5G05360.1	2.6e-31	61.4	unknown protein	[more]
AT2G38450.1	9.8e-31	61.4	Sel1-like (InterPro:IPR006597)	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 35..73 score: 1.
None	No IPR available	PANTHER	PTHR36792	FAMILY NOT NAMED	coord: 15..98 score: 3.5
None	No IPR available	PANTHER	PTHR36792:SF2	SUBFAMILY NOT NAMED	coord: 15..98 score: 3.5
None	No IPR available	unknown	SSF81901	HCP-like	coord: 34..73 score: 8.

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding