Spo15388.1 (mRNA)

Overview
NameSpo15388.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 10274625 .. 10274873 (+)
Sequence length249
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGACCAAGTGTGTACTAGTACTACTTCGTGCTGGCACCAGCCTTGGCAGGATGCAACCATACTATCGCCACCCTCCTACGTTGCCGCGGCGGCCACCCTTTCGAGCTCCTCCGCCACCTCGAGTGTTATTGATACCACCAGCAACGGCGAGGTTAAGAGGGCTAGGGCGGCCCCACCGGCGGCTCTTAGAGATAAGGACTCTTTCCGGACTGCTATGTTCTTGAGCTGCTGGACGTGCTCCTAG

mRNA sequence

ATGTATGACCAAGTGTGTACTAGTACTACTTCGTGCTGGCACCAGCCTTGGCAGGATGCAACCATACTATCGCCACCCTCCTACGTTGCCGCGGCGGCCACCCTTTCGAGCTCCTCCGCCACCTCGAGTGTTATTGATACCACCAGCAACGGCGAGGTTAAGAGGGCTAGGGCGGCCCCACCGGCGGCTCTTAGAGATAAGGACTCTTTCCGGACTGCTATGTTCTTGAGCTGCTGGACGTGCTCCTAG

Coding sequence (CDS)

ATGTATGACCAAGTGTGTACTAGTACTACTTCGTGCTGGCACCAGCCTTGGCAGGATGCAACCATACTATCGCCACCCTCCTACGTTGCCGCGGCGGCCACCCTTTCGAGCTCCTCCGCCACCTCGAGTGTTATTGATACCACCAGCAACGGCGAGGTTAAGAGGGCTAGGGCGGCCCCACCGGCGGCTCTTAGAGATAAGGACTCTTTCCGGACTGCTATGTTCTTGAGCTGCTGGACGTGCTCCTAG

Protein sequence

MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAPPAALRDKDSFRTAMFLSCWTCS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo15388Spo15388gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo15388.1Spo15388.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo15388.1.exon.1Spo15388.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo15388.1.CDS.1Spo15388.1.CDS.1CDS


Homology
[Close]
BLAST of Spo15388.1 vs. NCBI nr
Match: gi|902168433|gb|KNA07502.1| (hypothetical protein SOVF_171240 [Spinacia oleracea])

HSP 1 Score: 164.9 bits (416), Expect = 6.100e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

		  

Query: 1  MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP 60
          MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP
Sbjct: 1  MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP 60

Query: 61 PAALRDKDSFRTAMFLSCWTCS 83
          PAALRDKDSFRTAMFLSCWTCS
Sbjct: 61 PAALRDKDSFRTAMFLSCWTCS 82
[Close]
BLAST of Spo15388.1 vs. NCBI nr
Match: gi|870852561|gb|KMT04476.1| (hypothetical protein BVRB_8g181450 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 67.4 bits (163), Expect = 1.300e-8
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 1 

		  

Query: 1  MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP 60
          M++Q   S++S W +PWQ AT  S       A T  SS AT S+ DT + GEV   RA  
Sbjct: 1  MHEQA--SSSSFW-EPWQRATTSSTSVATTTATTTPSSFATPSITDTANKGEVA-PRAGC 60

Query: 61 PAALRDKDSFRTAMFLSCWTCS 83
           A +RD+D+FRTAMFLSCWTCS
Sbjct: 61 KAVVRDQDAFRTAMFLSCWTCS 78
[Close]
BLAST of Spo15388.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJT1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_171240 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.300e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

		  

Query: 1  MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP 60
          MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP
Sbjct: 1  MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP 60

Query: 61 PAALRDKDSFRTAMFLSCWTCS 83
          PAALRDKDSFRTAMFLSCWTCS
Sbjct: 61 PAALRDKDSFRTAMFLSCWTCS 82
[Close]
BLAST of Spo15388.1 vs. UniProtKB/TrEMBL
Match: A0A0J8ENB0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g181450 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.300e-9
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 1 

		  

Query: 1  MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP 60
          M++Q   S++S W +PWQ AT  S       A T  SS AT S+ DT + GEV   RA  
Sbjct: 1  MHEQA--SSSSFW-EPWQRATTSSTSVATTTATTTPSSFATPSITDTANKGEVA-PRAGC 60

Query: 61 PAALRDKDSFRTAMFLSCWTCS 83
           A +RD+D+FRTAMFLSCWTCS
Sbjct: 61 KAVVRDQDAFRTAMFLSCWTCS 78
The following BLAST results are available for this feature:
BLAST of Spo15388.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902168433|gb|KNA07502.1|6.1e-38100.hypothetical protein SOVF_1712... [more]
gi|870852561|gb|KMT04476.1|1.3e-851.2hypothetical protein BVRB_8g18... [more]
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BLAST of Spo15388.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9QJT1_SPIOL4.3e-38100.Uncharacterized protein OS=Spi... [more]
A0A0J8ENB0_BETVU9.3e-951.2Uncharacterized protein OS=Bet... [more]
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BLAST of Spo15388.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15388.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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