Spo07723.1 (mRNA) | SpinachBase

Overview


Name	Spo07723.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr6 : 28413865 .. 28414266 (-)
Sequence length	402

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAACCAACGGAGGCAGAAGTCACAGAGGCCAATCATTTCACAAGTACCGGAAGACTTCATGAGGGGCCTACAAGAAGGCTCACCAACTTTGCCATTTCCATTAAGAAATGTACAAAAAGCTTCTAGAAAAGTCATGAAGAACGATGCATCAATGTTATACCGACCTCAAGAGAGATCAAAATCCTCAGCACAAATAGAATCCTCTACTGCTGCAGATGAGTATATGGCACTTAAACGTAAATACTTAATGCTGGAGGTAGAGAGCTGCGATTTGGGAAAGGAGTTGAGAGAGTCTGAAGACGAGATTAAAAACCTTGAAGATGAGAAGCTTGAACTCTTGGATCAACTGGTGGTGTTGGAAGGTCTGGTAGATCCGTCGGAAGTGCAGAATCAGTAG

mRNA sequence

ATGATGAACCAACGGAGGCAGAAGTCACAGAGGCCAATCATTTCACAAGTACCGGAAGACTTCATGAGGGGCCTACAAGAAGGCTCACCAACTTTGCCATTTCCATTAAGAAATGTACAAAAAGCTTCTAGAAAAGTCATGAAGAACGATGCATCAATGTTATACCGACCTCAAGAGAGATCAAAATCCTCAGCACAAATAGAATCCTCTACTGCTGCAGATGAGTATATGGCACTTAAACGTAAATACTTAATGCTGGAGGTAGAGAGCTGCGATTTGGGAAAGGAGTTGAGAGAGTCTGAAGACGAGATTAAAAACCTTGAAGATGAGAAGCTTGAACTCTTGGATCAACTGGTGGTGTTGGAAGGTCTGGTAGATCCGTCGGAAGTGCAGAATCAGTAG

Coding sequence (CDS)

ATGATGAACCAACGGAGGCAGAAGTCACAGAGGCCAATCATTTCACAAGTACCGGAAGACTTCATGAGGGGCCTACAAGAAGGCTCACCAACTTTGCCATTTCCATTAAGAAATGTACAAAAAGCTTCTAGAAAAGTCATGAAGAACGATGCATCAATGTTATACCGACCTCAAGAGAGATCAAAATCCTCAGCACAAATAGAATCCTCTACTGCTGCAGATGAGTATATGGCACTTAAACGTAAATACTTAATGCTGGAGGTAGAGAGCTGCGATTTGGGAAAGGAGTTGAGAGAGTCTGAAGACGAGATTAAAAACCTTGAAGATGAGAAGCTTGAACTCTTGGATCAACTGGTGGTGTTGGAAGGTCTGGTAGATCCGTCGGAAGTGCAGAATCAGTAG

Protein sequence

MMNQRRQKSQRPIISQVPEDFMRGLQEGSPTLPFPLRNVQKASRKVMKNDASMLYRPQERSKSSAQIESSTAADEYMALKRKYLMLEVESCDLGKELRESEDEIKNLEDEKLELLDQLVVLEGLVDPSEVQNQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo07723	Spo07723	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo07723.1	Spo07723.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo07723.1.CDS.1	Spo07723.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo07723.1.exon.1	Spo07723.1.exon.1	exon

Homology

[Close]

BLAST of Spo07723.1 vs. NCBI nr
Match: gi|902184640|gb|KNA10335.1| (hypothetical protein SOVF_145290 [Spinacia oleracea])

HSP 1 Score: 250.0 bits (637), Expect = 2.300e-63
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1


		  
Query: 1   MMNQRRQKSQRPIISQVPEDFMRGLQEGSPTLPFPLRNVQKASRKVMKNDASMLYRPQER 60
           MMNQRRQKSQRPIISQVPEDFMRGLQEGSPTLPFPLRNVQKASRKVMKNDASMLYRPQER
Sbjct: 6   MMNQRRQKSQRPIISQVPEDFMRGLQEGSPTLPFPLRNVQKASRKVMKNDASMLYRPQER 65

Query: 61  SKSSAQIESSTAADEYMALKRKYLMLEVESCDLGKELRESEDEIKNLEDEKLELLDQLVV 120
           SKSSAQIESSTAADEYMALKRKYLMLEVESCDLGKELRESEDEIKNLEDEKLELLDQLVV
Sbjct: 66  SKSSAQIESSTAADEYMALKRKYLMLEVESCDLGKELRESEDEIKNLEDEKLELLDQLVV 125

Query: 121 LEGLVDPSEVQNQ 134
           LEGLVDPSEVQNQ
Sbjct: 126 LEGLVDPSEVQNQ 138

[Close]

BLAST of Spo07723.1 vs. NCBI nr
Match: gi|870859939|gb|KMT11309.1| (hypothetical protein BVRB_5g109910 isoform A [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 181.0 bits (458), Expect = 1.300e-42
Identity = 97/133 (72.93%), Postives = 112/133 (84.21%), Query Frame = 1


		  
Query: 1   MMNQRRQKSQRPIISQVPEDFMRGLQEGSPTLPFPLRNVQKASRKVMKNDASMLYRPQER 60
           M+N R+QKSQRPIISQ PE+FMRG  +GS T  FP+R  QK SRK MKND S+LYRPQER
Sbjct: 6   MLNPRKQKSQRPIISQAPEEFMRG--QGSSTSAFPVRRAQKVSRKGMKNDVSLLYRPQER 65

Query: 61  SKSSAQIESSTAADEYMALKRKYLMLEVESCDLGKELRESEDEIKNLEDEKLELLDQLVV 120
            KSS Q+ESST  +EY AL+RK+L+LE ESC+LG ELRE+ED+ K+LEDEKLELLDQLVV
Sbjct: 66  LKSSGQLESSTTVNEYTALRRKFLLLEEESCNLGIELREAEDDTKSLEDEKLELLDQLVV 125

Query: 121 LEGLVDPSEVQNQ 134
           LEGLVDPSEV NQ
Sbjct: 126 LEGLVDPSEVHNQ 136

[Close]

BLAST of Spo07723.1 vs. NCBI nr
Match: gi|870859940|gb|KMT11310.1| (hypothetical protein BVRB_5g109910 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 181.0 bits (458), Expect = 1.300e-42
Identity = 97/133 (72.93%), Postives = 112/133 (84.21%), Query Frame = 1


		  
Query: 1   MMNQRRQKSQRPIISQVPEDFMRGLQEGSPTLPFPLRNVQKASRKVMKNDASMLYRPQER 60
           M+N R+QKSQRPIISQ PE+FMRG  +GS T  FP+R  QK SRK MKND S+LYRPQER
Sbjct: 1   MLNPRKQKSQRPIISQAPEEFMRG--QGSSTSAFPVRRAQKVSRKGMKNDVSLLYRPQER 60

Query: 61  SKSSAQIESSTAADEYMALKRKYLMLEVESCDLGKELRESEDEIKNLEDEKLELLDQLVV 120
            KSS Q+ESST  +EY AL+RK+L+LE ESC+LG ELRE+ED+ K+LEDEKLELLDQLVV
Sbjct: 61  LKSSGQLESSTTVNEYTALRRKFLLLEEESCNLGIELREAEDDTKSLEDEKLELLDQLVV 120

Query: 121 LEGLVDPSEVQNQ 134
           LEGLVDPSEV NQ
Sbjct: 121 LEGLVDPSEVHNQ 131

[Close]

BLAST of Spo07723.1 vs. NCBI nr
Match: gi|802748731|ref|XP_012087564.1| (PREDICTED: uncharacterized protein LOC105646330 [Jatropha curcas])

HSP 1 Score: 110.9 bits (276), Expect = 1.700e-21
Identity = 62/96 (64.58%), Postives = 75/96 (78.12%), Query Frame = 1


		  
Query: 35  PLRNVQKASRKVMKNDASMLYRPQERSKSSAQIESSTAADEYMALKRKYLMLEVESCDLG 94
           PLR  QKASR+ +KN+ S L + QERS S +  +SST+ +EY AL+RKYL+LE ES  LG
Sbjct: 46  PLRTSQKASRRNLKNEGSPLIQQQERSNSDSLPDSSTSGNEYRALRRKYLLLEEESFGLG 105

Query: 95  KELRESEDEIKNLEDEKLELLDQLVVLEGLVDPSEV 131
           KEL+  EDE+K LEDEKL LLDQLVVLEGL+DPS V
Sbjct: 106 KELKVVEDEVKTLEDEKLALLDQLVVLEGLIDPSVV 141

[Close]

BLAST of Spo07723.1 vs. NCBI nr
Match: gi|567865189|ref|XP_006425217.1| (hypothetical protein CICLE_v10026700mg [Citrus clementina])

HSP 1 Score: 110.2 bits (274), Expect = 2.900e-21
Identity = 67/130 (51.54%), Postives = 91/130 (70.00%), Query Frame = 1


		  
Query: 4   QRRQKSQRPIISQVPEDFMRGLQEGSPTLPFPLRNVQKASRKVMKNDASMLYRPQERSKS 63
           +++  SQR    Q+  + ++ +Q       FPL   QK S++ +KN+ S L++  ERS S
Sbjct: 19  KKKMSSQRGASLQLQGNEIKEIQNVLGA--FPLGMGQKVSKRNLKNEVSALFQQPERSNS 78

Query: 64  SAQIESSTAADEYMALKRKYLMLEVESCDLGKELRESEDEIKNLEDEKLELLDQLVVLEG 123
            +  +S+T+ +EY AL+RKYL+LE ES  LGKELRE EDE+K LEDEKL LLDQLVVLEG
Sbjct: 79  DSLQDSTTSDNEYRALRRKYLLLEEESFALGKELREVEDEVKTLEDEKLTLLDQLVVLEG 138

Query: 124 LVDPSEVQNQ 134
           LVDPS++Q Q
Sbjct: 139 LVDPSDMQFQ 146

[Close]

BLAST of Spo07723.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QSV9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_145290 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.600e-63
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1


		  
Query: 1   MMNQRRQKSQRPIISQVPEDFMRGLQEGSPTLPFPLRNVQKASRKVMKNDASMLYRPQER 60
           MMNQRRQKSQRPIISQVPEDFMRGLQEGSPTLPFPLRNVQKASRKVMKNDASMLYRPQER
Sbjct: 6   MMNQRRQKSQRPIISQVPEDFMRGLQEGSPTLPFPLRNVQKASRKVMKNDASMLYRPQER 65

Query: 61  SKSSAQIESSTAADEYMALKRKYLMLEVESCDLGKELRESEDEIKNLEDEKLELLDQLVV 120
           SKSSAQIESSTAADEYMALKRKYLMLEVESCDLGKELRESEDEIKNLEDEKLELLDQLVV
Sbjct: 66  SKSSAQIESSTAADEYMALKRKYLMLEVESCDLGKELRESEDEIKNLEDEKLELLDQLVV 125

Query: 121 LEGLVDPSEVQNQ 134
           LEGLVDPSEVQNQ
Sbjct: 126 LEGLVDPSEVQNQ 138

[Close]

BLAST of Spo07723.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CBV0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g109910 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 9.300e-43
Identity = 97/133 (72.93%), Postives = 112/133 (84.21%), Query Frame = 1


		  
Query: 1   MMNQRRQKSQRPIISQVPEDFMRGLQEGSPTLPFPLRNVQKASRKVMKNDASMLYRPQER 60
           M+N R+QKSQRPIISQ PE+FMRG  +GS T  FP+R  QK SRK MKND S+LYRPQER
Sbjct: 1   MLNPRKQKSQRPIISQAPEEFMRG--QGSSTSAFPVRRAQKVSRKGMKNDVSLLYRPQER 60

Query: 61  SKSSAQIESSTAADEYMALKRKYLMLEVESCDLGKELRESEDEIKNLEDEKLELLDQLVV 120
            KSS Q+ESST  +EY AL+RK+L+LE ESC+LG ELRE+ED+ K+LEDEKLELLDQLVV
Sbjct: 61  LKSSGQLESSTTVNEYTALRRKFLLLEEESCNLGIELREAEDDTKSLEDEKLELLDQLVV 120

Query: 121 LEGLVDPSEVQNQ 134
           LEGLVDPSEV NQ
Sbjct: 121 LEGLVDPSEVHNQ 131

[Close]

BLAST of Spo07723.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CGS4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g109910 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 9.300e-43
Identity = 97/133 (72.93%), Postives = 112/133 (84.21%), Query Frame = 1


		  
Query: 1   MMNQRRQKSQRPIISQVPEDFMRGLQEGSPTLPFPLRNVQKASRKVMKNDASMLYRPQER 60
           M+N R+QKSQRPIISQ PE+FMRG  +GS T  FP+R  QK SRK MKND S+LYRPQER
Sbjct: 6   MLNPRKQKSQRPIISQAPEEFMRG--QGSSTSAFPVRRAQKVSRKGMKNDVSLLYRPQER 65

Query: 61  SKSSAQIESSTAADEYMALKRKYLMLEVESCDLGKELRESEDEIKNLEDEKLELLDQLVV 120
            KSS Q+ESST  +EY AL+RK+L+LE ESC+LG ELRE+ED+ K+LEDEKLELLDQLVV
Sbjct: 66  LKSSGQLESSTTVNEYTALRRKFLLLEEESCNLGIELREAEDDTKSLEDEKLELLDQLVV 125

Query: 121 LEGLVDPSEVQNQ 134
           LEGLVDPSEV NQ
Sbjct: 126 LEGLVDPSEVHNQ 136

[Close]

BLAST of Spo07723.1 vs. UniProtKB/TrEMBL
Match: A0A067JZC4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24287 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.200e-21
Identity = 62/96 (64.58%), Postives = 75/96 (78.12%), Query Frame = 1


		  
Query: 35  PLRNVQKASRKVMKNDASMLYRPQERSKSSAQIESSTAADEYMALKRKYLMLEVESCDLG 94
           PLR  QKASR+ +KN+ S L + QERS S +  +SST+ +EY AL+RKYL+LE ES  LG
Sbjct: 46  PLRTSQKASRRNLKNEGSPLIQQQERSNSDSLPDSSTSGNEYRALRRKYLLLEEESFGLG 105

Query: 95  KELRESEDEIKNLEDEKLELLDQLVVLEGLVDPSEV 131
           KEL+  EDE+K LEDEKL LLDQLVVLEGL+DPS V
Sbjct: 106 KELKVVEDEVKTLEDEKLALLDQLVVLEGLIDPSVV 141

[Close]

BLAST of Spo07723.1 vs. UniProtKB/TrEMBL
Match: V4SD32_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026700mg PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.000e-21
Identity = 67/130 (51.54%), Postives = 91/130 (70.00%), Query Frame = 1


		  
Query: 4   QRRQKSQRPIISQVPEDFMRGLQEGSPTLPFPLRNVQKASRKVMKNDASMLYRPQERSKS 63
           +++  SQR    Q+  + ++ +Q       FPL   QK S++ +KN+ S L++  ERS S
Sbjct: 19  KKKMSSQRGASLQLQGNEIKEIQNVLGA--FPLGMGQKVSKRNLKNEVSALFQQPERSNS 78

Query: 64  SAQIESSTAADEYMALKRKYLMLEVESCDLGKELRESEDEIKNLEDEKLELLDQLVVLEG 123
            +  +S+T+ +EY AL+RKYL+LE ES  LGKELRE EDE+K LEDEKL LLDQLVVLEG
Sbjct: 79  DSLQDSTTSDNEYRALRRKYLLLEEESFALGKELREVEDEVKTLEDEKLTLLDQLVVLEG 138

Query: 124 LVDPSEVQNQ 134
           LVDPS++Q Q
Sbjct: 139 LVDPSDMQFQ 146

[Close]

BLAST of Spo07723.1 vs. TAIR (Arabidopsis)
Match: AT3G51500.1 (unknown protein)

HSP 1 Score: 78.6 bits (192), Expect = 3.300e-15
Identity = 48/98 (48.98%), Postives = 63/98 (64.29%), Query Frame = 1


		  
Query: 30  PTLPFPLRNVQKASRKVMKNDASMLYRPQERSKSSAQIESSTAADEYMALKRKYLMLEVE 89
           P    P R  +K S +   N    +    E S +S     S+  +EY AL+RKYL+LE +
Sbjct: 23  PLTQLPPRIGKKVSNRSKSNQVHAISHQLEMSPNS----DSSPGNEYRALRRKYLLLEED 82

Query: 90  SCDLGKELRESEDEIKNLEDEKLELLDQLVVLEGLVDP 128
           S  L +EL+E+EDE+K LEDEKLELLD+LVV+EGLVDP
Sbjct: 83  SFALERELKEAEDEVKALEDEKLELLDKLVVMEGLVDP 116

The following BLAST results are available for this feature:

BLAST of Spo07723.1 vs. NCBI nr
BLAST of Spo07723.1 vs. UniProtKB/TrEMBL
BLAST of Spo07723.1 vs. ExPASy Swiss-Prot
BLAST of Spo07723.1 vs. TAIR (Arabidopsis)

BLAST of Spo07723.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902184640\|gb\|KNA10335.1\|	2.3e-63	100.	hypothetical protein SOVF_1452...	[more]
gi\|870859939\|gb\|KMT11309.1\|	1.3e-42	72.9	hypothetical protein BVRB_5g10...	[more]
gi\|870859940\|gb\|KMT11310.1\|	1.3e-42	72.9	hypothetical protein BVRB_5g10...	[more]
gi\|802748731\|ref\|XP_012087564.1\|	1.7e-21	64.5	PREDICTED: uncharacterized pro...	[more]
gi\|567865189\|ref\|XP_006425217.1\|	2.9e-21	51.5	hypothetical protein CICLE_v10...	[more]

BLAST of Spo07723.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QSV9_SPIOL	1.6e-63	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CBV0_BETVU	9.3e-43	72.9	Uncharacterized protein OS=Bet...	[more]
A0A0J8CGS4_BETVU	9.3e-43	72.9	Uncharacterized protein OS=Bet...	[more]
A0A067JZC4_JATCU	1.2e-21	64.5	Uncharacterized protein OS=Jat...	[more]
V4SD32_9ROSI	2.0e-21	51.5	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo07723.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo07723.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G51500.1	3.3e-15	48.9	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 97..124 scor
None	No IPR available	PANTHER	PTHR37740	FAMILY NOT NAMED	coord: 35..133 score: 4.7
None	No IPR available	PANTHER	PTHR37740:SF1	SUBFAMILY NOT NAMED	coord: 35..133 score: 4.7