Spo17428.1 (mRNA)

Overview
NameSpo17428.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 33177459 .. 33178945 (+)
Sequence length1278
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTATTTCGGAGGAGCGTTGGGAAGTAGGCCGGTGCATGCAGACATGCATGCAGTGGTCCTATAAGCTACGTACGTACGTAGTAATTCTATAAATAGGGCGATTTCTGTGTGGAGAAAAACAGATCGATCGAGTTCTACAATACAATTAATATTACTACTCCTTAATTTTAAGAGATCGATTTGAAGGAAATGGCGAGGGTCTCATTCAACCTTGTTGTTGTTCCTGCTATTTTAGCAATAACATTCATGTTGTCCACTGCAACAGGTAATGTACTTATAAACTCTCTCCGTCTCTTTGTATTCTTTATCTGTTTTGTTTTGGATCGGTGTACCTTTTTAATCTTTATGTTTGGAATATTTTCTTTTGTGAACATGAATAATGTAGCATGTACGTACGTCTTTTCTATAAGTGTGTCACTATACAATGTTACTGTAACTACCTTAATTCTTCTTATGAATCATGCATGCATGCAGTAGTGCTTGGGAAGGTGACAACAACTTCTGAAGAAATGGAAATGCCAGTGGGATATAAAATGATGTTAGAAGAAATGGCGTTGGCAAGAAAGGTCCAGTCGAACATGTATGATCAGCCTGCAGCTGTCCGCCGGTCTCAAGCAGCAATGAAAGGTCTAATGGATGTGTTAGTGTCATCTTCATCGGAGAAAGCTATGCAGTGTGTGGCAGCAGGCGGTTATTGTAACCTTGTGTTTGGACCGCGATGTTGTACTAATGATTGGGCATGTGTACCACCAGGTCTTGTTGGTGGTGTGTGTGTGGCTTAAGCTGATCGAACAACAACCTAGTGCCTAGCTCGATCAGTACGTAGCTAGACGAAGACAGCGTGCGTGGCTTATTTAATTTAATTATGTACTTTTTCTCTATTTTCATTGTCTTAATTTCTTTATGAATATTCAATAGTATGTTGGTCCTTTGTTGTTCATGCTTGATTTGTACACAAGCAATTAAGCACGACAACATATGAATAAACTAAGGATGTAACATACTTTGTGTCTATGTGTCAGTGTGTGTATGTGCATTTGGTTGATGATCATGAATAAACTAGTGTTGTATTCTTCGTATATGTACGAACTAGATTTAAGCCCGTACAATTAATATGTCATTCAATAAAGGTTAATTAGTTAGTATCATATATAACCTACTAGTCTACTACTGTTTTCTGCTATCCCAAAACCTAAAACGTACCTTTTAAAACTCTGAAACAGAAAATACATGCAGTAGACATTTATGTTATCGTTATTGTACTCGTCCCTGAGTATCCAATTCACAATCCTTCAAAACTGTGATAAATAACAATCACTAGCACAACGCTACAAAACTACTGTATCATTATATGGAACTGGTCCCTCTTTATTGAAGATAGGCCACTGAGCCAAGTAATGAAGCCCAACTCAGCCAGCAATGAAGCCCATCTCAGCCTAAATTGTAGGAATTATGTGCATGTGATTGTGTACTTTTCTAGCCGT

mRNA sequence

AATTTATTTCGGAGGAGCGTTGGGAAGTAGGCCGGTGCATGCAGACATGCATGCAGTGGTCCTATAAGCTACGTACGTACGTAGTAATTCTATAAATAGGGCGATTTCTGTGTGGAGAAAAACAGATCGATCGAGTTCTACAATACAATTAATATTACTACTCCTTAATTTTAAGAGATCGATTTGAAGGAAATGGCGAGGGTCTCATTCAACCTTGTTGTTGTTCCTGCTATTTTAGCAATAACATTCATGTTGTCCACTGCAACAGTAGTGCTTGGGAAGGTGACAACAACTTCTGAAGAAATGGAAATGCCAGTGGGATATAAAATGATGTTAGAAGAAATGGCGTTGGCAAGAAAGGTCCAGTCGAACATGTATGATCAGCCTGCAGCTGTCCGCCGGTCTCAAGCAGCAATGAAAGGTCTAATGGATGTGTTAGTGTCATCTTCATCGGAGAAAGCTATGCAGTGTGTGGCAGCAGGCGGTTATTGTAACCTTGTGTTTGGACCGCGATGTTGTACTAATGATTGGGCATGTGTACCACCAGGTCTTGTTGGTGGTGTGTGTGTGGCTTAAGCTGATCGAACAACAACCTAGTGCCTAGCTCGATCAGTACGTAGCTAGACGAAGACAGCGTGCGTGGCTTATTTAATTTAATTATGTACTTTTTCTCTATTTTCATTGTCTTAATTTCTTTATGAATATTCAATAGTATGTTGGTCCTTTGTTGTTCATGCTTGATTTGTACACAAGCAATTAAGCACGACAACATATGAATAAACTAAGGATGTAACATACTTTGTGTCTATGTGTCAGTGTGTGTATGTGCATTTGGTTGATGATCATGAATAAACTAGTGTTGTATTCTTCGTATATGTACGAACTAGATTTAAGCCCGTACAATTAATATGTCATTCAATAAAGGTTAATTAGTTAGTATCATATATAACCTACTAGTCTACTACTGTTTTCTGCTATCCCAAAACCTAAAACGTACCTTTTAAAACTCTGAAACAGAAAATACATGCAGTAGACATTTATGTTATCGTTATTGTACTCGTCCCTGAGTATCCAATTCACAATCCTTCAAAACTGTGATAAATAACAATCACTAGCACAACGCTACAAAACTACTGTATCATTATATGGAACTGGTCCCTCTTTATTGAAGATAGGCCACTGAGCCAAGTAATGAAGCCCAACTCAGCCAGCAATGAAGCCCATCTCAGCCTAAATTGTAGGAATTATGTGCATGTGATTGTGTACTTTTCTAGCCGT

Coding sequence (CDS)

ATGGCGAGGGTCTCATTCAACCTTGTTGTTGTTCCTGCTATTTTAGCAATAACATTCATGTTGTCCACTGCAACAGTAGTGCTTGGGAAGGTGACAACAACTTCTGAAGAAATGGAAATGCCAGTGGGATATAAAATGATGTTAGAAGAAATGGCGTTGGCAAGAAAGGTCCAGTCGAACATGTATGATCAGCCTGCAGCTGTCCGCCGGTCTCAAGCAGCAATGAAAGGTCTAATGGATGTGTTAGTGTCATCTTCATCGGAGAAAGCTATGCAGTGTGTGGCAGCAGGCGGTTATTGTAACCTTGTGTTTGGACCGCGATGTTGTACTAATGATTGGGCATGTGTACCACCAGGTCTTGTTGGTGGTGTGTGTGTGGCTTAA

Protein sequence

MARVSFNLVVVPAILAITFMLSTATVVLGKVTTTSEEMEMPVGYKMMLEEMALARKVQSNMYDQPAAVRRSQAAMKGLMDVLVSSSSEKAMQCVAAGGYCNLVFGPRCCTNDWACVPPGLVGGVCVA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo17428Spo17428gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo17428.1Spo17428.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17428.1.exon.1Spo17428.1.exon.1exon
Spo17428.1.exon.2Spo17428.1.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17428.1.utr5p.1Spo17428.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17428.1.CDS.1Spo17428.1.CDS.1CDS
Spo17428.1.CDS.2Spo17428.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17428.1.utr3p.1Spo17428.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo17428.1 vs. NCBI nr
Match: gi|902229720|gb|KNA21583.1| (hypothetical protein SOVF_041880 isoform A [Spinacia oleracea])

HSP 1 Score: 243.0 bits (619), Expect = 2.700e-61
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 

		  

Query: 1   MARVSFNLVVVPAILAITFMLSTATVVLGKVTTTSEEMEMPVGYKMMLEEMALARKVQSN 60
           MARVSFNLVVVPAILAITFMLSTATVVLGKVTTTSEEMEMPVGYKMMLEEMALARKVQSN
Sbjct: 1   MARVSFNLVVVPAILAITFMLSTATVVLGKVTTTSEEMEMPVGYKMMLEEMALARKVQSN 60

Query: 61  MYDQPAAVRRSQAAMKGLMDVLVSSSSEKAMQCVAAGGYCNLVFGPRCCTNDWACVPPGL 120
           MYDQPAAVRRSQAAMKGLMDVLVSSSSEKAMQCVAAGGYCNLVFGPRCCTNDWACVPPGL
Sbjct: 61  MYDQPAAVRRSQAAMKGLMDVLVSSSSEKAMQCVAAGGYCNLVFGPRCCTNDWACVPPGL 120

Query: 121 VGGVCVA 128
           VGGVCVA
Sbjct: 121 VGGVCVA 127
[Close]
BLAST of Spo17428.1 vs. NCBI nr
Match: gi|902229721|gb|KNA21584.1| (hypothetical protein SOVF_041880 isoform B [Spinacia oleracea])

HSP 1 Score: 237.7 bits (605), Expect = 1.200e-59
Identity = 126/127 (99.21%), Postives = 126/127 (99.21%), Query Frame = 1 

		  

Query: 1   MARVSFNLVVVPAILAITFMLSTATVVLGKVTTTSEEMEMPVGYKMMLEEMALARKVQSN 60
           MARVSFNLVVVPAILAITFMLSTATV LGKVTTTSEEMEMPVGYKMMLEEMALARKVQSN
Sbjct: 1   MARVSFNLVVVPAILAITFMLSTATV-LGKVTTTSEEMEMPVGYKMMLEEMALARKVQSN 60

Query: 61  MYDQPAAVRRSQAAMKGLMDVLVSSSSEKAMQCVAAGGYCNLVFGPRCCTNDWACVPPGL 120
           MYDQPAAVRRSQAAMKGLMDVLVSSSSEKAMQCVAAGGYCNLVFGPRCCTNDWACVPPGL
Sbjct: 61  MYDQPAAVRRSQAAMKGLMDVLVSSSSEKAMQCVAAGGYCNLVFGPRCCTNDWACVPPGL 120

Query: 121 VGGVCVA 128
           VGGVCVA
Sbjct: 121 VGGVCVA 126
[Close]
BLAST of Spo17428.1 vs. NCBI nr
Match: gi|902237520|gb|KNA24832.1| (hypothetical protein SOVF_011920 [Spinacia oleracea])

HSP 1 Score: 113.6 bits (283), Expect = 2.500e-22
Identity = 69/131 (52.67%), Postives = 91/131 (69.47%), Query Frame = 1 

		  

Query: 1   MARVSFNLVVVPAILAITFMLSTATV-VLGKV-TTTSEEMEMPVG--YKMMLEEMALARK 60
           M RVS NLV + A+LAI F+L  AT  VLG+V TT+SEE ++PV   YK+MLEE A  RK
Sbjct: 1   MGRVSINLVSI-AVLAIMFLLCAATAPVLGRVATTSSEEKQLPVQVEYKLMLEERAAIRK 60

Query: 61  VQSNMYDQPAAVRRSQAAMKGLMDVLVSSSSEKAMQCVAAGGYCNLVFGPRCCTNDWACV 120
            Q ++Y Q   ++   +    ++DV   SS E+A+QCV  G YCN VFGP+CC+ D+AC+
Sbjct: 61  AQQDIY-QNQKIKMMNSLPNNILDVF-ESSKEEALQCVGQGSYCNFVFGPQCCSTDFACL 120

Query: 121 PPGLVGGVCVA 128
           PPG+ GGVCVA
Sbjct: 121 PPGIFGGVCVA 128
[Close]
BLAST of Spo17428.1 vs. NCBI nr
Match: gi|731358992|ref|XP_010691047.1| (PREDICTED: uncharacterized protein LOC104904486 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 97.1 bits (240), Expect = 2.400e-17
Identity = 63/140 (45.00%), Postives = 89/140 (63.57%), Query Frame = 1 

		  

Query: 1   MARVSFNLVVVPAILAITFMLSTATVVLG--KVTTTSEEME-MPVGYKMMLEEMALARKV 60
           M   S NL+  PA++AI  +LST T  +    VTT SEEM+ +  GYK ++EE  LA +V
Sbjct: 1   MGSCSVNLIC-PAVVAILILLSTTTAPVNGRMVTTNSEEMQAVSQGYKEVIEE--LAARV 60

Query: 61  QSNMYDQPAAVRRSQAAM----KGLMDVLVSS------SSEKAMQCVAAGGYCNLVFGPR 120
           Q N +   +   +++  +    K  +DV   +      ++ ++++CV AG YCN+VFGPR
Sbjct: 61  QQNNHIYQSGNEKTKMTITSRPKNTIDVFEEAVKMHKIATAESLECVGAGRYCNIVFGPR 120

Query: 121 CCTNDWACVPPGLVGGVCVA 128
           CCTND+ACVPPGLVGGVCVA
Sbjct: 121 CCTNDFACVPPGLVGGVCVA 137
[Close]
BLAST of Spo17428.1 vs. NCBI nr
Match: gi|902201700|gb|KNA14039.1| (hypothetical protein SOVF_111070 [Spinacia oleracea])

HSP 1 Score: 96.3 bits (238), Expect = 4.100e-17
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 1 

		  

Query: 24  ATVVLGKVTTTSEEMEMPVGYKMMLEEMALARKVQSNMYD---QPAAVRRSQAAMKGLMD 83
           A  VLG  TT+SEE ++ VGYK+MLEEMA  RK + + Y+   Q   ++   +    +++
Sbjct: 7   AAPVLG--TTSSEEKQLAVGYKLMLEEMAAIRKAKQDKYESDGQNQKIKTMNSLPNNILN 66

Query: 84  VLVSSSSEKAMQCVAAGGYCNLVFGPRCCTNDWACVPPGLVGGVCVA 128
           V    S E+++QCV  G YCN VFGP CC+  +AC+PPG+VGGVCVA
Sbjct: 67  VF-ELSREESLQCVGQGSYCNNVFGPDCCSTSFACIPPGIVGGVCVA 110
[Close]
BLAST of Spo17428.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQ27_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_041880 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 1.900e-61
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 

		  

Query: 1   MARVSFNLVVVPAILAITFMLSTATVVLGKVTTTSEEMEMPVGYKMMLEEMALARKVQSN 60
           MARVSFNLVVVPAILAITFMLSTATVVLGKVTTTSEEMEMPVGYKMMLEEMALARKVQSN
Sbjct: 1   MARVSFNLVVVPAILAITFMLSTATVVLGKVTTTSEEMEMPVGYKMMLEEMALARKVQSN 60

Query: 61  MYDQPAAVRRSQAAMKGLMDVLVSSSSEKAMQCVAAGGYCNLVFGPRCCTNDWACVPPGL 120
           MYDQPAAVRRSQAAMKGLMDVLVSSSSEKAMQCVAAGGYCNLVFGPRCCTNDWACVPPGL
Sbjct: 61  MYDQPAAVRRSQAAMKGLMDVLVSSSSEKAMQCVAAGGYCNLVFGPRCCTNDWACVPPGL 120

Query: 121 VGGVCVA 128
           VGGVCVA
Sbjct: 121 VGGVCVA 127
[Close]
BLAST of Spo17428.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRP7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_041880 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 8.000e-60
Identity = 126/127 (99.21%), Postives = 126/127 (99.21%), Query Frame = 1 

		  

Query: 1   MARVSFNLVVVPAILAITFMLSTATVVLGKVTTTSEEMEMPVGYKMMLEEMALARKVQSN 60
           MARVSFNLVVVPAILAITFMLSTATV LGKVTTTSEEMEMPVGYKMMLEEMALARKVQSN
Sbjct: 1   MARVSFNLVVVPAILAITFMLSTATV-LGKVTTTSEEMEMPVGYKMMLEEMALARKVQSN 60

Query: 61  MYDQPAAVRRSQAAMKGLMDVLVSSSSEKAMQCVAAGGYCNLVFGPRCCTNDWACVPPGL 120
           MYDQPAAVRRSQAAMKGLMDVLVSSSSEKAMQCVAAGGYCNLVFGPRCCTNDWACVPPGL
Sbjct: 61  MYDQPAAVRRSQAAMKGLMDVLVSSSSEKAMQCVAAGGYCNLVFGPRCCTNDWACVPPGL 120

Query: 121 VGGVCVA 128
           VGGVCVA
Sbjct: 121 VGGVCVA 126
[Close]
BLAST of Spo17428.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S137_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_011920 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.700e-22
Identity = 69/131 (52.67%), Postives = 91/131 (69.47%), Query Frame = 1 

		  

Query: 1   MARVSFNLVVVPAILAITFMLSTATV-VLGKV-TTTSEEMEMPVG--YKMMLEEMALARK 60
           M RVS NLV + A+LAI F+L  AT  VLG+V TT+SEE ++PV   YK+MLEE A  RK
Sbjct: 1   MGRVSINLVSI-AVLAIMFLLCAATAPVLGRVATTSSEEKQLPVQVEYKLMLEERAAIRK 60

Query: 61  VQSNMYDQPAAVRRSQAAMKGLMDVLVSSSSEKAMQCVAAGGYCNLVFGPRCCTNDWACV 120
            Q ++Y Q   ++   +    ++DV   SS E+A+QCV  G YCN VFGP+CC+ D+AC+
Sbjct: 61  AQQDIY-QNQKIKMMNSLPNNILDVF-ESSKEEALQCVGQGSYCNFVFGPQCCSTDFACL 120

Query: 121 PPGLVGGVCVA 128
           PPG+ GGVCVA
Sbjct: 121 PPGIFGGVCVA 128
[Close]
BLAST of Spo17428.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BHY9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g218850 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.700e-17
Identity = 63/140 (45.00%), Postives = 89/140 (63.57%), Query Frame = 1 

		  

Query: 1   MARVSFNLVVVPAILAITFMLSTATVVLG--KVTTTSEEME-MPVGYKMMLEEMALARKV 60
           M   S NL+  PA++AI  +LST T  +    VTT SEEM+ +  GYK ++EE  LA +V
Sbjct: 1   MGSCSVNLIC-PAVVAILILLSTTTAPVNGRMVTTNSEEMQAVSQGYKEVIEE--LAARV 60

Query: 61  QSNMYDQPAAVRRSQAAM----KGLMDVLVSS------SSEKAMQCVAAGGYCNLVFGPR 120
           Q N +   +   +++  +    K  +DV   +      ++ ++++CV AG YCN+VFGPR
Sbjct: 61  QQNNHIYQSGNEKTKMTITSRPKNTIDVFEEAVKMHKIATAESLECVGAGRYCNIVFGPR 120

Query: 121 CCTNDWACVPPGLVGGVCVA 128
           CCTND+ACVPPGLVGGVCVA
Sbjct: 121 CCTNDFACVPPGLVGGVCVA 137
[Close]
BLAST of Spo17428.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R517_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_111070 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.900e-17
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 1 

		  

Query: 24  ATVVLGKVTTTSEEMEMPVGYKMMLEEMALARKVQSNMYD---QPAAVRRSQAAMKGLMD 83
           A  VLG  TT+SEE ++ VGYK+MLEEMA  RK + + Y+   Q   ++   +    +++
Sbjct: 7   AAPVLG--TTSSEEKQLAVGYKLMLEEMAAIRKAKQDKYESDGQNQKIKTMNSLPNNILN 66

Query: 84  VLVSSSSEKAMQCVAAGGYCNLVFGPRCCTNDWACVPPGLVGGVCVA 128
           V    S E+++QCV  G YCN VFGP CC+  +AC+PPG+VGGVCVA
Sbjct: 67  VF-ELSREESLQCVGQGSYCNNVFGPDCCSTSFACIPPGIVGGVCVA 110
The following BLAST results are available for this feature:
BLAST of Spo17428.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902229720|gb|KNA21583.1|2.7e-61100.hypothetical protein SOVF_0418... [more]
gi|902229721|gb|KNA21584.1|1.2e-5999.2hypothetical protein SOVF_0418... [more]
gi|902237520|gb|KNA24832.1|2.5e-2252.6hypothetical protein SOVF_0119... [more]
gi|731358992|ref|XP_010691047.1|2.4e-1745.0PREDICTED: uncharacterized pro... [more]
gi|902201700|gb|KNA14039.1|4.1e-1747.6hypothetical protein SOVF_1110... [more]
back to top
BLAST of Spo17428.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RQ27_SPIOL1.9e-61100.Uncharacterized protein OS=Spi... [more]
A0A0K9RRP7_SPIOL8.0e-6099.2Uncharacterized protein OS=Spi... [more]
A0A0K9S137_SPIOL1.7e-2252.6Uncharacterized protein OS=Spi... [more]
A0A0J8BHY9_BETVU1.7e-1745.0Uncharacterized protein OS=Bet... [more]
A0A0K9R517_SPIOL2.9e-1747.6Uncharacterized protein OS=Spi... [more]
back to top
BLAST of Spo17428.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo17428.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top