Spo21398.1 (mRNA) | SpinachBase

Overview


Name	Spo21398.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	BnaC09g12200D protein
Location	chr6 : 39350050 .. 39350403 (+)
Sequence length	354

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAATTGTATGGAAACTTGCAAGGTTAATAGATTCAAAGGAGGGGGAGGAGAAGAGAGCGGGAAATCGAAAGAAGAAAACGGGGGAATTGAAATGATTTGTAAAGAAGGAGACTTTGTGAAGAACGTTGCGAGTAATAAAAATGGTTTAAGAGTAAAAATGGTTTTGACTAAAGAAGAGTTACAATGGTTGATGATGCAGTTGAGTAACAGAGATGGCAATGGAGGAAAGAGGATTGAAGATGTTTTAGGAGAGCTTGAGAAGGGAAGAAAGAAAGTTTCAGGTCATTCTTGGAAACCTTCTCTTGATAGTATAACTGAAATCCCTGAAGTTGTTGAGATGAATAGATGA

mRNA sequence

ATGGGAAATTGTATGGAAACTTGCAAGGTTAATAGATTCAAAGGAGGGGGAGGAGAAGAGAGCGGGAAATCGAAAGAAGAAAACGGGGGAATTGAAATGATTTGTAAAGAAGGAGACTTTGTGAAGAACGTTGCGAGTAATAAAAATGGTTTAAGAGTAAAAATGGTTTTGACTAAAGAAGAGTTACAATGGTTGATGATGCAGTTGAGTAACAGAGATGGCAATGGAGGAAAGAGGATTGAAGATGTTTTAGGAGAGCTTGAGAAGGGAAGAAAGAAAGTTTCAGGTCATTCTTGGAAACCTTCTCTTGATAGTATAACTGAAATCCCTGAAGTTGTTGAGATGAATAGATGA

Coding sequence (CDS)

ATGGGAAATTGTATGGAAACTTGCAAGGTTAATAGATTCAAAGGAGGGGGAGGAGAAGAGAGCGGGAAATCGAAAGAAGAAAACGGGGGAATTGAAATGATTTGTAAAGAAGGAGACTTTGTGAAGAACGTTGCGAGTAATAAAAATGGTTTAAGAGTAAAAATGGTTTTGACTAAAGAAGAGTTACAATGGTTGATGATGCAGTTGAGTAACAGAGATGGCAATGGAGGAAAGAGGATTGAAGATGTTTTAGGAGAGCTTGAGAAGGGAAGAAAGAAAGTTTCAGGTCATTCTTGGAAACCTTCTCTTGATAGTATAACTGAAATCCCTGAAGTTGTTGAGATGAATAGATGA

Protein sequence

MGNCMETCKVNRFKGGGGEESGKSKEENGGIEMICKEGDFVKNVASNKNGLRVKMVLTKEELQWLMMQLSNRDGNGGKRIEDVLGELEKGRKKVSGHSWKPSLDSITEIPEVVEMNR

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo21398	Spo21398	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo21398.1	Spo21398.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21398.1.exon.1	Spo21398.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21398.1.CDS.1	Spo21398.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo21398.1 vs. NCBI nr
Match: gi|902196818|gb|KNA13222.1| (hypothetical protein SOVF_118670 [Spinacia oleracea])

HSP 1 Score: 239.2 bits (609), Expect = 3.600e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1


		  
Query: 1   MGNCMETCKVNRFKGGGGEESGKSKEENGGIEMICKEGDFVKNVASNKNGLRVKMVLTKE 60
           MGNCMETCKVNRFKGGGGEESGKSKEENGGIEMICKEGDFVKNVASNKNGLRVKMVLTKE
Sbjct: 1   MGNCMETCKVNRFKGGGGEESGKSKEENGGIEMICKEGDFVKNVASNKNGLRVKMVLTKE 60

Query: 61  ELQWLMMQLSNRDGNGGKRIEDVLGELEKGRKKVSGHSWKPSLDSITEIPEVVEMNR 118
           ELQWLMMQLSNRDGNGGKRIEDVLGELEKGRKKVSGHSWKPSLDSITEIPEVVEMNR
Sbjct: 61  ELQWLMMQLSNRDGNGGKRIEDVLGELEKGRKKVSGHSWKPSLDSITEIPEVVEMNR 117

[Close]

BLAST of Spo21398.1 vs. NCBI nr
Match: gi|870860608|gb|KMT11916.1| (hypothetical protein BVRB_5g098810 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 153.7 bits (387), Expect = 2.000e-34
Identity = 84/119 (70.59%), Postives = 95/119 (79.83%), Query Frame = 1


		  
Query: 1   MGNCMETCKVNRFKGGGGEESGKSKEENGGIEM--ICKEGDFVKNVASNKNGLRVKMVLT 60
           MGNCMET K+N      G+E  K K + G IEM  + KEG+FVK+V SNKNGLRVKMVLT
Sbjct: 1   MGNCMETSKIN--NNLKGKEERKIKVKEGKIEMGFVGKEGEFVKDVVSNKNGLRVKMVLT 60

Query: 61  KEELQWLMMQLSNRDGNGGKRIEDVLGELEKGRKKVSGHSWKPSLDSITEIPEVVEMNR 118
           KEELQWLM QLSNR+ +G KRIEDVLGE+EKGR K   HSWKPSLDSITEIPEV+EMN+
Sbjct: 61  KEELQWLMQQLSNRE-DGRKRIEDVLGEIEKGRSKKGCHSWKPSLDSITEIPEVLEMNK 116

[Close]

BLAST of Spo21398.1 vs. NCBI nr
Match: gi|703088078|ref|XP_010093440.1| (hypothetical protein L484_001388 [Morus notabilis])

HSP 1 Score: 102.8 bits (255), Expect = 4.100e-19
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1


		  
Query: 1   MGNCMETCKV-NRFKGGGGEESGKSKEE--NGGIEMICKEGDFVKNVASNKNG-LRVKMV 60
           MGNCMETC   N+ K     +  K ++   N   E     G FVK  +  + G LRVK+V
Sbjct: 1   MGNCMETCNQRNQAKEMHDHDQRKQEDHDHNQRDETEINGGPFVKESSLGEKGKLRVKIV 60

Query: 61  LTKEELQWLMMQLSNRDGNGGKRIEDVLGELEKGRKKVSGHSWKPSLDSITEIPEVVEMN 118
           +TKEEL+WLM+QL+N+   GGK +EDVLGE+E+GR KV   SWKPSL+SI E PEVVEM+
Sbjct: 61  VTKEELEWLMVQLNNK---GGKSLEDVLGEIERGRAKVE-VSWKPSLESIMECPEVVEMD 117

[Close]

BLAST of Spo21398.1 vs. NCBI nr
Match: gi|1009156774|ref|XP_015896418.1| (PREDICTED: uncharacterized protein LOC107430133 [Ziziphus jujuba])

HSP 1 Score: 99.8 bits (247), Expect = 3.500e-18
Identity = 58/117 (49.57%), Postives = 76/117 (64.96%), Query Frame = 1


		  
Query: 1   MGNCMETCKVNRFKGGGGEESGKSKEENGGIEMICKEGDFVKNVASNKNGLRVKMVLTKE 60
           MGNCMET     +K G   E  + + +    E   +   FVK  +  KN +RVK+V+TKE
Sbjct: 1   MGNCMET-----WKQGQKTEEMQRQNQQEEEEKERRGSGFVKESSLGKNSMRVKIVVTKE 60

Query: 61  ELQWLMMQLSNRDGNGGKRIEDVLGELEKGRKKVSGHSWKPSLDSITEIPEVVEMNR 118
           EL+WLM+QL N+   GGK +EDVL E+E+ R+K  G  WKPSL+SI E PEVVEM+R
Sbjct: 61  ELEWLMLQLKNK---GGKSLEDVLEEIERSREKAEG--WKPSLESIMECPEVVEMDR 107

[Close]

BLAST of Spo21398.1 vs. NCBI nr
Match: gi|388517277|gb|AFK46700.1| (unknown [Lotus japonicus])

HSP 1 Score: 99.0 bits (245), Expect = 5.900e-18
Identity = 58/119 (48.74%), Postives = 81/119 (68.07%), Query Frame = 1


		  
Query: 1   MGNCMETCKVNRFKGGGGEESGKSKEENGGIEMICKEGDFVK-NVASNKNGLRVKMVLTK 60
           MGNCMETC + +      ++  + K+E    +   +   FVK N +  KNGLR+K+VLTK
Sbjct: 1   MGNCMETCTLRKQDAMRMQKKQQQKQEE---DTKTRSSGFVKINDSKGKNGLRMKIVLTK 60

Query: 61  EELQWLMMQLSNRDGNGGKRIEDVLGELEKGRK-KVSGHSWKPSLDSITEIPEVVEMNR 118
           EEL+WLM+QL+ +   GG ++E VLGE+E+GR+ KV G SWKPSL+SI E PE  +M+R
Sbjct: 61  EELKWLMLQLNEK---GGMKLEKVLGEIERGREIKVEG-SWKPSLESIVEAPESPDMDR 112

[Close]

BLAST of Spo21398.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R350_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_118670 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 2.500e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1


		  
Query: 1   MGNCMETCKVNRFKGGGGEESGKSKEENGGIEMICKEGDFVKNVASNKNGLRVKMVLTKE 60
           MGNCMETCKVNRFKGGGGEESGKSKEENGGIEMICKEGDFVKNVASNKNGLRVKMVLTKE
Sbjct: 1   MGNCMETCKVNRFKGGGGEESGKSKEENGGIEMICKEGDFVKNVASNKNGLRVKMVLTKE 60

Query: 61  ELQWLMMQLSNRDGNGGKRIEDVLGELEKGRKKVSGHSWKPSLDSITEIPEVVEMNR 118
           ELQWLMMQLSNRDGNGGKRIEDVLGELEKGRKKVSGHSWKPSLDSITEIPEVVEMNR
Sbjct: 61  ELQWLMMQLSNRDGNGGKRIEDVLGELEKGRKKVSGHSWKPSLDSITEIPEVVEMNR 117

[Close]

BLAST of Spo21398.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F7J1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g098810 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.400e-34
Identity = 84/119 (70.59%), Postives = 95/119 (79.83%), Query Frame = 1


		  
Query: 1   MGNCMETCKVNRFKGGGGEESGKSKEENGGIEM--ICKEGDFVKNVASNKNGLRVKMVLT 60
           MGNCMET K+N      G+E  K K + G IEM  + KEG+FVK+V SNKNGLRVKMVLT
Sbjct: 1   MGNCMETSKIN--NNLKGKEERKIKVKEGKIEMGFVGKEGEFVKDVVSNKNGLRVKMVLT 60

Query: 61  KEELQWLMMQLSNRDGNGGKRIEDVLGELEKGRKKVSGHSWKPSLDSITEIPEVVEMNR 118
           KEELQWLM QLSNR+ +G KRIEDVLGE+EKGR K   HSWKPSLDSITEIPEV+EMN+
Sbjct: 61  KEELQWLMQQLSNRE-DGRKRIEDVLGEIEKGRSKKGCHSWKPSLDSITEIPEVLEMNK 116

[Close]

BLAST of Spo21398.1 vs. UniProtKB/TrEMBL
Match: W9RFV8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001388 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.800e-19
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1


		  
Query: 1   MGNCMETCKV-NRFKGGGGEESGKSKEE--NGGIEMICKEGDFVKNVASNKNG-LRVKMV 60
           MGNCMETC   N+ K     +  K ++   N   E     G FVK  +  + G LRVK+V
Sbjct: 1   MGNCMETCNQRNQAKEMHDHDQRKQEDHDHNQRDETEINGGPFVKESSLGEKGKLRVKIV 60

Query: 61  LTKEELQWLMMQLSNRDGNGGKRIEDVLGELEKGRKKVSGHSWKPSLDSITEIPEVVEMN 118
           +TKEEL+WLM+QL+N+   GGK +EDVLGE+E+GR KV   SWKPSL+SI E PEVVEM+
Sbjct: 61  VTKEELEWLMVQLNNK---GGKSLEDVLGEIERGRAKVE-VSWKPSLESIMECPEVVEMD 117

[Close]

BLAST of Spo21398.1 vs. UniProtKB/TrEMBL
Match: I3T2F8_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.100e-18
Identity = 58/119 (48.74%), Postives = 81/119 (68.07%), Query Frame = 1


		  
Query: 1   MGNCMETCKVNRFKGGGGEESGKSKEENGGIEMICKEGDFVK-NVASNKNGLRVKMVLTK 60
           MGNCMETC + +      ++  + K+E    +   +   FVK N +  KNGLR+K+VLTK
Sbjct: 1   MGNCMETCTLRKQDAMRMQKKQQQKQEE---DTKTRSSGFVKINDSKGKNGLRMKIVLTK 60

Query: 61  EELQWLMMQLSNRDGNGGKRIEDVLGELEKGRK-KVSGHSWKPSLDSITEIPEVVEMNR 118
           EEL+WLM+QL+ +   GG ++E VLGE+E+GR+ KV G SWKPSL+SI E PE  +M+R
Sbjct: 61  EELKWLMLQLNEK---GGMKLEKVLGEIERGREIKVEG-SWKPSLESIVEAPESPDMDR 112

[Close]

BLAST of Spo21398.1 vs. UniProtKB/TrEMBL
Match: F6HU23_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g01450 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.000e-16
Identity = 60/123 (48.78%), Postives = 77/123 (62.60%), Query Frame = 1


		  
Query: 1   MGNCMETCKVNRFKGGGGEESGKSKEENGGIEMICKEGDFVKNVASNKNGLRVKMVLTKE 60
           MGNCMETC+         EE  +++E+ GG E   K+G        +  G+RVK+VLTKE
Sbjct: 1   MGNCMETCRERH----EAEEEERNQEKQGGEEE--KKG--------SGYGVRVKIVLTKE 60

Query: 61  ELQWLMMQLSNRDGNGGKRIEDVLGELEKGRK------KVSGHSWKPSLDSITEIPEVVE 118
           EL+W+M QL ++   GGK +EDVL E+E+GR       KV G  WKPSL+SI E PEVVE
Sbjct: 61  ELEWMMFQLKDK---GGKSLEDVLREIERGRSSAATAGKVEG--WKPSLESIMESPEVVE 104

[Close]

BLAST of Spo21398.1 vs. TAIR (Arabidopsis)
Match: AT1G64405.1 (unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.100e-9
Identity = 48/128 (37.50%), Postives = 68/128 (53.12%), Query Frame = 1


		  
Query: 1   MGNCMETCKVNRFKGGGGEESGKSKEENGGIEMICKEGDFVKNVASNKNGLRVKMVLTKE 60
           MGNCME     R+  G GEE GK +      E    +GD   +      G++VK+VLT+ 
Sbjct: 1   MGNCME-----RWMQGEGEE-GKIEVTERAKESFKLDGD---DNEDGHGGMKVKIVLTRH 60

Query: 61  ELQWLMMQLSNRDGNGGKRI-EDVLGELEKGRKKVSGH----------SWKPSLDSITEI 118
           EL   ++Q+ NR  +G   I +DV+ ELEK   + S            +W+P+L+SI E 
Sbjct: 61  ELDMFLLQM-NRSHDGNLMITKDVMVELEKRIIRASSFSSLSSSPSSIAWEPALESILEC 118

The following BLAST results are available for this feature:

BLAST of Spo21398.1 vs. NCBI nr
BLAST of Spo21398.1 vs. UniProtKB/TrEMBL
BLAST of Spo21398.1 vs. ExPASy Swiss-Prot
BLAST of Spo21398.1 vs. TAIR (Arabidopsis)

BLAST of Spo21398.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902196818\|gb\|KNA13222.1\|	3.6e-60	100.	hypothetical protein SOVF_1186...	[more]
gi\|870860608\|gb\|KMT11916.1\|	2.0e-34	70.5	hypothetical protein BVRB_5g09...	[more]
gi\|703088078\|ref\|XP_010093440.1\|	4.1e-19	52.8	hypothetical protein L484_0013...	[more]
gi\|1009156774\|ref\|XP_015896418.1\|	3.5e-18	49.5	PREDICTED: uncharacterized pro...	[more]
gi\|388517277\|gb\|AFK46700.1\|	5.9e-18	48.7	unknown [Lotus japonicus]	[more]

BLAST of Spo21398.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R350_SPIOL	2.5e-60	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8F7J1_BETVU	1.4e-34	70.5	Uncharacterized protein OS=Bet...	[more]
W9RFV8_9ROSA	2.8e-19	52.8	Uncharacterized protein OS=Mor...	[more]
I3T2F8_LOTJA	4.1e-18	48.7	Uncharacterized protein OS=Lot...	[more]
F6HU23_VITVI	5.0e-16	48.7	Putative uncharacterized prote...	[more]

BLAST of Spo21398.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo21398.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G64405.1	3.1e-9	37.5	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35704	FAMILY NOT NAMED	coord: 1..117 score: 3.6