Spo21383.1 (mRNA) | SpinachBase

Overview


Name	Spo21383.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Dbj\|BAA92898.1
Location	chr6 : 39585325 .. 39588683 (+)
Sequence length	1359

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCCATGTCTTGTCATATTTTTTCCCAAAAAAATTACGGCCCAGGCTCCGCACATGTGTTGAACCGGGATTTTTTCTTTTTCGTGTCGGCTCAGCCCGGCCCACAGTGATATTTAGCAGGACCGGTCTCTAAAACCGATGGCCCGAGTTCAAATCTTGTAGAAACCGTTATCCCTCAAAAATTCTGAATAGAAAGCTGAGCTTAATCCTCAACCACTCGACCAAGAAAGGAGTGTGGAAGAAGAAACAGAGCACATAGATTGATTGGTGAAGGAGAAGAAAAATGAGAGGTCTTGTAACTTTACCACCATCTGTATCCCTCTTCTTCTTCTCTCATCATCCCCCTAATAATTCATGTCCTCAATTTTTACACCAGAAAACTACTCAACAGCAGCAGCAATTCATCTGTCTCTCATCTCCAACCTCCTCTTCATCGGTTGTTGAAGAAGAACAAGATTCACCTTTGAATTTCAGGTACATTTATTATTTTCTGGATTCTTCTTCCTTCTCTATTAAGTATGTTTATTGTGCTAAACAGCTGATTATCTATTAATTTACTGATTACCATTATAGAGTAATTTTACTAAGAAAATCAATAATTTTGGGAAATTAGGATTTTGGGGTTTGGTGGGAAATTGCTGCAACTGTTTCTATTGAATTGGGGTTTTGGCTAAACAAGTAGTACTCCCTCCGTCCCTCAAACCGTTGCGGAGTTTAATACATTTGAATTGACTTATTAATTTAGTGGGTGTTTGTTGATAGTGGGGTATTTTTTAATATAGTTAGTGGAAAATGTGTAAGGGTGGGGAGTGGTGAGTGAGGGCTATTGATTTTTAAATGATTTTTTGTAGGGAATAGGGGTGTAGGTGGAATAGTAGGTAAGTGTGAGAAATAATATAATATTGGTAAAGATTTCCATTTATAGAAGCTGTGCAAGTATTAAGGGACGGCCCGAAAAGGAAAGCGGTGCAAGTATTAAGGGACGGAGGGAGTAATAAACTAACAATCTAAAGCTGTGTTTGGATTTAATGAATATACTCCCTCCGTCCCGGAATACTTGAAACGCTTTCCTTATCGGGTCGTCCCGGATTACTTGAAACGCTTCTAAAAATGGATACTTTACATAATATTCTATTATTTTCTCACCTTATCTAAGAGCCCACCAACAACCCTACTACCCCAAATAAACATTAAAGAATTCAAGATCCCCCACCACATCCCACTATCTATATTAAAAAAATACCCCACTACTAACTACCTTTCAATTAAATAAGAAGTCAATTATAATGAATTAAACTCCGTGTCGGTCAAACGGTTTCAAGTATTCCGGGACGGAGGGAGTACATTGATAGAAGGTTCTTGCTAGAAAAACTAATGAGGGTGAAGATGAATCATGGGTGGAAAATTTGCCAATTTTTCATCAAATATGGGTGAAAAACAATTTCCACCATTGAAAAACTTTAATGTTAGTGTAGGAAATGGATTAACTTGAATGTTAGTCCAAGAATAGCAAAAAAATTGCCTATCTTGATGATGTTTTTGGGTTTTTAAGATTGGCAAATCACGGAAAATGTTTGGTTAGCCTTAAGGGTTAGCAACCCTTAAGATACCTATAACATAAAATAATATATAAGTGTAATTAATTGGAGAGATAAAGTGTTATAAGGTGAGTTTCAATGCATTTGTAACCAATCACAATTTAATATTTAAAGGGTTACTAACCCTTAGGGTTACTCTATCATTATCCGCAAATCACATACCACCTCCACAGAAAGGTGATTCTTTCAAGGAATAATTTTACTTTCTTCCAAGAAAATCTCATATTTTCAAAGGTGATTTCTTTGGAAAAAGAGCATTTATCCTTGGAAGAATCATTTGCCCACCTCCACTCAAATCCTCGCATAAATCCGGGATTAGGTAGTTGTTGCAAATTATATATGCTCCATAGTTTTCTAGAGAAGTGTTTAGGAAAAGGCTACATGTACACCTGGGGTACAAAATTCTCTTGTACAACACCATTAATTTGTTGACACATCATCAAACCCACTAAAAAATAAGAATGAAAGACAATAAATATGTCATTTCAACCAATAAAAAAACATGGTGTACAAGATGTCTTATACACTAGGTGTACATGTAGTAGGATCCAGGTGTTTACAAAGAATAATTTCACTTCTTCCGGGGAAATCATTGTTTTCTCAAAGATGATTTCCTTGGAAGAAGTGAATTTATCCTTGGAATAACCATTTTCCCACCTCCACTGCAATCCTCGCATAAAGCCGGATTAGTTAGTTGTTGCAAATATATATATGCTCCATAGTTTTCGAAAGAAGGGGTTCGTTGTTGTATGGTGTTCTTGTACAAGTGTTTCCCTCCTGAATGTCATTGTTTATGTGTAGCGGGTGTAAGGGTTGTGGTAGAGAGCAGATAGAAAATGGGTGCAACAGTGAGGGTCGGATTCAAGGCGGAATTGCTACAATACCAGGCTTTGGTTGGTGGCCGATAAAGGCTTATAGGCCTTGTCCTGGTTTTCTTGCATCTGGTGGCAACTACAGGCGACGCGGTCAAAGCATGGATGAGGTTGCCTTCGGAGGGGGCAAAAGGGTAACTTCCATGGATGACTCCGAGACAAAGTATGACCTCCATCATTAGTTATTTGCAGTTCATCTTTTATCTGTGTCTGAGATAATTCCTTTTGTTATTTGCAGGAAGAGAGGAAAGAACAGAAATCAATTCAAGGGATGAAAATTTCCTCATCAAATTATCAGACTTGTGTTTGCATAAGAGAGATGCTTCCAAAGTTCTGTTGATATATATTTTGTATAAATTGTCACTGCAAATATATATAGAATGTGCTAAGCATCAGTATTTGAGGAGGAACAGCTTCTTGATTCAGAGCAGAATGTTGTAGCTTGTAAAGTCCCTTGGACAACATGATCCCTTAAAGAATATTGAAAAGTTCCTAATGTGCGTTTTAAATCCCTTGAATTTTGCAGCAGGCTTAAAGAAGCTAAATTAGAGAACATTGAACCAACACAAACCCGACTGCTTCTTGAAAGTTCAAAACAGAACTCTCGACTGTAAATATTGTCATGGTCACTCGTCTAATCAAATGCTTGTACTTCCCCCGTTCCTTAAATATTGCACCATAGTTCACTTTAGTGTCCATTTCTGATGGAGCCAAAGATTCATTTATTCTTTTGGCTGTGGGATGTAATGGACTAAATCAAAATTGCTCTTAATACCTCTTCGCTTCCTTTCCATGAAGTAGAAGATGGTCGTCCTGTTGTTGTCCCGTTATCGCTTTTGGGTCAATTGGAAACAACCTCTCTGCAATTGCAGGGGTAAGGTTGCGTACGT

mRNA sequence

TGCCATGTCTTGTCATATTTTTTCCCAAAAAAATTACGGCCCAGGCTCCGCACATGTGTTGAACCGGGATTTTTTCTTTTTCGTGTCGGCTCAGCCCGGCCCACAGTGATATTTAGCAGGACCGGTCTCTAAAACCGATGGCCCGAGTTCAAATCTTGTAGAAACCGTTATCCCTCAAAAATTCTGAATAGAAAGCTGAGCTTAATCCTCAACCACTCGACCAAGAAAGGAGTGTGGAAGAAGAAACAGAGCACATAGATTGATTGGTGAAGGAGAAGAAAAATGAGAGGTCTTGTAACTTTACCACCATCTGTATCCCTCTTCTTCTTCTCTCATCATCCCCCTAATAATTCATGTCCTCAATTTTTACACCAGAAAACTACTCAACAGCAGCAGCAATTCATCTGTCTCTCATCTCCAACCTCCTCTTCATCGGTTGTTGAAGAAGAACAAGATTCACCTTTGAATTTCAGCGGGTGTAAGGGTTGTGGTAGAGAGCAGATAGAAAATGGGTGCAACAGTGAGGGTCGGATTCAAGGCGGAATTGCTACAATACCAGGCTTTGGTTGGTGGCCGATAAAGGCTTATAGGCCTTGTCCTGGTTTTCTTGCATCTGGTGGCAACTACAGGCGACGCGGTCAAAGCATGGATGAGGTTGCCTTCGGAGGGGGCAAAAGGGTAACTTCCATGGATGACTCCGAGACAAAGAAGAGAGGAAAGAACAGAAATCAATTCAAGGGATGAAAATTTCCTCATCAAATTATCAGACTTGTGTTTGCATAAGAGAGATGCTTCCAAAGTTCTGTTGATATATATTTTGTATAAATTGTCACTGCAAATATATATAGAATGTGCTAAGCATCAGTATTTGAGGAGGAACAGCTTCTTGATTCAGAGCAGAATGTTGTAGCTTGTAAAGTCCCTTGGACAACATGATCCCTTAAAGAATATTGAAAAGTTCCTAATGTGCGTTTTAAATCCCTTGAATTTTGCAGCAGGCTTAAAGAAGCTAAATTAGAGAACATTGAACCAACACAAACCCGACTGCTTCTTGAAAGTTCAAAACAGAACTCTCGACTGTAAATATTGTCATGGTCACTCGTCTAATCAAATGCTTGTACTTCCCCCGTTCCTTAAATATTGCACCATAGTTCACTTTAGTGTCCATTTCTGATGGAGCCAAAGATTCATTTATTCTTTTGGCTGTGGGATGTAATGGACTAAATCAAAATTGCTCTTAATACCTCTTCGCTTCCTTTCCATGAAGTAGAAGATGGTCGTCCTGTTGTTGTCCCGTTATCGCTTTTGGGTCAATTGGAAACAACCTCTCTGCAATTGCAGGGGTAAGGTTGCGTACGT

Coding sequence (CDS)

ATGAGAGGTCTTGTAACTTTACCACCATCTGTATCCCTCTTCTTCTTCTCTCATCATCCCCCTAATAATTCATGTCCTCAATTTTTACACCAGAAAACTACTCAACAGCAGCAGCAATTCATCTGTCTCTCATCTCCAACCTCCTCTTCATCGGTTGTTGAAGAAGAACAAGATTCACCTTTGAATTTCAGCGGGTGTAAGGGTTGTGGTAGAGAGCAGATAGAAAATGGGTGCAACAGTGAGGGTCGGATTCAAGGCGGAATTGCTACAATACCAGGCTTTGGTTGGTGGCCGATAAAGGCTTATAGGCCTTGTCCTGGTTTTCTTGCATCTGGTGGCAACTACAGGCGACGCGGTCAAAGCATGGATGAGGTTGCCTTCGGAGGGGGCAAAAGGGTAACTTCCATGGATGACTCCGAGACAAAGAAGAGAGGAAAGAACAGAAATCAATTCAAGGGATGA

Protein sequence

MRGLVTLPPSVSLFFFSHHPPNNSCPQFLHQKTTQQQQQFICLSSPTSSSSVVEEEQDSPLNFSGCKGCGREQIENGCNSEGRIQGGIATIPGFGWWPIKAYRPCPGFLASGGNYRRRGQSMDEVAFGGGKRVTSMDDSETKKRGKNRNQFKG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo21383	Spo21383	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo21383.1	Spo21383.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21383.1.exon.1	Spo21383.1.exon.1	exon
Spo21383.1.exon.2	Spo21383.1.exon.2	exon
Spo21383.1.exon.3	Spo21383.1.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21383.1.utr5p.1	Spo21383.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21383.1.CDS.1	Spo21383.1.CDS.1	CDS
Spo21383.1.CDS.2	Spo21383.1.CDS.2	CDS
Spo21383.1.CDS.3	Spo21383.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21383.1.utr3p.1	Spo21383.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo21383.1 vs. NCBI nr
Match: gi|902190254|gb|KNA11577.1| (hypothetical protein SOVF_133900 [Spinacia oleracea])

HSP 1 Score: 320.1 bits (819), Expect = 2.100e-84
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1


		  
Query: 1   MRGLVTLPPSVSLFFFSHHPPNNSCPQFLHQKTTQQQQQFICLSSPTSSSSVVEEEQDSP 60
           MRGLVTLPPSVSLFFFSHHPPNNSCPQFLHQKTTQQQQQFICLSSPTSSSSVVEEEQDSP
Sbjct: 1   MRGLVTLPPSVSLFFFSHHPPNNSCPQFLHQKTTQQQQQFICLSSPTSSSSVVEEEQDSP 60

Query: 61  LNFSGCKGCGREQIENGCNSEGRIQGGIATIPGFGWWPIKAYRPCPGFLASGGNYRRRGQ 120
           LNFSGCKGCGREQIENGCNSEGRIQGGIATIPGFGWWPIKAYRPCPGFLASGGNYRRRGQ
Sbjct: 61  LNFSGCKGCGREQIENGCNSEGRIQGGIATIPGFGWWPIKAYRPCPGFLASGGNYRRRGQ 120

Query: 121 SMDEVAFGGGKRVTSMDDSETKKRGKNRNQFKG 154
           SMDEVAFGGGKRVTSMDDSETKKRGKNRNQFKG
Sbjct: 121 SMDEVAFGGGKRVTSMDDSETKKRGKNRNQFKG 153

[Close]

BLAST of Spo21383.1 vs. NCBI nr
Match: gi|870860581|gb|KMT11889.1| (hypothetical protein BVRB_5g098570 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 187.6 bits (475), Expect = 1.600e-44
Identity = 108/169 (63.91%), Postives = 122/169 (72.19%), Query Frame = 1


		  
Query: 1   MRGLVTLPP-SVSLFFFSHHPPNNSCPQFLHQKTTQQQQQ----FICLSSPTSSSSVVEE 60
           MR +V+  P S S+F FS    N S P+FL   T+QQQ +    F+ LSS ++SSSVVE+
Sbjct: 1   MRCIVSSSPLSPSIFTFS----NESSPKFLQLTTSQQQHKKVASFVFLSS-SNSSSVVED 60

Query: 61  EQDSPL---------NFSGCKGCGREQIENGCNSEGRIQGGIATIPGFGWWPIKAYRPCP 120
           +QDS           NFSGCK CGREQIE GCN EGRIQGGIAT PG GWWPIKAYRPCP
Sbjct: 61  QQDSSSVVQSVNNDNNFSGCKACGREQIEGGCNGEGRIQGGIATFPGLGWWPIKAYRPCP 120

Query: 121 GFLASGGNYRRRGQSMDEVAFGGGKRVTSM---DDSETKKRGKNRNQFK 153
           GFLASGGNYRRRGQSMDEVAFGGG+   SM   D+ ET K+GKNRNQ K
Sbjct: 121 GFLASGGNYRRRGQSMDEVAFGGGRGRPSMDNFDELETGKKGKNRNQVK 164

[Close]

BLAST of Spo21383.1 vs. NCBI nr
Match: gi|566162586|ref|XP_002303659.2| (hypothetical protein POPTR_0003s14160g [Populus trichocarpa])

HSP 1 Score: 149.4 bits (376), Expect = 5.000e-33
Identity = 81/142 (57.04%), Postives = 92/142 (64.79%), Query Frame = 1


		  
Query: 24  SCPQFLHQKTTQ-----QQQQFICLSSPTSSSSVVEEEQDSP---------------LNF 83
           SC    H  TT       +   I LSS +SSSS+    +D P               L  
Sbjct: 63  SCNSRFHSSTTTLIQYPSKSNIILLSSSSSSSSITSVVEDGPPPPSDALPATDDVDKLPL 122

Query: 84  SGCKGCGREQIENGCNSEGRIQGGIATIPGFGWWPIKAYRPCPGFLASGGNYRRRGQSMD 143
           SGCKGCGRE+IE GCN EGRIQGGIAT+PGFGWWPIKAYRPCPGFLASGG YRR+GQSMD
Sbjct: 123 SGCKGCGREEIEKGCNGEGRIQGGIATVPGFGWWPIKAYRPCPGFLASGGRYRRQGQSMD 182

[Close]

BLAST of Spo21383.1 vs. NCBI nr
Match: gi|514776875|ref|XP_004968574.1| (PREDICTED: uncharacterized protein LOC101755433 [Setaria italica])

HSP 1 Score: 149.4 bits (376), Expect = 5.000e-33
Identity = 78/152 (51.32%), Postives = 100/152 (65.79%), Query Frame = 1


		  
Query: 4   LVTLPPSVSLFFFSH--HPPNNSCPQFLHQKTTQQQQQFICLSSPTSSSSVVEEEQDSPL 63
           L+ LPP       SH  + P+++CP  LH+K    +   +C +S  +SSSVV +EQ+  +
Sbjct: 8   LLQLPPPALHNSLSHPSNQPSSACPP-LHKKP---RGDLLCCASSGASSSVVAKEQEEAV 67

Query: 64  -------------------NFSGCKGCGREQIENGCNSEGRIQGGIATIPGFGWWPIKAY 123
                              NF GC+GCGRE++E GCN EGRIQGGIA +PGFGWWPIKAY
Sbjct: 68  AAPSEEGYEPALLSYKDDPNFRGCRGCGREELERGCNGEGRIQGGIAAVPGFGWWPIKAY 127

Query: 124 RPCPGFLASGGNYRRRGQSMDEVAFGGGKRVT 135
           RPCPGF+ASGG YRR+GQSMD+VA G GK+V+
Sbjct: 128 RPCPGFVASGGRYRRQGQSMDDVASGRGKKVS 155

[Close]

BLAST of Spo21383.1 vs. NCBI nr
Match: gi|743843046|ref|XP_011026857.1| (PREDICTED: uncharacterized protein LOC105127308 [Populus euphratica])

HSP 1 Score: 148.7 bits (374), Expect = 8.500e-33
Identity = 75/125 (60.00%), Postives = 92/125 (73.60%), Query Frame = 1


		  
Query: 44  SSPTSSSSVVEEEQDSP-------------LNFSGCKGCGREQIENGCNSEGRIQGGIAT 103
           SSPTSS+SVVE+    P             L  SGCKGCGRE+IE GCN EGRIQGGIAT
Sbjct: 49  SSPTSSTSVVEDGPPPPSSDALPTTEDVDKLPLSGCKGCGREEIEKGCNGEGRIQGGIAT 108

Query: 104 IPGFGWWPIKAYRPCPGFLASGGNYRRRGQSMDEVAFGGGKRVTSM---DDSETKKRGKN 153
           +PGFGWWPIKAYRPCPGFL+SGG YRR+GQSMDEVAFG  ++ T +   ++ ET+K+ ++
Sbjct: 109 VPGFGWWPIKAYRPCPGFLSSGGRYRRQGQSMDEVAFGREQKETPVGISNEGETRKKRQD 168

[Close]

BLAST of Spo21383.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWC6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_133900 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 1.500e-84
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1


		  
Query: 1   MRGLVTLPPSVSLFFFSHHPPNNSCPQFLHQKTTQQQQQFICLSSPTSSSSVVEEEQDSP 60
           MRGLVTLPPSVSLFFFSHHPPNNSCPQFLHQKTTQQQQQFICLSSPTSSSSVVEEEQDSP
Sbjct: 1   MRGLVTLPPSVSLFFFSHHPPNNSCPQFLHQKTTQQQQQFICLSSPTSSSSVVEEEQDSP 60

Query: 61  LNFSGCKGCGREQIENGCNSEGRIQGGIATIPGFGWWPIKAYRPCPGFLASGGNYRRRGQ 120
           LNFSGCKGCGREQIENGCNSEGRIQGGIATIPGFGWWPIKAYRPCPGFLASGGNYRRRGQ
Sbjct: 61  LNFSGCKGCGREQIENGCNSEGRIQGGIATIPGFGWWPIKAYRPCPGFLASGGNYRRRGQ 120

Query: 121 SMDEVAFGGGKRVTSMDDSETKKRGKNRNQFKG 154
           SMDEVAFGGGKRVTSMDDSETKKRGKNRNQFKG
Sbjct: 121 SMDEVAFGGGKRVTSMDDSETKKRGKNRNQFKG 153

[Close]

BLAST of Spo21383.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CIH0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g098570 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.100e-44
Identity = 108/169 (63.91%), Postives = 122/169 (72.19%), Query Frame = 1


		  
Query: 1   MRGLVTLPP-SVSLFFFSHHPPNNSCPQFLHQKTTQQQQQ----FICLSSPTSSSSVVEE 60
           MR +V+  P S S+F FS    N S P+FL   T+QQQ +    F+ LSS ++SSSVVE+
Sbjct: 1   MRCIVSSSPLSPSIFTFS----NESSPKFLQLTTSQQQHKKVASFVFLSS-SNSSSVVED 60

Query: 61  EQDSPL---------NFSGCKGCGREQIENGCNSEGRIQGGIATIPGFGWWPIKAYRPCP 120
           +QDS           NFSGCK CGREQIE GCN EGRIQGGIAT PG GWWPIKAYRPCP
Sbjct: 61  QQDSSSVVQSVNNDNNFSGCKACGREQIEGGCNGEGRIQGGIATFPGLGWWPIKAYRPCP 120

Query: 121 GFLASGGNYRRRGQSMDEVAFGGGKRVTSM---DDSETKKRGKNRNQFK 153
           GFLASGGNYRRRGQSMDEVAFGGG+   SM   D+ ET K+GKNRNQ K
Sbjct: 121 GFLASGGNYRRRGQSMDEVAFGGGRGRPSMDNFDELETGKKGKNRNQVK 164

[Close]

BLAST of Spo21383.1 vs. UniProtKB/TrEMBL
Match: B9GXS2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s14160g PE=4 SV=2)

HSP 1 Score: 149.4 bits (376), Expect = 3.500e-33
Identity = 81/142 (57.04%), Postives = 92/142 (64.79%), Query Frame = 1


		  
Query: 24  SCPQFLHQKTTQ-----QQQQFICLSSPTSSSSVVEEEQDSP---------------LNF 83
           SC    H  TT       +   I LSS +SSSS+    +D P               L  
Sbjct: 63  SCNSRFHSSTTTLIQYPSKSNIILLSSSSSSSSITSVVEDGPPPPSDALPATDDVDKLPL 122

Query: 84  SGCKGCGREQIENGCNSEGRIQGGIATIPGFGWWPIKAYRPCPGFLASGGNYRRRGQSMD 143
           SGCKGCGRE+IE GCN EGRIQGGIAT+PGFGWWPIKAYRPCPGFLASGG YRR+GQSMD
Sbjct: 123 SGCKGCGREEIEKGCNGEGRIQGGIATVPGFGWWPIKAYRPCPGFLASGGRYRRQGQSMD 182

[Close]

BLAST of Spo21383.1 vs. UniProtKB/TrEMBL
Match: K3XMR0_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_003183mg PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.500e-33
Identity = 78/152 (51.32%), Postives = 100/152 (65.79%), Query Frame = 1


		  
Query: 4   LVTLPPSVSLFFFSH--HPPNNSCPQFLHQKTTQQQQQFICLSSPTSSSSVVEEEQDSPL 63
           L+ LPP       SH  + P+++CP  LH+K    +   +C +S  +SSSVV +EQ+  +
Sbjct: 8   LLQLPPPALHNSLSHPSNQPSSACPP-LHKKP---RGDLLCCASSGASSSVVAKEQEEAV 67

Query: 64  -------------------NFSGCKGCGREQIENGCNSEGRIQGGIATIPGFGWWPIKAY 123
                              NF GC+GCGRE++E GCN EGRIQGGIA +PGFGWWPIKAY
Sbjct: 68  AAPSEEGYEPALLSYKDDPNFRGCRGCGREELERGCNGEGRIQGGIAAVPGFGWWPIKAY 127

Query: 124 RPCPGFLASGGNYRRRGQSMDEVAFGGGKRVT 135
           RPCPGF+ASGG YRR+GQSMD+VA G GK+V+
Sbjct: 128 RPCPGFVASGGRYRRQGQSMDDVASGRGKKVS 155

[Close]

BLAST of Spo21383.1 vs. UniProtKB/TrEMBL
Match: B9GL39_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s10810g PE=4 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 1.300e-32
Identity = 78/129 (60.47%), Postives = 93/129 (72.09%), Query Frame = 1


		  
Query: 41  ICLSSP-TSSSSVVEEEQDSP-------------LNFSGCKGCGREQIENGCNSEGRIQG 100
           I L SP TSS+SVVE+    P             L  SGCKGCGRE+IE GCN EGRIQG
Sbjct: 45  IPLCSPSTSSTSVVEDGPPPPSSDALPTTEDVDKLPLSGCKGCGREEIEKGCNGEGRIQG 104

Query: 101 GIATIPGFGWWPIKAYRPCPGFLASGGNYRRRGQSMDEVAFGGGKRVTSM---DDSETKK 153
           GIAT+PGFGWWPIKAYRPCPGFLASGG YRR+GQSMDEVAFG  ++ T +   D+ ET+K
Sbjct: 105 GIATVPGFGWWPIKAYRPCPGFLASGGRYRRQGQSMDEVAFGREQKETPVGISDEGETRK 164

[Close]

BLAST of Spo21383.1 vs. TAIR (Arabidopsis)
Match: AT5G42070.1 (unknown protein)

HSP 1 Score: 139.4 bits (350), Expect = 1.800e-33
Identity = 69/127 (54.33%), Postives = 88/127 (69.29%), Query Frame = 1


		  
Query: 20  PPNNSCPQFLHQKTTQQQQQFICLSSPTSSSSVVEEEQDSPLNFSGCKGCGREQIENGCN 79
           P  +S   FL++ +       + LSS  SS    + + D+ L FSGC+ CG+E+ E+GCN
Sbjct: 25  PWPSSSSFFLNKSSKHHPHPLLSLSSSPSSVVETDNDDDNDLTFSGCRACGKEEKESGCN 84

Query: 80  SEGRIQGGIATIPGFGWWPIKAYRPCPGFLASGGNYRRRGQSMDEVAFGGG--KRVTSMD 139
            +GRIQGGIAT+PGFGWWPIKAYRPCP F+ +GG YRR GQSMDEVAFG G  K  TS+D
Sbjct: 85  GDGRIQGGIATVPGFGWWPIKAYRPCPAFVEAGGRYRRIGQSMDEVAFGRGDSKSSTSVD 144

Query: 140 DSETKKR 145
            S++  R
Sbjct: 145 TSDSLLR 151

The following BLAST results are available for this feature:

BLAST of Spo21383.1 vs. NCBI nr
BLAST of Spo21383.1 vs. UniProtKB/TrEMBL
BLAST of Spo21383.1 vs. ExPASy Swiss-Prot
BLAST of Spo21383.1 vs. TAIR (Arabidopsis)

BLAST of Spo21383.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902190254\|gb\|KNA11577.1\|	2.1e-84	100.	hypothetical protein SOVF_1339...	[more]
gi\|870860581\|gb\|KMT11889.1\|	1.6e-44	63.9	hypothetical protein BVRB_5g09...	[more]
gi\|566162586\|ref\|XP_002303659.2\|	5.0e-33	57.0	hypothetical protein POPTR_000...	[more]
gi\|514776875\|ref\|XP_004968574.1\|	5.0e-33	51.3	PREDICTED: uncharacterized pro...	[more]
gi\|743843046\|ref\|XP_011026857.1\|	8.5e-33	60.0	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo21383.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QWC6_SPIOL	1.5e-84	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CIH0_BETVU	1.1e-44	63.9	Uncharacterized protein OS=Bet...	[more]
B9GXS2_POPTR	3.5e-33	57.0	Uncharacterized protein OS=Pop...	[more]
K3XMR0_SETIT	3.5e-33	51.3	Uncharacterized protein OS=Set...	[more]
B9GL39_POPTR	1.3e-32	60.4	Uncharacterized protein OS=Pop...	[more]

BLAST of Spo21383.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo21383.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G42070.1	1.8e-33	54.3	unknown protein	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0009535	chloroplast thylakoid membrane