Spo25981.1 (mRNA)

Overview
NameSpo25981.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionRing finger protein, putative
Locationchr6 : 41261876 .. 41264138 (+)
Sequence length1065
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAACAAACAAAACAAAATGTTGCAGTTCTGCTTTTCCGCTTGCATGATTCAGTAGATCGTGTTAAAGGTTCACTGTTGACTTCGTTCATAGACATTATGTGCACAAATTTCAGGTACCATTATATTCTTGTTTAAGTTAGCTTGAATGTATATGAACTGTTTGGGGCACCTGGCACCAACACTTAATTTAGGAATTTTTAACAGTAATTTGTGAGTGTGTTGAAATAATATATGGGACTGGTTCGTATGTAGTATGTGTTTATATTTTTATAACGGGTTTGAGGACATTAGTGTTAAGAGCATATGTGCATTCTTTGTGTGCTTGCTTGTAATAATTGATCTTTCCAAATTAATTCCAGAAGTTTTGTTTTTTACTTATACAAAATGACTTAGGCTTTCCATTTTGTGTCAAACATATTGATTCTTGAGTGTAAGTATCCAACACTTCCATCACTACACACTCTGTATAGAGTCAAGATTTAGAATCTGAAACCTTATTGAAAAAATTGTGTCCCTTGGAAATAAATCTATTACTTTATACTAAAACAGACACCAGGAATGACACATGTCACTTCCTGGTGCAATTTTTTCCCGCCAAAAGCCTATTTCCTAAAATATATCTATTTTATTTATTTATTTAGTTTTTATCAGTTTTTATAAATGGATTATGCATGGAAACAAAATATTGGCTTACTAAATATGACAATAATAAATACCACATAATAACTTGCTCAAAATTATATTGAAATATTTTTGTCAAATCGGTATATCAATAATAGAAAATATATTTAGTCGATATTTGATCAAATTAGCATATGATGCACATAAAATATGTAATACGTAATAGGACAAAAGTTTCCTATTAGATGATTAAATGAATATGTTCAAGATTTATTAATTATGCATTGGCTTTAGGAGGAGAAATATTTTTTTAAAACAAATATGGTCAAACAATAATTTTAAAATATCCGTGCATGCACGGGATATAATCTAGTCATTCTCTATTCAAATGTGGATTTCGTTTTAATAAAAGAATACAGGAGAATTGTTATGTGGTCAGATTTGCTTTTCAATCTTCTTGGTTGATTATTGTTACTATTTTTACGAATTGCTTGACTTTTGCTTAATTGCTTCAAGGCCCAAACTCGGTATATTTTGCTGTTGCGGTTGCTGCTAATTAATTGTATGCAGGCTACAGTTTTGTTTCTTGCAAAACCCGATTGTATTACTTGGAACACTAATTTGGATGAAAATCAGCTGTTTTGGAAGGTATTAGATTTGTTTTTTCATGTTAGATGACATAGACCTTTTGATACCTTGACAATATGGCATTGAATAATTATGTTGGAGAGTTGGAGTGTGAATTTTGATATTTTAATTTTGATACAGGTTTACTGTTGCATCAATTCTACTGGCACAACTTGGAATCTGTGTAGGAGATTATGGTGATAATTTTAATTGGGGCGGAATTTTACATGGACATGAATGGGTTATTGAAATTTCACTAATATTAGGTATGTTTTTAATAATTGTTCTTATATTTCTTATTCGGCGTTTTTTCAAGAAAACGCAACAAAGCACACCACCTACTATCCAACTCCCCAATCTTCCCCCCGCCCAAGCCTCTGAAAATTTTACCAACCCCTCTAATGAAACCTATGTATTACGTAGATTACCGGAAGATATTTATAGGCGTTTTCCGGTAGATACATATTCAACTAAACGTTGTAATGACTTCAGTCATGAAGATTGTATGATATGTAATTTTCCTTTTGTTGATGGAGAGGAGCTTTGTATACTTCCTGTTTGCCGCCATGTATTTCACTCTCACTGTACTAGTTCATGGTTTTTAAGCCATGATTGTCGTTGTACAGTGTGCCGTCATGATTATTTTGACGGTTTTAATAATGATCAATTAGTAGTGTAAAAAACTATGTATGCTACATTATACATTTGTGTTCATACATTGGTTTCATTCATTGTGTGGTACTGGGTAAGAACTGGTAATAAGTTTCGAGAATTACTGGTAAATCTGGAAATAAACTTGTATTATCGAGTATTACTGTTGGTTGTTTTTATTTCCTCAATTCTGGAAATGTAATTTACATTGTAGTACCACCGAAAAAGATTGTTCTCCCTAAATTCTCATAATGTTCTCTATCATAGACTCCATAATGCCAGTTATCGGCATACTTTACAGTTTGTTTAGGGCTAATCTGTTGATGATTTGCATCTAAAACCCCAAATCCAGAACAAA

mRNA sequence

ATGAAAAAACAAACAAAACAAAATGTTGCAGTTCTGCTTTTCCGCTTGCATGATTCAGTAGATCGTGTTAAAGGTTCACTGTTGACTTCGTTCATAGACATTATGTGCACAAATTTCAGGCTACAGTTTTGTTTCTTGCAAAACCCGATTGTATTACTTGGAACACTAATTTGGATGAAAATCAGCTGTTTTGGAAGGTTTACTGTTGCATCAATTCTACTGGCACAACTTGGAATCTGTGTAGGAGATTATGGTGATAATTTTAATTGGGGCGGAATTTTACATGGACATGAATGGGTTATTGAAATTTCACTAATATTAGGTATGTTTTTAATAATTGTTCTTATATTTCTTATTCGGCGTTTTTTCAAGAAAACGCAACAAAGCACACCACCTACTATCCAACTCCCCAATCTTCCCCCCGCCCAAGCCTCTGAAAATTTTACCAACCCCTCTAATGAAACCTATGTATTACGTAGATTACCGGAAGATATTTATAGGCGTTTTCCGGTAGATACATATTCAACTAAACGTTGTAATGACTTCAGTCATGAAGATTGTATGATATGTAATTTTCCTTTTGTTGATGGAGAGGAGCTTTGTATACTTCCTGTTTGCCGCCATGTATTTCACTCTCACTGTACTAGTTCATGGTTTTTAAGCCATGATTGTCGTTGTACAGTGTGCCGTCATGATTATTTTGACGGTTTTAATAATGATCAATTAGTAGTGTAAAAAACTATGTATGCTACATTATACATTTGTGTTCATACATTGGTTTCATTCATTGTGTGGTACTGGGTAAGAACTGGTAATAAGTTTCGAGAATTACTGGTAAATCTGGAAATAAACTTGTATTATCGAGTATTACTGTTGGTTGTTTTTATTTCCTCAATTCTGGAAATGTAATTTACATTGTAGTACCACCGAAAAAGATTGTTCTCCCTAAATTCTCATAATGTTCTCTATCATAGACTCCATAATGCCAGTTATCGGCATACTTTACAGTTTGTTTAGGGCTAATCTGTTGATGATTTGCATCTAAAACCCCAAATCCAGAACAAA

Coding sequence (CDS)

ATGAAAAAACAAACAAAACAAAATGTTGCAGTTCTGCTTTTCCGCTTGCATGATTCAGTAGATCGTGTTAAAGGTTCACTGTTGACTTCGTTCATAGACATTATGTGCACAAATTTCAGGCTACAGTTTTGTTTCTTGCAAAACCCGATTGTATTACTTGGAACACTAATTTGGATGAAAATCAGCTGTTTTGGAAGGTTTACTGTTGCATCAATTCTACTGGCACAACTTGGAATCTGTGTAGGAGATTATGGTGATAATTTTAATTGGGGCGGAATTTTACATGGACATGAATGGGTTATTGAAATTTCACTAATATTAGGTATGTTTTTAATAATTGTTCTTATATTTCTTATTCGGCGTTTTTTCAAGAAAACGCAACAAAGCACACCACCTACTATCCAACTCCCCAATCTTCCCCCCGCCCAAGCCTCTGAAAATTTTACCAACCCCTCTAATGAAACCTATGTATTACGTAGATTACCGGAAGATATTTATAGGCGTTTTCCGGTAGATACATATTCAACTAAACGTTGTAATGACTTCAGTCATGAAGATTGTATGATATGTAATTTTCCTTTTGTTGATGGAGAGGAGCTTTGTATACTTCCTGTTTGCCGCCATGTATTTCACTCTCACTGTACTAGTTCATGGTTTTTAAGCCATGATTGTCGTTGTACAGTGTGCCGTCATGATTATTTTGACGGTTTTAATAATGATCAATTAGTAGTGTAA

Protein sequence

MKKQTKQNVAVLLFRLHDSVDRVKGSLLTSFIDIMCTNFRLQFCFLQNPIVLLGTLIWMKISCFGRFTVASILLAQLGICVGDYGDNFNWGGILHGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTNPSNETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHCTSSWFLSHDCRCTVCRHDYFDGFNNDQLVV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo25981Spo25981gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo25981.1Spo25981.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25981.1.exon.1Spo25981.1.exon.1exon
Spo25981.1.exon.2Spo25981.1.exon.2exon
Spo25981.1.exon.3Spo25981.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25981.1.CDS.1Spo25981.1.CDS.1CDS
Spo25981.1.CDS.2Spo25981.1.CDS.2CDS
Spo25981.1.CDS.3Spo25981.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25981.1.utr3p.1Spo25981.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo25981.1 vs. NCBI nr
Match: gi|950951178|ref|XP_014495591.1| (PREDICTED: RING-H2 finger protein ATL5-like [Vigna radiata var. radiata])

HSP 1 Score: 66.2 bits (160), Expect = 8.800e-8
Identity = 37/136 (27.21%), Postives = 67/136 (49.26%), Query Frame = 1 

		  

Query: 95  HGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTNPSNE 154
           + H   + +   + +FL+++LI L   + +  ++       L +  P   + +F+ P  +
Sbjct: 11  YSHNGKVMVGTAILLFLLVILIILFNVYVRYCRRLRRHGSLLSHSLP---TTSFSEPCLD 70

Query: 155 TYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHC 214
             V++ LP          T+S     + S +DC +C   F DG+ + +LP C+H FH+HC
Sbjct: 71  PSVIKSLP----------TFSFSAAVNSSLQDCAVCLSEFADGDRVRVLPNCKHGFHTHC 130

Query: 215 TSSWFLSHDCRCTVCR 231
             +WF SH   C +CR
Sbjct: 131 IDAWFASHS-TCPLCR 132
[Close]
BLAST of Spo25981.1 vs. NCBI nr
Match: gi|697181758|ref|XP_009599874.1| (PREDICTED: RING-H2 finger protein ATL78-like [Nicotiana tomentosiformis])

HSP 1 Score: 65.5 bits (158), Expect = 1.500e-7
Identity = 31/90 (34.44%), Postives = 46/90 (51.11%), Query Frame = 1 

		  

Query: 142 AQASENFTNPSNETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELC 201
           + +S N+TN S        + +   + FP+ TY+T+  +     +C+IC   FV GE++ 
Sbjct: 89  SDSSSNYTNASATKLPNNGIRKKALKMFPIITYTTELKHPGLDSECVICLSEFVAGEKVR 148

Query: 202 ILPVCRHVFHSHCTSSWFLSHDCRCTVCRH 232
           +LP C H FH  C   W  SH   C  CRH
Sbjct: 149 VLPKCSHGFHVRCIDKWLNSHS-SCPTCRH 177
[Close]
BLAST of Spo25981.1 vs. NCBI nr
Match: gi|901817015|gb|KMZ71056.1| (hypothetical protein ZOSMA_189G00170 [Zostera marina])

HSP 1 Score: 65.5 bits (158), Expect = 1.500e-7
Identity = 41/154 (26.62%), Postives = 70/154 (45.45%), Query Frame = 1 

		  

Query: 91  GGILHGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTN 150
           G  + G   VI ++++L +F+    IF +  FFK   +S+  +  +      +   +F  
Sbjct: 5   GSQVVGVSSVIVVAIVLFLFIATAFIFFMYVFFKSQWRSSTSSSAI-----TRYQFDFAE 64

Query: 151 PSNETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVF 210
             + +     L   I    PV  Y  +  +D +  +C +C    VDGE++ +LP C H F
Sbjct: 65  RDSVSAPRTSLDSAILHSLPVYIYKAENHSDATTLECAVCLSEVVDGEKIRLLPKCNHEF 124

Query: 211 HSHCTSSWFLSHDCRCTVCRHDYFDGFNNDQLVV 245
           H  C   WF SH   C +CR+      ++  LV+
Sbjct: 125 HLDCIDMWFHSHS-TCPLCRNPVAADASSSDLVI 152
[Close]
BLAST of Spo25981.1 vs. NCBI nr
Match: gi|571446647|ref|XP_006577152.1| (PREDICTED: RING-H2 finger protein ATL5-like [Glycine max])

HSP 1 Score: 65.1 bits (157), Expect = 2.000e-7
Identity = 34/136 (25.00%), Postives = 64/136 (47.06%), Query Frame = 1 

		  

Query: 95  HGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTNPSNE 154
           + H   + +   + +F++I++I     F +  ++             + A+ +  +P  +
Sbjct: 12  YAHNGKVMVGTAILLFILIIIIIFFHTFVRFCRRRRRRLFSRSLPTNSSAAASLDDPCLD 71

Query: 155 TYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHC 214
             V++ LP          T++       S +DC +C   F DG+E  +LP C+H FH+HC
Sbjct: 72  PSVIKSLP----------TFTFSAATHRSLQDCAVCLSEFADGDEGRVLPNCKHAFHAHC 131

Query: 215 TSSWFLSHDCRCTVCR 231
             +WF SH  +C +CR
Sbjct: 132 IDTWFGSHS-KCPLCR 136
[Close]
BLAST of Spo25981.1 vs. NCBI nr
Match: gi|657955790|ref|XP_008369369.1| (PREDICTED: RING-H2 finger protein ATL74-like [Malus domestica])

HSP 1 Score: 65.1 bits (157), Expect = 2.000e-7
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 1 

		  

Query: 161 LPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHCTSSWFL 220
           L + I RR P+  Y T    + +  DC IC   F+DG+++ +LP C H FH+ C  +WFL
Sbjct: 105 LKKSILRRIPIVIYGTGL--NIAATDCPICLGEFMDGQKVRLLPKCNHGFHARCIDTWFL 164

Query: 221 SHDCRCTVCRHDYFD 236
           SH   C  CRH   +
Sbjct: 165 SHS-SCPTCRHSLLE 176
[Close]
BLAST of Spo25981.1 vs. UniProtKB/TrEMBL
Match: A0A162NG11_PHYB8 (Uncharacterized protein OS=Phycomyces blakesleeanus (strain ATCC 8743b / FGSC 10004 / NBRC 33097 / NRRL 1555) GN=PHYBLDRAFT_172440 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.100e-8
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 1 

		  

Query: 162 PEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHCTSSWFLS 221
           P DI  + P+ T+  ++  D  HE+C IC   ++D + L  LP CRH FH+ C  +W  S
Sbjct: 199 PSDIVTKLPLRTFRREKSIDVDHEECAICLEDYIDEDTLRTLP-CRHEFHAGCVDAWLTS 258

Query: 222 HDCRCTVCRHD 233
           H   C +C++D
Sbjct: 259 HKKFCPICKYD 268
[Close]
BLAST of Spo25981.1 vs. UniProtKB/TrEMBL
Match: A0A0K9PQ07_ZOSMR (Uncharacterized protein OS=Zostera marina GN=ZOSMA_189G00170 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.000e-7
Identity = 41/154 (26.62%), Postives = 70/154 (45.45%), Query Frame = 1 

		  

Query: 91  GGILHGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTN 150
           G  + G   VI ++++L +F+    IF +  FFK   +S+  +  +      +   +F  
Sbjct: 5   GSQVVGVSSVIVVAIVLFLFIATAFIFFMYVFFKSQWRSSTSSSAI-----TRYQFDFAE 64

Query: 151 PSNETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVF 210
             + +     L   I    PV  Y  +  +D +  +C +C    VDGE++ +LP C H F
Sbjct: 65  RDSVSAPRTSLDSAILHSLPVYIYKAENHSDATTLECAVCLSEVVDGEKIRLLPKCNHEF 124

Query: 211 HSHCTSSWFLSHDCRCTVCRHDYFDGFNNDQLVV 245
           H  C   WF SH   C +CR+      ++  LV+
Sbjct: 125 HLDCIDMWFHSHS-TCPLCRNPVAADASSSDLVI 152
[Close]
BLAST of Spo25981.1 vs. UniProtKB/TrEMBL
Match: I1JQN2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G215500 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.400e-7
Identity = 34/136 (25.00%), Postives = 64/136 (47.06%), Query Frame = 1 

		  

Query: 95  HGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTNPSNE 154
           + H   + +   + +F++I++I     F +  ++             + A+ +  +P  +
Sbjct: 12  YAHNGKVMVGTAILLFILIIIIIFFHTFVRFCRRRRRRLFSRSLPTNSSAAASLDDPCLD 71

Query: 155 TYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHC 214
             V++ LP          T++       S +DC +C   F DG+E  +LP C+H FH+HC
Sbjct: 72  PSVIKSLP----------TFTFSAATHRSLQDCAVCLSEFADGDEGRVLPNCKHAFHAHC 131

Query: 215 TSSWFLSHDCRCTVCR 231
             +WF SH  +C +CR
Sbjct: 132 IDTWFGSHS-KCPLCR 136
[Close]
BLAST of Spo25981.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CT32_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g042470 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.400e-7
Identity = 31/87 (35.63%), Postives = 46/87 (52.87%), Query Frame = 1 

		  

Query: 158 LRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHCTSS 217
           +R++P  +Y      T S +  N+    +CMIC   FV+GE + +LP C+H FHS C  +
Sbjct: 103 IRQIPTTLYHI----TSSGRTINNVMSTECMICLGEFVEGENIKVLPKCKHGFHSKCIDT 162

Query: 218 WFLSHDCRCTVCRHDYFDGFNNDQLVV 245
           W LSH   C  CR    +   N  ++V
Sbjct: 163 WLLSHS-TCPTCRQSLSEWARNGAILV 184
[Close]
BLAST of Spo25981.1 vs. UniProtKB/TrEMBL
Match: M1A638_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400006044 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.000e-7
Identity = 31/82 (37.80%), Postives = 43/82 (52.44%), Query Frame = 1 

		  

Query: 150 NPSNETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHV 209
           NPS+   V R + +   + FPV TY+T+  +     +C+IC   F  GE++ +LP C H 
Sbjct: 101 NPSSTKLVNRGIEKKTLKTFPVITYTTELKHPGFDSECVICLSEFGIGEKIKVLPKCNHG 160

Query: 210 FHSHCTSSWFLSHDCRCTVCRH 232
           FH  C   W  SH   C  CRH
Sbjct: 161 FHVKCIDKWLNSHS-SCPTCRH 181
[Close]
BLAST of Spo25981.1 vs. ExPASy Swiss-Prot
Match: ATL76_ARATH (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.000e-8
Identity = 43/141 (30.50%), Postives = 67/141 (47.52%), Query Frame = 1 

		  

Query: 94  LHGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQ---STPPTIQLPNLPPAQASENFTN 153
           L G+  ++   LI G+   + L ++IR  F+++ +   S P    + +L   ++S N   
Sbjct: 54  LKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEP----ISSLSTPRSSSN--- 113

Query: 154 PSNETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVF 213
                   + + +   R FPV +YS +       E+C+IC   FV GE+L +LP C H F
Sbjct: 114 --------KGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGF 173

Query: 214 HSHCTSSWFLSHDCRCTVCRH 232
           H  C   W L H   C  CRH
Sbjct: 174 HVRCIDKW-LQHHLTCPKCRH 178
[Close]
BLAST of Spo25981.1 vs. ExPASy Swiss-Prot
Match: ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-7
Identity = 25/69 (36.23%), Postives = 35/69 (50.72%), Query Frame = 1 

		  

Query: 167 RRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHCTSSWFLSHDCRC 226
           ++FPV  Y +      +  +C IC   F DGE + +LP C H FH  C  +W +SH   C
Sbjct: 86  KKFPVAEYGSGEVK-IAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHS-SC 145

Query: 227 TVCRHDYFD 236
             CRH   +
Sbjct: 146 PNCRHSLIE 152
[Close]
BLAST of Spo25981.1 vs. ExPASy Swiss-Prot
Match: ATL10_ARATH (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-7
Identity = 41/141 (29.08%), Postives = 65/141 (46.10%), Query Frame = 1 

		  

Query: 94  LHGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQ---STPPTIQLPNLPPAQASENFTN 153
           L G+  ++   LI G+   + L ++IR   +++ +   S P    +P+L   + S N   
Sbjct: 54  LSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEP----VPSLSSTRGSSN--- 113

Query: 154 PSNETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVF 213
                   + + +   R FPV +YS +       E+C+IC   FV GE+L +LP C H F
Sbjct: 114 --------KGIKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGF 173

Query: 214 HSHCTSSWFLSHDCRCTVCRH 232
           H  C   W   H   C  CR+
Sbjct: 174 HVRCIDKWLQQH-LTCPKCRN 178
[Close]
BLAST of Spo25981.1 vs. ExPASy Swiss-Prot
Match: ATL75_ARATH (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.700e-7
Identity = 41/138 (29.71%), Postives = 62/138 (44.93%), Query Frame = 1 

		  

Query: 94  LHGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTNPSN 153
           L G+  ++   LI G+   + L ++IR  F++T  S   +  +  L     S N      
Sbjct: 55  LSGNVLMLLSVLICGIICCLGLHYIIRCAFRRTS-SFMISEPIAGLSTPCGSSN------ 114

Query: 154 ETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSH 213
                + + +   R FPV +YS +       E+C+IC   FV GE++ +LP C H FH  
Sbjct: 115 -----KGINKKALRMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVR 174

Query: 214 CTSSWFLSHDCRCTVCRH 232
           C   W   H   C  CRH
Sbjct: 175 CIDKWLQQH-LTCPKCRH 179
[Close]
BLAST of Spo25981.1 vs. ExPASy Swiss-Prot
Match: ATL73_ARATH (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.300e-6
Identity = 37/139 (26.62%), Postives = 62/139 (44.60%), Query Frame = 1 

		  

Query: 97  HEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTNPSNETY 156
           H  +I  +L+  +   + +  ++R   + T++ TP      N  P   + N         
Sbjct: 40  HMVIILAALLCALICALGINSVLRCVLRCTRRFTP------NEDPVDTNAN--------- 99

Query: 157 VLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHCTS 216
           V + + +   +  PVD+YS +        +C+IC   FV+GE + +LP C H FH  C  
Sbjct: 100 VAKGIKKRALKVIPVDSYSPEL--KMKATECLICLGDFVEGETVRVLPKCNHGFHVKCID 159

Query: 217 SWFLSHDCRCTVCRHDYFD 236
           +W LSH   C  CR    +
Sbjct: 160 TWLLSHS-SCPTCRQSLLE 160
[Close]
BLAST of Spo25981.1 vs. TAIR (Arabidopsis)
Match: AT1G49210.1 (RING/U-box superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 2.200e-9
Identity = 43/141 (30.50%), Postives = 67/141 (47.52%), Query Frame = 1 

		  

Query: 94  LHGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQ---STPPTIQLPNLPPAQASENFTN 153
           L G+  ++   LI G+   + L ++IR  F+++ +   S P    + +L   ++S N   
Sbjct: 54  LKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEP----ISSLSTPRSSSN--- 113

Query: 154 PSNETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVF 213
                   + + +   R FPV +YS +       E+C+IC   FV GE+L +LP C H F
Sbjct: 114 --------KGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGF 173

Query: 214 HSHCTSSWFLSHDCRCTVCRH 232
           H  C   W L H   C  CRH
Sbjct: 174 HVRCIDKW-LQHHLTCPKCRH 178
[Close]
BLAST of Spo25981.1 vs. TAIR (Arabidopsis)
Match: AT5G01880.1 (RING/U-box superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 3.200e-8
Identity = 25/69 (36.23%), Postives = 35/69 (50.72%), Query Frame = 1 

		  

Query: 167 RRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHCTSSWFLSHDCRC 226
           ++FPV  Y +      +  +C IC   F DGE + +LP C H FH  C  +W +SH   C
Sbjct: 86  KKFPVAEYGSGEVK-IAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHS-SC 145

Query: 227 TVCRHDYFD 236
             CRH   +
Sbjct: 146 PNCRHSLIE 152
[Close]
BLAST of Spo25981.1 vs. TAIR (Arabidopsis)
Match: AT1G49220.1 (RING/U-box superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 3.200e-8
Identity = 41/141 (29.08%), Postives = 65/141 (46.10%), Query Frame = 1 

		  

Query: 94  LHGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQ---STPPTIQLPNLPPAQASENFTN 153
           L G+  ++   LI G+   + L ++IR   +++ +   S P    +P+L   + S N   
Sbjct: 54  LSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEP----VPSLSSTRGSSN--- 113

Query: 154 PSNETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVF 213
                   + + +   R FPV +YS +       E+C+IC   FV GE+L +LP C H F
Sbjct: 114 --------KGIKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGF 173

Query: 214 HSHCTSSWFLSHDCRCTVCRH 232
           H  C   W   H   C  CR+
Sbjct: 174 HVRCIDKWLQQH-LTCPKCRN 178
[Close]
BLAST of Spo25981.1 vs. TAIR (Arabidopsis)
Match: AT1G49200.1 (RING/U-box superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 5.500e-8
Identity = 41/138 (29.71%), Postives = 62/138 (44.93%), Query Frame = 1 

		  

Query: 94  LHGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTNPSN 153
           L G+  ++   LI G+   + L ++IR  F++T  S   +  +  L     S N      
Sbjct: 55  LSGNVLMLLSVLICGIICCLGLHYIIRCAFRRTS-SFMISEPIAGLSTPCGSSN------ 114

Query: 154 ETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSH 213
                + + +   R FPV +YS +       E+C+IC   FV GE++ +LP C H FH  
Sbjct: 115 -----KGINKKALRMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVR 174

Query: 214 CTSSWFLSHDCRCTVCRH 232
           C   W   H   C  CRH
Sbjct: 175 CIDKWLQQH-LTCPKCRH 179
[Close]
BLAST of Spo25981.1 vs. TAIR (Arabidopsis)
Match: AT5G05280.1 (RING/U-box superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 7.200e-8
Identity = 37/139 (26.62%), Postives = 62/139 (44.60%), Query Frame = 1 

		  

Query: 97  HEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTNPSNETY 156
           H  +I  +L+  +   + +  ++R   + T++ TP      N  P   + N         
Sbjct: 40  HMVIILAALLCALICALGINSVLRCVLRCTRRFTP------NEDPVDTNAN--------- 99

Query: 157 VLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHCTS 216
           V + + +   +  PVD+YS +        +C+IC   FV+GE + +LP C H FH  C  
Sbjct: 100 VAKGIKKRALKVIPVDSYSPEL--KMKATECLICLGDFVEGETVRVLPKCNHGFHVKCID 159

Query: 217 SWFLSHDCRCTVCRHDYFD 236
           +W LSH   C  CR    +
Sbjct: 160 TWLLSHS-SCPTCRQSLLE 160
The following BLAST results are available for this feature:
BLAST of Spo25981.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|950951178|ref|XP_014495591.1|8.8e-827.2PREDICTED: RING-H2 finger prot... [more]
gi|697181758|ref|XP_009599874.1|1.5e-734.4PREDICTED: RING-H2 finger prot... [more]
gi|901817015|gb|KMZ71056.1|1.5e-726.6hypothetical protein ZOSMA_189... [more]
gi|571446647|ref|XP_006577152.1|2.0e-725.0PREDICTED: RING-H2 finger prot... [more]
gi|657955790|ref|XP_008369369.1|2.0e-740.0PREDICTED: RING-H2 finger prot... [more]
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BLAST of Spo25981.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A162NG11_PHYB86.1e-838.0Uncharacterized protein OS=Phy... [more]
A0A0K9PQ07_ZOSMR1.0e-726.6Uncharacterized protein OS=Zos... [more]
I1JQN2_SOYBN1.4e-725.0Uncharacterized protein OS=Gly... [more]
A0A0J8CT32_BETVU1.4e-735.6Uncharacterized protein OS=Bet... [more]
M1A638_SOLTU3.0e-737.8Uncharacterized protein OS=Sol... [more]
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BLAST of Spo25981.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ATL76_ARATH4.0e-830.5E3 ubiquitin-protein ligase AT... [more]
ATL74_ARATH5.7e-736.2RING-H2 finger protein ATL74 O... [more]
ATL10_ARATH5.7e-729.0RING-H2 finger protein ATL10 O... [more]
ATL75_ARATH9.7e-729.7RING-H2 finger protein ATL75 O... [more]
ATL73_ARATH1.3e-626.6RING-H2 finger protein ATL73 O... [more]
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BLAST of Spo25981.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT1G49210.12.2e-930.5RING/U-box superfamily protein[more]
AT5G01880.13.2e-836.2RING/U-box superfamily protein[more]
AT1G49220.13.2e-829.0RING/U-box superfamily protein[more]
AT1G49200.15.5e-829.7RING/U-box superfamily protein[more]
AT5G05280.17.2e-826.6RING/U-box superfamily protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 186..230
score: 3.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 187..230
score: 9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 184..232
score: 3.0
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 186..235
score: 1.24

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding