Spo23314.1 (mRNA) | SpinachBase

Overview


Name	Spo23314.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr6 : 43522505 .. 43525541 (-)
Sequence length	751

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTCTAATTCTAGGGTTTATGTAATTGATTTATTGTGGGGTTTTTGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGAAAATGAAGCGAATTCTTGGAAATCAGAATTTATTTTGAGTGAATAATTAGTTAATTGTTCTATAGCGACGAGTTAATTTGGAAGTGTTTAGAAACACGTGATATATTATTATTATTTTTAGGCGCTATTGAAGTTTGATCATGTTTCTCTGTCTTTTGGGATCCACATGCTGACCTAATTTTTGGGTGTGGTTAAAATTGAAGTGATGTTGTTTTCTCATGTTTGAGTGGGGGCATATGTATTTTGTTTGTTTGTTTCCTTGTAAGTTCTTGATGAGTTGAGTAAGTTTAGGGGATCCTTTCTTCAAAAAAGTTACCAATAATTGATTGGGTTCACTCCAAATTGAGCTGTGGATTAATAGTATCAGGTTAGTAGAAATAAGGTATTGAGATTTGAGACAATAGAATTGGATGTTTAACAGCCAATTTACTCCCATTTTTCATTGATTTGTTTTCAGATTAGAAGCGGTAGACCTTGAATGCTCCCGTCCCTTTCCCAATTGTATTTCCAGTGAATTCGTTTATGTTTTCTTGATTGGATGACTTGGTTTCTTGTTGAATTCAATTTTGATGAAGAAGAAAAATATTTACCACTGCAAAAATTTGGGTGTACAGTTTACTAGTTTACTTATTGATTGTCTGGGTTTAGTAATTAGTAGTGGAGGAAATCGAGGAATGATGAATCAGCTTTTACGAATGTTAAATGAATAAATGATATTTGCAATGAATTTTGGTCTAATGTTAGTAAAGAAGTTAAATAAGATAGCTGCAAACTCGTAATTTTTACTAAAATTTCTCTTTAGAGTAGATAATGTTGTCAACTACCATTAGTATGTGCTACTTCCTTTGATGAGTGTGAGTTTTGTCTCTATATATTGTTTGTGCTATTTTGTCTTTGCCCTTTATTAGTTACAGAGTGGGCGCAATGTATGGGCCTTTTGACAAATGTATTTGTGGTTCCAGAATATGATCTGAGGTGGTTAAGAGTTGGGCGGTTATTTGGTGACTATATATGCATGTGTATATATGTTTCAAAAGAACACATAAAAGGCGTATTCAACCATTTGTATTGATTGCTTGAGTTTGTAATGTCAGCTTGTGCGGGTTCTTGAACATTCGTGTATTTTGCAGGTCTATTCTAGTGTTTGTGAAGACAACTAATTGATTTATCATTAACAGGTACTTGAAATTAAGGTCTTTTACTTAGATAATATCTATGCTTGGCAATAATGGTATGAGTGTCGGTCTTAACCTTGGGATTTTACTTTTGTTTGTATTATTTGTGGTGATTTTAAGTTGGCAGAAACAACTTTAAACTGTTGCAGTGTGAGTTTGTGCAGCTACTTTGATTATTGAATTGGTTTTTCTTTTTTTCCCCCAAGGAGTTCATTCAAACATAAAATTTGGTCTTGATTTATTTTATTTATAATAAAAACATGGTTATCTCTGGCTGTTTTCTTGTTTAGTTACATTATAATTTTGTGGGTATTATGATTTTGGTGTTTGAGCTTGCTTGGCATGAATGATCCATTTTGATTGTCTTAATTGGAACAAAATCAGTCTCAGATACATCTTAATTATACATTCAAGCTTGAAAGATACTCTTTTCTGGTTCTCGATTATTGAAGAACAATGAACTTTCTGACCAACTTATATTATACAATTTCAAACACATGTGAGAGATACTTAGTGATGTATATGCATACACTCTAAGGTTCTCTTGTCGATCTCAGTTAAGTGATTGATCTATTAACCTTTAAGTTTTGATTTAGCCCTGATCTTGTACTTACTTTTTACCTGTAAAACAAAAACCTCATTTTGTGATCCTTTGTCAGTCGTTGAACAAGTTTTTTGCAAAGTGTGTATCAGTTATGTTACCTATGATTCTTTGGATTCCCTATAGTTTGAACTTTGAAATCAGTTTCTTGCTACTTTGATGTGATCAAAACTCAGTCATCATCCGTGTTACTTCCATTATTTCCGTTATGTACTTCATGAAATGTATGTAGAGATTCTTAGATCATAGATGCTGATGCAATAATAACGTGTAGAAAATCTTCAGTCTGTATGAAATTTCTCGCCTGAGAAATGGTTTGTCTTCCTCCCTATAACCTAATGAACTCTTTTCATGGATATTTCTGCTTTTGTGCGTTGGATCTCTTAAACATTTGATTAATCATCTTGTCTAATACTATTTCTCTGTTTTGTTTAGGAAGATAAACAGACTGTGTATGGCTGAAATCTCATCACTTGACAAGAAGGTTTCTTTAGATCTGGCCAGGGAATTGCTCATTGCAATTTCCGAGTCTCTACCAGAAAATCTTCTCAATCCCGAGTCTCTACCGGATAAAAGTCTCAGTCCCAAGTCTATCGAGGAACCTACAAATGATCATGAGATTGCTTCAATGAAAAGTGCTGATAAAGACGAAGAGCTTAGGTCGGAACTGATCTCGATCTCGTATCTACCGTCACCGGACAAAGTTTCACTTCCAGCAAATGGTCATCTGTGAATGATATTGACATGATGTGAATCATATCTTGTAGAAAAAAATCTCCTTTTAAAGTTTATTATGTACTTAGTACTACTACCTAAGCACTCTTTGACCAAGTCTTGGAAGTGACATCAATATTAGACATGTAAATTGGGTGTAATTGCGTGGTTTTGGATGGTTTGTGTGATATGATAAGATTGTTACAGGAAAATATGCTATGATTTTGCTTCTCATTTGGTGTTCTTTGTAAATGTGCAACTGGTAAAGTACCAAGTTTTTGGAAAATATTTACTTTCTAGTTTCTACCAGGAAATATAGCCCTAATCTTGCTCTTAGGGCCAGGGCCAGG

mRNA sequence

ATGATTTCTAATTCTAGGGTTTATGTAATTGATTTATTGTGGGAGTGGGCGCAATGTATGGGCCTTTTGACAAATGTATTTGTGGTTCCAGAATATGATCTGAGGTGGTTAAGAGTTGGGCGGAAGATAAACAGACTGTGTATGGCTGAAATCTCATCACTTGACAAGAAGGTTTCTTTAGATCTGGCCAGGGAATTGCTCATTGCAATTTCCGAGTCTCTACCAGAAAATCTTCTCAATCCCGAGTCTCTACCGGATAAAAGTCTCAGTCCCAAGTCTATCGAGGAACCTACAAATGATCATGAGATTGCTTCAATGAAAAGTGCTGATAAAGACGAAGAGCTTAGGTCGGAACTGATCTCGATCTCGTATCTACCGTCACCGGACAAAGTTTCACTTCCAGCAAATGGTCATCTGTGAATGATATTGACATGATGTGAATCATATCTTGTAGAAAAAAATCTCCTTTTAAAGTTTATTATGTACTTAGTACTACTACCTAAGCACTCTTTGACCAAGTCTTGGAAGTGACATCAATATTAGACATGTAAATTGGGTGTAATTGCGTGGTTTTGGATGGTTTGTGTGATATGATAAGATTGTTACAGGAAAATATGCTATGATTTTGCTTCTCATTTGGTGTTCTTTGTAAATGTGCAACTGGTAAAGTACCAAGTTTTTGGAAAATATTTACTTTCTAGTTTCTACCAGGAAATATAGCCCTAATCTTGCTCTTAGGGCCAGGGCCAGG

Coding sequence (CDS)

ATGATTTCTAATTCTAGGGTTTATGTAATTGATTTATTGTGGGAGTGGGCGCAATGTATGGGCCTTTTGACAAATGTATTTGTGGTTCCAGAATATGATCTGAGGTGGTTAAGAGTTGGGCGGAAGATAAACAGACTGTGTATGGCTGAAATCTCATCACTTGACAAGAAGGTTTCTTTAGATCTGGCCAGGGAATTGCTCATTGCAATTTCCGAGTCTCTACCAGAAAATCTTCTCAATCCCGAGTCTCTACCGGATAAAAGTCTCAGTCCCAAGTCTATCGAGGAACCTACAAATGATCATGAGATTGCTTCAATGAAAAGTGCTGATAAAGACGAAGAGCTTAGGTCGGAACTGATCTCGATCTCGTATCTACCGTCACCGGACAAAGTTTCACTTCCAGCAAATGGTCATCTGTGA

Protein sequence

MISNSRVYVIDLLWEWAQCMGLLTNVFVVPEYDLRWLRVGRKINRLCMAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMKSADKDEELRSELISISYLPSPDKVSLPANGHL

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo23314	Spo23314	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo23314.1	Spo23314.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23314.1.CDS.3	Spo23314.1.CDS.3	CDS
Spo23314.1.CDS.2	Spo23314.1.CDS.2	CDS
Spo23314.1.CDS.1	Spo23314.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23314.1.utr3p.1	Spo23314.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23314.1.exon.3	Spo23314.1.exon.3	exon
Spo23314.1.exon.2	Spo23314.1.exon.2	exon
Spo23314.1.exon.1	Spo23314.1.exon.1	exon

Homology

[Close]

BLAST of Spo23314.1 vs. NCBI nr
Match: gi|902227339|gb|KNA20649.1| (hypothetical protein SOVF_050460 [Spinacia oleracea])

HSP 1 Score: 171.8 bits (434), Expect = 8.500e-40
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1

		  
Query: 48  MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK 107
           MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK
Sbjct: 1   MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK 60

Query: 108 SADKDEELRSELISISYLPSPDKVSLPANGHL 140
           SADKDEELRSELISISYLPSPDKVSLPANGHL
Sbjct: 61  SADKDEELRSELISISYLPSPDKVSLPANGHL 92

[Close]

BLAST of Spo23314.1 vs. NCBI nr
Match: gi|870860339|gb|KMT11692.1| (hypothetical protein BVRB_5g106290 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 98.6 bits (244), Expect = 9.100e-18
Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 1

		  
Query: 48  MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK 107
           MAE SSL KKVSLDLARELLIAISESLPEN+++ E          + EE TN H  AS+ 
Sbjct: 1   MAENSSLGKKVSLDLARELLIAISESLPENIISSE----------TGEEHTNGHHSASVT 60

Query: 108 SADKDEELRSELISISYLPSPDKVSLPANGH 139
           SADK ++LRSELISISY+P PDK++LPANGH
Sbjct: 61  SADKIDKLRSELISISYVP-PDKIALPANGH 80

[Close]

BLAST of Spo23314.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RP36_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_050460 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.900e-40
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1

		  
Query: 48  MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK 107
           MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK
Sbjct: 1   MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK 60

Query: 108 SADKDEELRSELISISYLPSPDKVSLPANGHL 140
           SADKDEELRSELISISYLPSPDKVSLPANGHL
Sbjct: 61  SADKDEELRSELISISYLPSPDKVSLPANGHL 92

[Close]

BLAST of Spo23314.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CDP5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g106290 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.400e-18
Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 1

		  
Query: 48  MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK 107
           MAE SSL KKVSLDLARELLIAISESLPEN+++ E          + EE TN H  AS+ 
Sbjct: 1   MAENSSLGKKVSLDLARELLIAISESLPENIISSE----------TGEEHTNGHHSASVT 60

Query: 108 SADKDEELRSELISISYLPSPDKVSLPANGH 139
           SADK ++LRSELISISY+P PDK++LPANGH
Sbjct: 61  SADKIDKLRSELISISYVP-PDKIALPANGH 80

The following BLAST results are available for this feature:

BLAST of Spo23314.1 vs. NCBI nr
BLAST of Spo23314.1 vs. UniProtKB/TrEMBL
BLAST of Spo23314.1 vs. ExPASy Swiss-Prot
BLAST of Spo23314.1 vs. TAIR (Arabidopsis)

BLAST of Spo23314.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902227339\|gb\|KNA20649.1\|	8.5e-40	100.	hypothetical protein SOVF_0504...	[more]
gi\|870860339\|gb\|KMT11692.1\|	9.1e-18	65.9	hypothetical protein BVRB_5g10...	[more]

BLAST of Spo23314.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RP36_SPIOL	5.9e-40	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CDP5_BETVU	6.4e-18	65.9	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo23314.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo23314.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35282	FAMILY NOT NAMED	coord: 39..135 score: 1.3
None	No IPR available	PANTHER	PTHR35282:SF2	F5D14.24 PROTEIN	coord: 39..135 score: 1.3