Spo13900.1 (mRNA) | SpinachBase

Overview


Name	Spo13900.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	DNA-directed RNA polymerase (2.7.7.6)
Location	SpoScf_00215 : 230078 .. 233887 (-)
Sequence length	2337

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTAGTCTTGCTTGGGGTTTCGATTTGGGGGTTTTCTTGGTATAAGCTTATTCAAATTTCTCTCTTCATGTTCCGAAATTTTGGTTATTTTCCATGATTTACAAGGTTAGATATTAGGTTTTCTAAATTATTTTCTGATTTAGGTTTTGATTTTAATTTAATAATTAGCAATAATATGATCGAGTTTTAGTTTTCTTGGGTTGAGAATTTTAGTGAGATGCTTTTGCGACAATAATATGATTTTAATTTTTGTAATTAGCAATAAGATGATCGAGTTTTTTTATTGTATATTTGAATCTATTTTCTTCAATATCTATTGCTCGGTGGTAGTGTTTGTTCATGTTAAATTTGTGGTCTTATTGCTTGATTCGTTCTCTGTTTCTTTTTGCATTAAGTTTTTAGTTTAATAATACTTTTATTATCTTATGATTTCGAATTCAGAAGAAACCTCATGTCATTTGTTTAAATTGTTGGGTTTTGTTTTTTGGTTGATCTAAAATGAGGTTTCCTGTTGGTTGATCTATTAGTGTAGTGGACTAGTTATATTGCTGACCGTGAANTCTATTAGTGTAGTGGACTAGTTATATTGCTGACCGTGAATAAGTTGAGGACTTGCTGGTACTTGACATTATTTTCACAGTTAACATGGGTGCTGCTGGATATAGTTTATAGTTTTAGAAGGATAAGGAGAATTATCTACTCTGCCATATATTTAATTATACATTTTTACTAGTTATGCCATACAAGTAACAGTAGGAATATCAACGAGTTATGAATATACCATTCAGTGCCATTTGGAATTTCAAGTTTTGATAATGAGACTATGGTTATCAATTTTGATCTCCATTTATATTGTTTTGATCATCGGGATATGATTAGCAAGTTTCCAGCTAAGAGTACTCTAAGTTGTTAGCTAACTCATATTTTGAGATTAAATAGGAACCAATTGGCAGATAAATGGATCACGATAAGAAATAATACAGGAGTTCTTGGTGTTGAAAATTGCTATGAAAGTGGAATCAGTTCCGCAATGGGAGTAGTTAGGCTGTCATGGTCGAAGGTTTTTTAAAAAGTAGATCATACGATAAATAAGTGTCTGCTTGGCTGTAGTGGTGAATGAAATATGGACATTAATTGAGAAAGGATGAGTTCTTGAATCTCTCTGTTGCTTCTAATGTGCATCTGTGTATGTCTTTTGTACTGCTTTTGTTCTGCACTATACTTCTCTTCTGTTTTGCTCTGCTCGGATACTGTTTCTGTACTGCTTTATACTGCTGCTGTAGTTGACTAGTTGCTGCTGCAGTTGGCTTTGTATTGCTGCTGTTGTGGCTGCTCCAGTTGGCTCGAATCAGCAATAACATGATAAAAGTATAGCTTAAGGTCTCATATAATACAACCAGCACTATATCATGATGTAAGAACAACTAAACAAATCCAGTTATTGTTTACCCCCCCCAACTAAACAACTAAACTAAATTATCACCTCAGTTGATCAACCTTCTGAAAATGTCATTAATGGCGAGCTGGTAGATAGCCATAAACTGAAAAGAAAATCAAAACCAGTTATTGTTTACCGCCCCCCCCCCCTCCCCCCCCGCTCTTTCTTCTTTTCTTGGGTGTACTTTTGTTGTTCTTCCATTGCTCTCTCAGTTTTATAAGGGGGAATGTGGTTTATTATAAAGCAATGTCAATAGCGTTATTAGGGTGAATGTGGTTTCTTATACAGAAATCGCATAGCTTTATCAGGAGAAATGTGGTTTCTTATAAAGCAATGGTACTCCAATTCTTTCTACTTTTTATGCTTTTCGCTTTTTAACCTTCTAGGAGAGCTTTTTGTTGTACATTTTGGGCTTTCCAGTCTTTCTTTCTTCCCCCTTCTCCAGCAGACTTGTTATCCTCTGGTGAGTGCAATTAACATGATTTTTGCTGCATGCAAAGTTTTCTTTATATCGAACTGCTGATTTGAAGCATTTGTATATTAATAGTCGTAGGATAGTTTAGGAGCTCCATTCATTTGTTGGACACAATCTGGCAAGACATGACCGACACCGATTTAGAAAGAACAAAGCATATCATGGCGGATATGATCTGCCCTGTTCTGTTGGACACAATCATTAAAGGTTCTTCTTTACTTAAGTTCTCCCTTGAAATTTATTTGATCTACTCAGTTTGTAGAAGTTTTAAGCATTTGTTTAGTGACGTTCTTTGATTTCTTGCTGTATGAATTTATGTGAAATTTTTTATTCTTTGATTTGTTTGATCTACTCAATTGAAATGTTCTGTCTCCACAGTCAATTTCCTTCTCTGTAGTTGAGTTCATTTCTGTTTCAAAGTAAGATAGCTAAAGTATGCACCAATTGAAATGCCTTTTATGTTCACTTGTCTTGAGGTCAATCTTCATCATATAAACAATGTTTCTTAGTAAAACGGTAAGTTGTGCTGCACATAGTAATTTGTGTAGGTGATGGTAGTTAGTATATTGCTCAAGACTGGGCCATTTAGTTCCTTCTGAAGATAGATATTGTTGCAATGAGGAGATAAGTATCTGCTTTAACAGTGTTGCATTTTCGGAGTTTCAGTTACAATTTTGTGGAAAATATATTACTCTTATTAGAGTTATTCCCTCTTTCCCGTCATATTGATAACATTTTGTAAGTACCAAAAAAAGGGAAATATGGATTGATTTCTGTCTACTATTAACTGTATTGACGTATAATGTATTCACATGTTCATGCAGTTTTGAGTTTTTAACTATATTTTAAAATAGTTAAAAGTAGAAATTACTAACTTATGGGGTAGACTGGCAGAAGGGTTAGAAACTACGTATTTGTTGCCTCTTTATACCGCAAAATGTGTCGGGTTATTGTTTTTGTATAGCGTAGGCAGTAAACATGGGATAACACTAACAGCGCTATTTTTACTGATTGTAAGTGCAATATAGGTTTGAAATGGAGCATAATATAGGTTTGAAATGGAGCTCCTTTTTGCAGTATCAAAGGTGGAATTCTTGTCCAATCCTTGTGTAGTTTATTTTCTGTCATACTAATGAGATTTTCCAAAAGAATTTTAATAGATTGTTAATTGTTTAACATGAATTGGGATACTGCTTCTATACCGAGTGAGGCTGGTATAAATCTATAGTTGTTCTTTCTCTCAACTTTTTCTCCGGCAGATAGGTTAAATTTGGTACACTTTGAAATTTTGTCATTATCTTACAGGCAATCCTCGAATTTCTACCGTCAATATTATCTGGATTAATCCAGTCACAACAACTTGGGTGCAAAGTCCTTGTAGCAGTACAAAGGGTGTAGCAGTACAAAGGGTGTAGCAGTACAAAGGGTGAATTAGCTGTGGAAGTAGCTCTGGAGAAGGAAGCAGTCAGGCTAACTGGTGATGCATGGAGGATTATCCTAGATTGTTGTCTGCTTGTTTTCCACCTGATTGATACTAGGCGCTCTATTCCATATGCAATAAAACAAATCCAAGACCTTTTTGGAATATCATGTGCCTTTGATCAAGCAGTGCAGGTATGGTTAAACTGCCTGTATTTCTATATTAATAGCACGCTGTTAATATTTTTTCGTTGCATTATATGATAAGGATTGCAACTTGTGAAGGGATTTTAGAAGTTTTCTTTTGTGAAGTAGATACTCAGTTGTTTTTATTATATTTGGTCTTTGATGCATTGAAGTTAAGAGGTTTTGAGATTCCAGTTAAGAGGTTTCTGCAAAAGCCAATAAGACAGAAAAGTCAAATACATTGTGTATGACGTTATCAATTTGTCATATTTACAGCTTTGCAAAGCCAA

mRNA sequence

TTTCTAGTCTTGCTTGGGGTTTCGATTTGGGGGTTTTCTTGGTATAAGCTTATTCAAATTTCTCTCTTCATGTTCCGAAATTTTGGTTATTTTCCATGATTTACAAGGTTAGATATTAGGTTTTCTAAATTATTTTCTGATTTAGGTTTTGATTTTAATTTAATAATTAGCAATAATATGATCGAGTTTTAGTTTTCTTGGGTTGAGAATTTTAGTGAGATGCTTTTGCGACAATAATATGATTTTAATTTTTGTAATTAGCAATAAGATGATCGAGTTTTTTTATTGTATATTTGAATCTATTTTCTTCAATATCTATTGCTCGGTGGTAGTGTTTGTTCATGTTAAATTTGTGGTCTTATTGCTTGATTCGTTCTCTGTTTCTTTTTGCATTAAGTTTTTAGTTTAATAATACTTTTATTATCTTATGATTTCGAATTCAGAAGAAACCTCATGTCATTTGTTTAAATTGTTGGGTTTTGTTTTTTGGTTGATCTAAAATGAGGTTTCCTGTTGGTTGATCTATTAGTGTAGTGGACTAGTTATATTGCTGACCGTGAANTCTATTAGTGTAGTGGACTAGTTATATTGCTGACCGTGAATAAGTTGAGGACTTGCTGGTACTTGACATTATTTTCACAGTTAACATGGGTGCTGCTGGATATAGTTTATAGTTTTAGAAGGATAAGGAGAATTATCTACTCTGCCATATATTTAATTATACATTTTTACTAGTTATGCCATACAAGTAACAGTAGGAATATCAACGAGTTATGAATATACCATTCAGTGCCATTTGGAATTTCAAGTTTTGATAATGAGACTATGGTTATCAATTTTGATCTCCATTTATATTGTTTTGATCATCGGGATATGATTAGCAAGTTTCCAGCTAAGAGTACTCTAAGTTGTTAGCTAACTCATATTTTGAGATTAAATAGGAACCAATTGGCAGATAAATGGATCACGATAAGAAATAATACAGGAGTTCTTGGTGTTGAAAATTGCTATGAAAGTGGAATCAGTTCCGCAATGGGAGTAGTTAGGCTGTCATGGTCGAAGGTTTTTTAAAAAGTAGATCATACGATAAATAAGTGTCTGCTTGGCTGTAGTGGTGAATGAAATATGGACATTAATTGAGAAAGGATGAGTTCTTGAATCTCTCTGTTGCTTCTAATGTGCATCTGTGTATGTCTTTTGTACTGCTTTTGTTCTGCACTATACTTCTCTTCTGTTTTGCTCTGCTCGGATACTGTTTCTGTACTGCTTTATACTGCTGCTGTAGTTGACTAGTTGCTGCTGCAGTTGGCTTTGTATTGCTGCTGTTGTGGCTGCTCCAGTTGGCTCGAATCAGCAATAACATGATAAAAGTATAGCTTAAGGTCTCATATAATACAACCAGCACTATATCATGATGTAAGAACAACTAAACAAATCCAGTTATTGTTTACCCCCCCCAACTAAACAACTAAACTAAATTATCACCTCAGTTGATCAACCTTCTGAAAATGTCATTAATGGCGAGCTGGTAGATAGCCATAAACTGAAAAGAAAATCAAAACCAGTTATTGTTTACCGCCCCCCCCCCCTCCCCCCCCGCTCTTTCTTCTTTTCTTGGGTGTACTTTTGTTGTTCTTCCATTGCTCTCTCAGTTTTATAAGGGGGAATGTGGTTTATTATAAAGCAATGTCAATAGCGTTATTAGGGTGAATGTGGTTTCTTATACAGAAATCGCATAGCTTTATCAGGAGAAATGTGGTTTCTTATAAAGCAATGGTACTCCAATTCTTTCTACTTTTTATGCTTTTCGCTTTTTAACCTTCTAGGAGAGCTTTTTGTTGTACATTTTGGGCTTTCCAGTCTTTCTTTCTTCCCCCTTCTCCAGCAGACTTGTTATCCTCTGTCGTAGGATAGTTTAGGAGCTCCATTCATTTGTTGGACACAATCTGGCAAGACATGACCGACACCGATTTAGAAAGAACAAAGCATATCATGGCGGATATGATCTGCCCTGTTCTGTTGGACACAATCATTAAAGGCAATCCTCGAATTTCTACCGTCAATATTATCTGGATTAATCCAGTCACAACAACTTGGGTGCAAAGTCCTTGTAGCAGTACAAAGGGTGTAGCAGTACAAAGGGTGCGCTCTATTCCATATGCAATAAAACAAATCCAAGACCTTTTTGGAATATCATGTGCCTTTGATCAAGCAGTGCAGTTAAGAGGTTTTGAGATTCCAGTTAAGAGGTTTCTGCAAAAGCCAATAAGACAGAAAAGTCAAATACATTGTGTATGACGTTATCAATTTGTCATATTTACAGCTTTGCAAAGCCAA

Coding sequence (CDS)

ATGACCGACACCGATTTAGAAAGAACAAAGCATATCATGGCGGATATGATCTGCCCTGTTCTGTTGGACACAATCATTAAAGGCAATCCTCGAATTTCTACCGTCAATATTATCTGGATTAATCCAGTCACAACAACTTGGGTGCAAAGTCCTTGTAGCAGTACAAAGGGTGTAGCAGTACAAAGGGTGCGCTCTATTCCATATGCAATAAAACAAATCCAAGACCTTTTTGGAATATCATGTGCCTTTGATCAAGCAGTGCAGTTAAGAGGTTTTGAGATTCCAGTTAAGAGGTTTCTGCAAAAGCCAATAAGACAGAAAAGTCAAATACATTGTGTATGA

Protein sequence

MTDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKGVAVQRVRSIPYAIKQIQDLFGISCAFDQAVQLRGFEIPVKRFLQKPIRQKSQIHCV

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo13900	Spo13900	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo13900.1	Spo13900.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13900.1.utr5p.2	Spo13900.1.utr5p.2	five_prime_UTR
Spo13900.1.utr5p.1	Spo13900.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13900.1.CDS.4	Spo13900.1.CDS.4	CDS
Spo13900.1.CDS.3	Spo13900.1.CDS.3	CDS
Spo13900.1.CDS.2	Spo13900.1.CDS.2	CDS
Spo13900.1.CDS.1	Spo13900.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13900.1.utr3p.1	Spo13900.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13900.1.exon.5	Spo13900.1.exon.5	exon
Spo13900.1.exon.4	Spo13900.1.exon.4	exon
Spo13900.1.exon.3	Spo13900.1.exon.3	exon
Spo13900.1.exon.2	Spo13900.1.exon.2	exon
Spo13900.1.exon.1	Spo13900.1.exon.1	exon

Homology

[Close]

BLAST of Spo13900.1 vs. NCBI nr
Match: gi|902203993|gb|KNA14744.1| (hypothetical protein SOVF_104130 [Spinacia oleracea])

HSP 1 Score: 149.8 bits (377), Expect = 2.800e-33
Identity = 82/119 (68.91%), Postives = 86/119 (72.27%), Query Frame = 1

		  
Query: 1    MTDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKG--- 60
            MTDTDLERTKHIMADMICPVLLDTIIKG+PRISTVNIIWINP TTTWVQSPCSSTKG   
Sbjct: 1023 MTDTDLERTKHIMADMICPVLLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSSTKGELA 1082

Query: 61   --VAVQRV--------------------------RSIPYAIKQIQDLFGISCAFDQAVQ 89
              VA+++                           RSIPYAIKQIQDLFGISCAFDQAVQ
Sbjct: 1083 VEVALEKEAVRLTGDAWRIVLDCCLPVFHLIDTRRSIPYAIKQIQDLFGISCAFDQAVQ 1141

[Close]

BLAST of Spo13900.1 vs. NCBI nr
Match: gi|59939212|gb|AAX12374.1| (DNA-directed RNA polymerase alpha subunit [Spinacia oleracea])

HSP 1 Score: 149.8 bits (377), Expect = 2.800e-33
Identity = 82/119 (68.91%), Postives = 86/119 (72.27%), Query Frame = 1

		  
Query: 1   MTDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKG--- 60
           MTDTDLERTKHIMADMICPVLLDTIIKG+PRISTVNIIWINP TTTWVQSPCSSTKG   
Sbjct: 813 MTDTDLERTKHIMADMICPVLLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSSTKGELA 872

Query: 61  --VAVQRV--------------------------RSIPYAIKQIQDLFGISCAFDQAVQ 89
             VA+++                           RSIPYAIKQIQDLFGISCAFDQAVQ
Sbjct: 873 VEVALEKEAVRLTGDAWRIVLDCCLPVFHLIDTRRSIPYAIKQIQDLFGISCAFDQAVQ 931

[Close]

BLAST of Spo13900.1 vs. NCBI nr
Match: gi|870866088|gb|KMT17107.1| (hypothetical protein BVRB_2g041610 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 139.4 bits (350), Expect = 3.800e-30
Identity = 74/119 (62.18%), Postives = 80/119 (67.23%), Query Frame = 1

		  
Query: 1    MTDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKGVAV 60
            + D+DLERTKHIMAD+ICP+LLDTIIKG+PRISTVNIIWINP TTTWVQSPCS+ KG   
Sbjct: 899  LADSDLERTKHIMADVICPILLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSNRKGELA 958

Query: 61   QRV-------------------------------RSIPYAIKQIQDLFGISCAFDQAVQ 89
              V                               RSIPYAIKQIQDLFGISCAFDQAVQ
Sbjct: 959  VEVTLEKEAVRQSGDAWRIVLDCCLPVFHLIDSQRSIPYAIKQIQDLFGISCAFDQAVQ 1017

[Close]

BLAST of Spo13900.1 vs. NCBI nr
Match: gi|731319831|ref|XP_010670484.1| (PREDICTED: DNA-directed RNA polymerase V subunit 1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 139.4 bits (350), Expect = 3.800e-30
Identity = 74/119 (62.18%), Postives = 80/119 (67.23%), Query Frame = 1

		  
Query: 1    MTDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKGVAV 60
            + D+DLERTKHIMAD+ICP+LLDTIIKG+PRISTVNIIWINP TTTWVQSPCS+ KG   
Sbjct: 1015 LADSDLERTKHIMADVICPILLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSNRKGELA 1074

Query: 61   QRV-------------------------------RSIPYAIKQIQDLFGISCAFDQAVQ 89
              V                               RSIPYAIKQIQDLFGISCAFDQAVQ
Sbjct: 1075 VEVTLEKEAVRQSGDAWRIVLDCCLPVFHLIDSQRSIPYAIKQIQDLFGISCAFDQAVQ 1133

[Close]

BLAST of Spo13900.1 vs. NCBI nr
Match: gi|697097805|ref|XP_009623505.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase V subunit 1 [Nicotiana tomentosiformis])

HSP 1 Score: 105.9 bits (263), Expect = 4.600e-20
Identity = 53/118 (44.92%), Postives = 70/118 (59.32%), Query Frame = 1

		  
Query: 2    TDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKGV--- 61
            +D  LER  HI+ADMICP+LLDT+IKG+PR+S+ NI+WI+P T TW+++P  S  G    
Sbjct: 1017 SDDHLERVSHILADMICPILLDTVIKGDPRVSSANIVWISPDTMTWIRNPSKSQSGELAL 1076

Query: 62   ----------------------------AVQRVRSIPYAIKQIQDLFGISCAFDQAVQ 89
                                         +   RSIPYAIKQ+Q+L GISCAF+QAV+
Sbjct: 1077 DIVLEKEAVKQRGDAWRILMDSCLPFIHLIDTRRSIPYAIKQVQELIGISCAFEQAVK 1134

[Close]

BLAST of Spo13900.1 vs. UniProtKB/TrEMBL
Match: Q5D868_SPIOL (DNA-directed RNA polymerase subunit (Fragment) OS=Spinacia oleracea GN=NRPD1b PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.000e-33
Identity = 82/119 (68.91%), Postives = 86/119 (72.27%), Query Frame = 1

		  
Query: 1   MTDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKG--- 60
           MTDTDLERTKHIMADMICPVLLDTIIKG+PRISTVNIIWINP TTTWVQSPCSSTKG   
Sbjct: 813 MTDTDLERTKHIMADMICPVLLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSSTKGELA 872

Query: 61  --VAVQRV--------------------------RSIPYAIKQIQDLFGISCAFDQAVQ 89
             VA+++                           RSIPYAIKQIQDLFGISCAFDQAVQ
Sbjct: 873 VEVALEKEAVRLTGDAWRIVLDCCLPVFHLIDTRRSIPYAIKQIQDLFGISCAFDQAVQ 931

[Close]

BLAST of Spo13900.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R704_SPIOL (DNA-directed RNA polymerase subunit OS=Spinacia oleracea GN=SOVF_104130 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.000e-33
Identity = 82/119 (68.91%), Postives = 86/119 (72.27%), Query Frame = 1

		  
Query: 1    MTDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKG--- 60
            MTDTDLERTKHIMADMICPVLLDTIIKG+PRISTVNIIWINP TTTWVQSPCSSTKG   
Sbjct: 1023 MTDTDLERTKHIMADMICPVLLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSSTKGELA 1082

Query: 61   --VAVQRV--------------------------RSIPYAIKQIQDLFGISCAFDQAVQ 89
              VA+++                           RSIPYAIKQIQDLFGISCAFDQAVQ
Sbjct: 1083 VEVALEKEAVRLTGDAWRIVLDCCLPVFHLIDTRRSIPYAIKQIQDLFGISCAFDQAVQ 1141

[Close]

BLAST of Spo13900.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CU22_BETVU (DNA-directed RNA polymerase subunit OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g041610 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.600e-30
Identity = 74/119 (62.18%), Postives = 80/119 (67.23%), Query Frame = 1

		  
Query: 1    MTDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKGVAV 60
            + D+DLERTKHIMAD+ICP+LLDTIIKG+PRISTVNIIWINP TTTWVQSPCS+ KG   
Sbjct: 899  LADSDLERTKHIMADVICPILLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSNRKGELA 958

Query: 61   QRV-------------------------------RSIPYAIKQIQDLFGISCAFDQAVQ 89
              V                               RSIPYAIKQIQDLFGISCAFDQAVQ
Sbjct: 959  VEVTLEKEAVRQSGDAWRIVLDCCLPVFHLIDSQRSIPYAIKQIQDLFGISCAFDQAVQ 1017

[Close]

BLAST of Spo13900.1 vs. UniProtKB/TrEMBL
Match: K4B027_SOLLC (DNA-directed RNA polymerase subunit OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.500e-20
Identity = 55/118 (46.61%), Postives = 71/118 (60.17%), Query Frame = 1

		  
Query: 2    TDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKG---- 61
            +D  LER  HI+ADMICP+LLDT+IKG+PR+S+ NI WI+P T +W++SP  S +G    
Sbjct: 1062 SDDHLERVSHILADMICPILLDTVIKGDPRVSSANIAWISPDTMSWIRSPSKSQRGELAL 1121

Query: 62   -------VAVQR--------------------VRSIPYAIKQIQDLFGISCAFDQAVQ 89
                      QR                     RSIPYAIKQ+Q+L GISCAF+QAV+
Sbjct: 1122 DIVLEKEAVKQRGDAWRILMDSCLPVIHLIDTTRSIPYAIKQVQELIGISCAFEQAVK 1179

[Close]

BLAST of Spo13900.1 vs. UniProtKB/TrEMBL
Match: M5XPM8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024567mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.100e-19
Identity = 54/105 (51.43%), Postives = 66/105 (62.86%), Query Frame = 1

		  
Query: 3   DTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKGV---- 62
           D +   T    AD+ICPVLL+TIIKG+PRI + NIIWI+P TTTW++SP  S K +    
Sbjct: 50  DLETTTTLQYYADLICPVLLETIIKGDPRIGSANIIWIDPDTTTWIRSPNKSHKVIKQSG 109

Query: 63  ---------------AVQRVRSIPYAIKQIQDLFGISCAFDQAVQ 89
                           +   RSIPYAIKQIQ+L G+SCAFDQAVQ
Sbjct: 110 DAWRTVLDSCLPVLHLIDTRRSIPYAIKQIQELLGVSCAFDQAVQ 154

[Close]

BLAST of Spo13900.1 vs. ExPASy Swiss-Prot
Match: NRPE1_ARATH (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.000e-14
Identity = 45/118 (38.14%), Postives = 65/118 (55.08%), Query Frame = 1

		  
Query: 2    TDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKGVAVQ 61
            TD DLERT  ++ + + PVLL+ +IKG+ RI + NIIW +   TTW+++  +S +G  V 
Sbjct: 1013 TDPDLERTLDVLCNTVYPVLLEIVIKGDSRICSANIIWNSSDMTTWIRNRHASRRGEWVL 1072

Query: 62   RV-------------------------------RSIPYAIKQIQDLFGISCAFDQAVQ 89
             V                               RSIPY++KQ+Q+L G+SCAF+QAVQ
Sbjct: 1073 DVTVEKSAVKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSVKQVQELLGLSCAFEQAVQ 1130

[Close]

BLAST of Spo13900.1 vs. TAIR (Arabidopsis)
Match: AT2G40030.1 (nuclear RNA polymerase D1B)

HSP 1 Score: 80.9 bits (198), Expect = 5.600e-16
Identity = 45/118 (38.14%), Postives = 65/118 (55.08%), Query Frame = 1

		  
Query: 2    TDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKGVAVQ 61
            TD DLERT  ++ + + PVLL+ +IKG+ RI + NIIW +   TTW+++  +S +G  V 
Sbjct: 1013 TDPDLERTLDVLCNTVYPVLLEIVIKGDSRICSANIIWNSSDMTTWIRNRHASRRGEWVL 1072

Query: 62   RV-------------------------------RSIPYAIKQIQDLFGISCAFDQAVQ 89
             V                               RSIPY++KQ+Q+L G+SCAF+QAVQ
Sbjct: 1073 DVTVEKSAVKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSVKQVQELLGLSCAFEQAVQ 1130

The following BLAST results are available for this feature:

BLAST of Spo13900.1 vs. NCBI nr
BLAST of Spo13900.1 vs. UniProtKB/TrEMBL
BLAST of Spo13900.1 vs. ExPASy Swiss-Prot
BLAST of Spo13900.1 vs. TAIR (Arabidopsis)

BLAST of Spo13900.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902203993\|gb\|KNA14744.1\|	2.8e-33	68.9	hypothetical protein SOVF_1041...	[more]
gi\|59939212\|gb\|AAX12374.1\|	2.8e-33	68.9	DNA-directed RNA polymerase al...	[more]
gi\|870866088\|gb\|KMT17107.1\|	3.8e-30	62.1	hypothetical protein BVRB_2g04...	[more]
gi\|731319831\|ref\|XP_010670484.1\|	3.8e-30	62.1	PREDICTED: DNA-directed RNA po...	[more]
gi\|697097805\|ref\|XP_009623505.1\|	4.6e-20	44.9	PREDICTED: LOW QUALITY PROTEIN...	[more]

BLAST of Spo13900.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

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Match Name	E-value	Identity	Description
Q5D868_SPIOL	2.0e-33	68.9	DNA-directed RNA polymerase su...	[more]
A0A0K9R704_SPIOL	2.0e-33	68.9	DNA-directed RNA polymerase su...	[more]
A0A0J8CU22_BETVU	2.6e-30	62.1	DNA-directed RNA polymerase su...	[more]
K4B027_SOLLC	5.5e-20	46.6	DNA-directed RNA polymerase su...	[more]
M5XPM8_PRUPE	2.1e-19	51.4	Uncharacterized protein OS=Pru...	[more]

BLAST of Spo13900.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1

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Match Name	E-value	Identity	Description
NRPE1_ARATH	1.0e-14	38.1	DNA-directed RNA polymerase V ...	[more]

BLAST of Spo13900.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

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Match Name	E-value	Identity	Description
AT2G40030.1	5.6e-16	38.1	nuclear RNA polymerase D1B	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 5..88 score: 6.8
None	No IPR available	PANTHER	PTHR19376:SF36	DNA-DIRECTED RNA POLYMERASE V SUBUNIT 1	coord: 5..88 score: 6.8

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0071704	organic substance metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0016779	nucleotidyltransferase activity