Spo13899.1 (mRNA) | SpinachBase

Overview


Name	Spo13899.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_00215 : 580651 .. 584150 (+)
Sequence length	1070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAATACGGCATACTCGTTGTAGAACATGGAATCAGAAGTCAGAGCCTAATTTTCTTTTCCCCTTCGTTCTACCAACGAAAACCAACCCCTACTCCCCCATTTTAGATCTGCGAATTCGATCAGTCCCAAACTTTGCAATCCTTTGTTCTCAATCAAAACCCCTAACTTATTTTCCATAATCATCCTCAATATCACCAATTTCTGCTGCTCGCCGAAATTGAATGAAAACCCCTAATTTTCGAAAATTTCAATGGTTGAGTTTCAATAACGTAAATTTCGACATTAAAATCTGTATGATCCATGGAGGTTTTGTACGGAGAGTCCAGTCGCTGAGCTCAAATAACATATCTAACATACAAAGGATGAATCGCAAGCTCAAAGTTAAGTTGAAGAAAATTTTCGATTATTTTTCATCTGGGTGAATTAGGGTTTTTAATTCGATTCAATACATCTAGGATGGTATCTGAAATTGCTTGAATTTATTCTTGTTTCCATTGATAGAAATGTTGAGTTTACCTCTAGATCTGAGAGGAAGGAGGCGGCCCTTGCTACTTTTTAGAAAAACGAGTCGTATTGCTTATAAGGTTTGGCGGTACGCTTCCTTTCATTTTCTTCTTCCTTTGGAGCTTTGAATCAAGAGATTTTTGTAATTCTTTCGGTTCTTTTGTTTGTTCCTCGTAATTGAGTTGTTTATTGTTAGTGTTGAGTTAGGGTTTATGGTTTTAAAATTAACAAAATTTAAGCATAATTCTGGCATTCTAGGTAGTTGATGCATCAAATTGTGAAAACTGATTGTGCAAAATTCGTGGGAGATACTGATCAAAATAAATTGAGCTGAAAAAAAAACCCAAGTCTATACTTACGGTTTGATTAAAAAAAATTGGATTATTTCGGTAGAACAAAGGGGGACGAAATCGATGGATATGAGAGGTTGAATGATGCTTTTAAGATAAAAATCTATCAAAATTGGGCAGCTGAAATTTATCATAAACTAATTGTGAGTTAGGCGGCTAAATTTAGGCTGCTAAACATCTCAAGATGATAGAATCTATTGCACCTACGTTTTACCAAGGAGATAGTTGTCCTCTTAAGAATAAGGCAATCTTAATGCAGTAGTATATGAAGAGAGAGAAGCTGGTGTATTTGTGAGCCTAAGGTTGTGTTTTACACATTCTGAATAATAGTTTATGTAATTAGTACGTAGGAGAGGAAATGATGAGAGAAGTGACCACAGGTTCACTCTATTGAAGAATAATTGTCCATGAACTCTAGTAGATGATCACCTTGTTACTAAATCTTGAAGTTCTACTGAACAAAAACTTCCCAACTCATTATTGAACTTCTATCAGCTGCGCTGGCGTATTTGATAATTTTGTGACCACAGGTTCAGTCTATTGAAGAATAATTGTCCATGAACTCTACCTTGTTACTAAATCTTGAAGTTATACTGAACAAAAACTTCCCAACTCATTATTGAACTTCTATCAGCTGCGCTGGCGTATTTGATAATTTTGTGTTACAATGCCGTGCTTTTACAAATTTTTATCAAAGTCTGGTACCCAACTCATTTTGTGTTACTCACTGACCTATAATGATTAAACGTTTGAAAAAATAAATCAATCAAAATTTAGTTAACAGTTGGTTAACTCGCCGAAATTGGGAAGTGCGTGCCTAAGGGTGTAAAAAATAAAGTTAGTCCCCAAAAGGTGAAAAAGGCCAAATTTTAGTCCCTAAATGTTACCTTAACTCTTCCGTATCTTGTCTTATATTTTCAGATCATTACTGCACCTCTCTCACTTCTCTCTAGATGGAAGTCTTATACTTGTACATGTGTGTGGATTAATGTTTTCATTCCACTGTTAAATACAGGTGACTAGTTTAGGTGTTTGTAAATTTTTTATGCCTGAGAGCAGTTATGTATTACATCACCTAGGAGATGTTTTCAGAATGTTCTTTGAGTCAGGTAGATGCTTATAAGTTCAATCTTGTAATTTATTTTTATTGAACTTAGCTTCTTTTGTTCGGCCTGAAACTGACTTGACCAACTTTAACAATCCCAATCCAGATTATTGAACGCCATCAACCGATTGCCTTTGCTAGGAGTTAATTTCTTGTGGGATATCGGTTGCTCAAACCTAAAATTGATTGTTTGTGGTCTCGGTTGTATGACCTTTCTCACTCGTACATTAAGATGAAAACTAAACTATTTTTTTTTGAAGTTGTTGTATTCTTGAAATAATTAGTCATAGTATTTGCTGTTCTGGATAGTTTTAAACCTGCATTGACAATGATCCAGTGTTACTGGCTGGTTGTTGAACTAAAACGTAGAGGCATGACTTATTTTGAAACAAATTGACTATCTCTATTGATGGTGTGTCGTAATGAATGTTTCTTTGCAGATTAGTGTAATAGGCATGCCAATGTTGTGGTAAGATCTAATTTGGTCCTACATAGTTGATGTGAATTTTTCTGTTGTTCGGCCTTATCGTTCCAACAGTGGTATGTGGAGCTGTTATGTACAGGATCTTTACTGGTGCAATGTAGATTAATTTTCGTATAAGTTCACATGTTAAATTCAGGTGCTGATTGAAAGCATGGTAAATGACGTATTTATGTATTAAGATACAATAATCAAAGTCCAATATGGATGGAAATATCCCAACTCCTATAGTTTAAAGAAAATTTGCATAATATTCAATTGGTTTTAGATTGTCTTTGCACATCTCTTTTTGCTTAGTCATTCTGCTTCTTGATTTTTCTATATACCAGACTGGAGGTAGTCAAGCTAGTTTGTCTTTGAGAGGGCGCGACACTTTTGGTCGTCAAGGTAGAGGAAAAGCTAGTCGGTCATTGAATTTCGGGATGATGATCGATCTTTCAGTTCTACCAAGGCACACAAAAGTGATTGCAAGGTGTTGCTAAGAAGGCTGCTAATTAAATACGGTAATTTGTCCTAAATTGTAAGACTTATTTATTCATCTGTTGTGTTGGTTAAGATTTATTACATTATGTGTAAATTTGGTTGAATTATTCAATAGTTAGTCTATGCAGGAGTGTGGATGATTGCTGCTTCGGGCTAGTGTGTAATTCCCCATCCGTAAAGATTGACGGTTAACATTGTCCATTTGTAAAATTTACGGTTACTTCATAATATACGGAGTCACTTTTTAATGTTTCTATATAGGTTGAAACGAGATTTTATTCTTGTACTTGCACAATTTTGTACTTTTAGACGTAAAATTTTGATCATGAATGAATAATTTGTAATTATTTGTACAAAATATTTTGGAGGTAATATTTGTTTATTTTCCGATTGGTGCTTTGTTGAAATTTAACCAATATTAATAAGCAGTAATTTTTTTTTAATCAAAAATCATCAAAGAGACCTGTTAGGTTAGATATTGGGTCTGTACCATTTATTTTTAAATAGTATTATGGCAAAGACACCCGTTAGGTGAAATAGGGGTCTGAGGTTGCGGGGAAAAAAAAATATCAAAG

mRNA sequence

ATTAATACGGCATACTCGTTGTAGAACATGGAATCAGAAGTCAGAGCCTAATTTTCTTTTCCCCTTCGTTCTACCAACGAAAACCAACCCCTACTCCCCCATTTTAGATCTGCGAATTCGATCAGTCCCAAACTTTGCAATCCTTTGTTCTCAATCAAAACCCCTAACTTATTTTCCATAATCATCCTCAATATCACCAATTTCTGCTGCTCGCCGAAATTGAATGAAAACCCCTAATTTTCGAAAATTTCAATGGTTGAGTTTCAATAACGTAAATTTCGACATTAAAATCTGTATGATCCATGGAGGTTTTGTACGGAGAGTCCAGTCGCTGAGCTCAAATAACATATCTAACATACAAAGGATGAATCGCAAGCTCAAAAAATGTTGAGTTTACCTCTAGATCTGAGAGGAAGGAGGCGGCCCTTGCTACTTTTTAGAAAAACGAGTCGTATTGCTTATAAGACTGGAGGTAGTCAAGCTAGTTTGTCTTTGAGAGGGCGCGACACTTTTGGTCGTCAAGGTAGAGGAAAAGCTAGTCGGTCATTGAATTTCGGGATGATGATCGATCTTTCAGTTCTACCAAGGCACACAAAAGTGATTGCAAGGTTTAGTCTATGCAGGAGTGTGGATGATTGCTGCTTCGGGCTAGTGTGTAATTCCCCATCCGTAAAGATTGACGGTTAACATTGTCCATTTGTAAAATTTACGGTTACTTCATAATATACGGAGTCACTTTTTAATGTTTCTATATAGGTTGAAACGAGATTTTATTCTTGTACTTGCACAATTTTGTACTTTTAGACGTAAAATTTTGATCATGAATGAATAATTTGTAATTATTTGTACAAAATATTTTGGAGGTAATATTTGTTTATTTTCCGATTGGTGCTTTGTTGAAATTTAACCAATATTAATAAGCAGTAATTTTTTTTTAATCAAAAATCATCAAAGAGACCTGTTAGGTTAGATATTGGGTCTGTACCATTTATTTTTAAATAGTATTATGGCAAAGACACCCGTTAGGTGAAATAGGGGTCTGAGGTTGCGGGGAAAAAAAAATATCAAAG

Coding sequence (CDS)

ATGTTGAGTTTACCTCTAGATCTGAGAGGAAGGAGGCGGCCCTTGCTACTTTTTAGAAAAACGAGTCGTATTGCTTATAAGACTGGAGGTAGTCAAGCTAGTTTGTCTTTGAGAGGGCGCGACACTTTTGGTCGTCAAGGTAGAGGAAAAGCTAGTCGGTCATTGAATTTCGGGATGATGATCGATCTTTCAGTTCTACCAAGGCACACAAAAGTGATTGCAAGGTTTAGTCTATGCAGGAGTGTGGATGATTGCTGCTTCGGGCTAGTGTGTAATTCCCCATCCGTAAAGATTGACGGTTAA

Protein sequence

MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMMIDLSVLPRHTKVIARFSLCRSVDDCCFGLVCNSPSVKIDG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo13899	Spo13899	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo13899.1	Spo13899.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13899.1.exon.1	Spo13899.1.exon.1	exon
Spo13899.1.exon.2	Spo13899.1.exon.2	exon
Spo13899.1.exon.3	Spo13899.1.exon.3	exon
Spo13899.1.exon.4	Spo13899.1.exon.4	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13899.1.utr5p.1	Spo13899.1.utr5p.1	five_prime_UTR
Spo13899.1.utr5p.2	Spo13899.1.utr5p.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13899.1.CDS.1	Spo13899.1.CDS.1	CDS
Spo13899.1.CDS.2	Spo13899.1.CDS.2	CDS
Spo13899.1.CDS.3	Spo13899.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13899.1.utr3p.1	Spo13899.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo13899.1 vs. NCBI nr
Match: gi|902146053|gb|KNA05026.1| (hypothetical protein SOVF_194220 [Spinacia oleracea])

HSP 1 Score: 145.2 bits (365), Expect = 6.100e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

		  
Query: 1  MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMM 60
          MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMM
Sbjct: 1  MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMM 60

Query: 61 IDLSVLPRHTKVIAR 76
          IDLSVLPRHTKVIAR
Sbjct: 61 IDLSVLPRHTKVIAR 75

[Close]

BLAST of Spo13899.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEQ4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_194220 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.300e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

		  
Query: 1  MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMM 60
          MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMM
Sbjct: 1  MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMM 60

Query: 61 IDLSVLPRHTKVIAR 76
          IDLSVLPRHTKVIAR
Sbjct: 61 IDLSVLPRHTKVIAR 75

The following BLAST results are available for this feature:

BLAST of Spo13899.1 vs. NCBI nr
BLAST of Spo13899.1 vs. UniProtKB/TrEMBL
BLAST of Spo13899.1 vs. ExPASy Swiss-Prot
BLAST of Spo13899.1 vs. TAIR (Arabidopsis)

BLAST of Spo13899.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902146053\|gb\|KNA05026.1\|	6.1e-32	100.	hypothetical protein SOVF_1942...	[more]

BLAST of Spo13899.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QEQ4_SPIOL	4.3e-32	100.	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo13899.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo13899.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description