Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTAATAAGCAATAAGAACATTCCAATACGCTCTAACAAACGGCTATCTAAACTTGACTTTTCCAATCTCTTTATTTTTAACTATAAATATGCCCATTTCCTCCACCCTCTACTACATCATCTATCCAATCTCTATCTATTTCCTCCCTAAAACATAACACCATGACTAATTCCTTGAACCCAATCTTCACTTTAGCCGCCGTCCTCGTCTTAGCCCTAGCTTGTGGTTCGAGTCGCGCACAAAACTGTGGTTGCGACTCGAACTTATGTTGTAGCCAATACGGCTACTGCGGCACCACATCTGACTACTGTGGTGTCGGGTGTCAACAAGGACCCTGCGATACACCCGTCGGGCCCACTCCTACGGGCCCGAGCGGGGTCTCGGTTCCCGATGTAGTGAGTGATGGTTTCTTTAATGGGATAATTGATCAAGCAGACTCTAGTTGTGCTGGTAGGAACAACTTTTATAGTAGGTCTGCCTTCTTGGATGCTCTTAACCATTATCCCGAGTTTGGGACTGTTGGTTCTGCTGATGATTCTAGGCGTGAAATTGCGGCTTTCTTTGCCCATGTTACTCATGAAACCGGACGTAAGTATTTATCATACTATACTATCACTTTTCTTACATTTTTGCATGTTAATTAATAATTATGTTAGCTAATTAACTCCTATATTGGTATATTATCGGTATGTATTTTCATAATATCAACTTTAAAAAAAAATCACATAACAAATTGGATATATTAGTGATTAAATATTAAATTGGAGCCCGTTCAAATAGTAACTATATATAAAGAATTTTAAGAAACGGACGTACGTGATCATATTCCCTCATTTTCAAAATAATAGTAACATACTGTCCTTTCTCATGGTTTCGGACCAACTCAGGCCTTTAATCATTAATATGTTGAAGAAAATAGTAAAAATTATTATAAAAAATGATATTCTAAAAATATTCAGACAAATCAATATATTAAGACATCGAATTATTATACGTTGAGCTTTTTTATATTTAAATTATGTATGGGAAATAGAATTTGGAACCATATGCCAATTAATTGAAAAACTATCGCTATTTTGTTTTAAATTAGTACGTAGATGCCAAACTACTTAGCCTTTACTCTTTAACTAACGCTTGCTAAACGAAAGAGAATAGAAAATCGTGTTTTCTTTGCGGCCCATAGATCATTGACTTAGTATTCTATCCACAAACACAATTGGTAAATGAAAAAAAGTTTCTAGGAAGACCACTATTTCAACTTGGTGTATAGGTGTGAAAAAAATTTATTTTTTTTCTGTTGTAACGGATGCAAAGAAAGAATAAAGAACGTAATAAAGAACGCAGAGAATTTAACGTGGTTCACTAACAATGTGTTAGCTACGTCCACAGGCAGAGGAGAGGAAAGCTTTATTGATCTTGAGGAGTACAGATTACAGAATACAACTAGGTTATGACCTAGAGAGTTTATATAGTACTCTCTAGATAGATGCGGAAAAGCCCAGAAAATAGGCCCAAAACAGATAACTCTAGTCCAGAATAACAGATACCGTAAAGTTCGGGGGCGTTGCCCCCGAACCCCCATCGGGGACCACGTTGCGTCCCCAAACCCCTAAACCAAGGGCGTCGCCCCTGGACCCCGACTCGCTGACCGGTCAGCGAGATCCCCGTGCTGGGGCGTTGCAGTAAGGGGCTTGACCGATTCAAGGCATTATCTAACATTTTCTGAATTATCTAAACGTGTCTAAACTTAATTAAATGTAACGTACTGTACTTATTTTGTCTGAAATAAGTCAAGTCAAACAGAGTTCAAACTGTATAAATTAATCAATATTTCATGGGTACGTACAGATTTTTGCTACATAGAGGAAATAAATGGAGCATCAGGGGACTACTGTGACGAAAACAACACACAATGGCCATGCAACCCTAACAAACAATACTTTGGAAGAGGACCAATTCAACTATCATGGAACTACAACTATGGACCAGCTGGCCAAAGCATTGGATTCGACGGTTTAAACGCGCCGGAAACCGTCGCCAGCGACCCCGTGATCGCATTCAGGACGGCGTTCTGGTTTTGGATGAACAATGTACACTCTAGGATAATTTCTGGACAAGGGTTTGGTTCAACCATTAGAGCTATTAATGGGATGGAATGTGATGGTGGTAACACTGCAACTGTTAATGCTCGTGTTGGTTACTACACTCAGTATTGTAGTCAACTTGGTGTTTCTCCCGGGGATAATCTTTCTTGCTAGTTAATTAGGCTCTGTTTGGTAACACGTACTGCAACTGTTAATGCAAAATAAATATGTATATTCAATCAAAAAAATAAAAAAGTAAATTTTATATAGGGCTCTTTTGCGGTTTATTTTTATTCCATGGCCATTGTTGTTAACCTTT TCTAATAAGCAATAAGAACATTCCAATACGCTCTAACAAACGGCTATCTAAACTTGACTTTTCCAATCTCTTTATTTTTAACTATAAATATGCCCATTTCCTCCACCCTCTACTACATCATCTATCCAATCTCTATCTATTTCCTCCCTAAAACATAACACCATGACTAATTCCTTGAACCCAATCTTCACTTTAGCCGCCGTCCTCGTCTTAGCCCTAGCTTGTGGTTCGAGTCGCGCACAAAACTGTGGTTGCGACTCGAACTTATGTTGTAGCCAATACGGCTACTGCGGCACCACATCTGACTACTGTGGTGTCGGGTGTCAACAAGGACCCTGCGATACACCCGTCGGGCCCACTCCTACGGGCCCGAGCGGGGTCTCGGTTCCCGATGTAGTGAGTGATGGTTTCTTTAATGGGATAATTGATCAAGCAGACTCTAGTTGTGCTGGTAGGAACAACTTTTATAGTAGGTCTGCCTTCTTGGATGCTCTTAACCATTATCCCGAGTTTGGGACTGTTGGTTCTGCTGATGATTCTAGGCGTGAAATTGCGGCTTTCTTTGCCCATGTTACTCATGAAACCGGACATTTTTGCTACATAGAGGAAATAAATGGAGCATCAGGGGACTACTGTGACGAAAACAACACACAATGGCCATGCAACCCTAACAAACAATACTTTGGAAGAGGACCAATTCAACTATCATGGAACTACAACTATGGACCAGCTGGCCAAAGCATTGGATTCGACGGTTTAAACGCGCCGGAAACCGTCGCCAGCGACCCCGTGATCGCATTCAGGACGGCGTTCTGGTTTTGGATGAACAATGTACACTCTAGGATAATTTCTGGACAAGGGTTTGGTTCAACCATTAGAGCTATTAATGGGATGGAATGTGATGGTGGTAACACTGCAACTGTTAATGCTCGTGTTGGTTACTACACTCAGTATTGTAGTCAACTTGGTGTTTCTCCCGGGGATAATCTTTCTTGCTAGTTAATTAGGCTCTGTTTGGTAACACGTACTGCAACTGTTAATGCAAAATAAATATGTATATTCAATCAAAAAAATAAAAAAGTAAATTTTATATAGGGCTCTTTTGCGGTTTATTTTTATTCCATGGCCATTGTTGTTAACCTTT ATGACTAATTCCTTGAACCCAATCTTCACTTTAGCCGCCGTCCTCGTCTTAGCCCTAGCTTGTGGTTCGAGTCGCGCACAAAACTGTGGTTGCGACTCGAACTTATGTTGTAGCCAATACGGCTACTGCGGCACCACATCTGACTACTGTGGTGTCGGGTGTCAACAAGGACCCTGCGATACACCCGTCGGGCCCACTCCTACGGGCCCGAGCGGGGTCTCGGTTCCCGATGTAGTGAGTGATGGTTTCTTTAATGGGATAATTGATCAAGCAGACTCTAGTTGTGCTGGTAGGAACAACTTTTATAGTAGGTCTGCCTTCTTGGATGCTCTTAACCATTATCCCGAGTTTGGGACTGTTGGTTCTGCTGATGATTCTAGGCGTGAAATTGCGGCTTTCTTTGCCCATGTTACTCATGAAACCGGACATTTTTGCTACATAGAGGAAATAAATGGAGCATCAGGGGACTACTGTGACGAAAACAACACACAATGGCCATGCAACCCTAACAAACAATACTTTGGAAGAGGACCAATTCAACTATCATGGAACTACAACTATGGACCAGCTGGCCAAAGCATTGGATTCGACGGTTTAAACGCGCCGGAAACCGTCGCCAGCGACCCCGTGATCGCATTCAGGACGGCGTTCTGGTTTTGGATGAACAATGTACACTCTAGGATAATTTCTGGACAAGGGTTTGGTTCAACCATTAGAGCTATTAATGGGATGGAATGTGATGGTGGTAACACTGCAACTGTTAATGCTCGTGTTGGTTACTACACTCAGTATTGTAGTCAACTTGGTGTTTCTCCCGGGGATAATCTTTCTTGCTAG MTNSLNPIFTLAAVLVLALACGSSRAQNCGCDSNLCCSQYGYCGTTSDYCGVGCQQGPCDTPVGPTPTGPSGVSVPDVVSDGFFNGIIDQADSSCAGRNNFYSRSAFLDALNHYPEFGTVGSADDSRREIAAFFAHVTHETGHFCYIEEINGASGDYCDENNTQWPCNPNKQYFGRGPIQLSWNYNYGPAGQSIGFDGLNAPETVASDPVIAFRTAFWFWMNNVHSRIISGQGFGSTIRAINGMECDGGNTATVNARVGYYTQYCSQLGVSPGDNLSC Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo13951.1 vs. NCBI nr
Match: gi|902229883|gb|KNA21640.1| (hypothetical protein SOVF_041480 [Spinacia oleracea]) HSP 1 Score: 476.5 bits (1225), Expect = 3.200e-131 Identity = 239/278 (85.97%), Postives = 241/278 (86.69%), Query Frame = 1
BLAST of Spo13951.1 vs. NCBI nr
Match: gi|731352259|ref|XP_010687451.1| (PREDICTED: chitinase 6-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 476.1 bits (1224), Expect = 4.200e-131 Identity = 220/269 (81.78%), Postives = 249/269 (92.57%), Query Frame = 1
BLAST of Spo13951.1 vs. NCBI nr
Match: gi|731352265|ref|XP_010687454.1| (PREDICTED: endochitinase A-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 414.5 bits (1064), Expect = 1.500e-112 Identity = 202/281 (71.89%), Postives = 236/281 (83.99%), Query Frame = 1
BLAST of Spo13951.1 vs. NCBI nr
Match: gi|225434052|ref|XP_002274620.1| (PREDICTED: chitinase 5 [Vitis vinifera]) HSP 1 Score: 410.2 bits (1053), Expect = 2.800e-111 Identity = 191/272 (70.22%), Postives = 226/272 (83.09%), Query Frame = 1
BLAST of Spo13951.1 vs. NCBI nr
Match: gi|731352251|ref|XP_010687448.1| (PREDICTED: chitinase 4-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 409.5 bits (1051), Expect = 4.800e-111 Identity = 196/279 (70.25%), Postives = 228/279 (81.72%), Query Frame = 1
BLAST of Spo13951.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQ45_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_041480 PE=3 SV=1) HSP 1 Score: 476.5 bits (1225), Expect = 2.200e-131 Identity = 239/278 (85.97%), Postives = 241/278 (86.69%), Query Frame = 1
BLAST of Spo13951.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BUJ6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g189980 PE=3 SV=1) HSP 1 Score: 476.1 bits (1224), Expect = 2.900e-131 Identity = 220/269 (81.78%), Postives = 249/269 (92.57%), Query Frame = 1
BLAST of Spo13951.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BQB7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g190040 PE=3 SV=1) HSP 1 Score: 414.5 bits (1064), Expect = 1.000e-112 Identity = 202/281 (71.89%), Postives = 236/281 (83.99%), Query Frame = 1
BLAST of Spo13951.1 vs. UniProtKB/TrEMBL
Match: F6HAV9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g00240 PE=3 SV=1) HSP 1 Score: 410.2 bits (1053), Expect = 2.000e-111 Identity = 191/272 (70.22%), Postives = 226/272 (83.09%), Query Frame = 1
BLAST of Spo13951.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BUJ1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g189930 PE=3 SV=1) HSP 1 Score: 409.5 bits (1051), Expect = 3.400e-111 Identity = 196/279 (70.25%), Postives = 228/279 (81.72%), Query Frame = 1
BLAST of Spo13951.1 vs. ExPASy Swiss-Prot
Match: CHI5_ARATH (Endochitinase EP3 OS=Arabidopsis thaliana GN=EP3 PE=1 SV=1) HSP 1 Score: 394.4 bits (1012), Expect = 1.000e-108 Identity = 191/272 (70.22%), Postives = 218/272 (80.15%), Query Frame = 1
BLAST of Spo13951.1 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1) HSP 1 Score: 354.4 bits (908), Expect = 1.200e-96 Identity = 175/291 (60.14%), Postives = 205/291 (70.45%), Query Frame = 1
BLAST of Spo13951.1 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1) HSP 1 Score: 352.4 bits (903), Expect = 4.400e-96 Identity = 171/275 (62.18%), Postives = 202/275 (73.45%), Query Frame = 1
BLAST of Spo13951.1 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2) HSP 1 Score: 345.5 bits (885), Expect = 5.400e-94 Identity = 163/262 (62.21%), Postives = 193/262 (73.66%), Query Frame = 1
BLAST of Spo13951.1 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1) HSP 1 Score: 342.8 bits (878), Expect = 3.500e-93 Identity = 157/272 (57.72%), Postives = 194/272 (71.32%), Query Frame = 1
BLAST of Spo13951.1 vs. TAIR (Arabidopsis)
Match: AT3G54420.1 (homolog of carrot EP3-3 chitinase) HSP 1 Score: 394.4 bits (1012), Expect = 5.700e-110 Identity = 191/272 (70.22%), Postives = 218/272 (80.15%), Query Frame = 1
BLAST of Spo13951.1 vs. TAIR (Arabidopsis)
Match: AT2G43590.1 (Chitinase family protein) HSP 1 Score: 332.4 bits (851), Expect = 2.700e-91 Identity = 161/274 (58.76%), Postives = 194/274 (70.80%), Query Frame = 1
BLAST of Spo13951.1 vs. TAIR (Arabidopsis)
Match: AT2G43580.1 (Chitinase family protein) HSP 1 Score: 313.5 bits (802), Expect = 1.300e-85 Identity = 153/275 (55.64%), Postives = 193/275 (70.18%), Query Frame = 1
BLAST of Spo13951.1 vs. TAIR (Arabidopsis)
Match: AT2G43570.1 (chitinase, putative) HSP 1 Score: 268.5 bits (685), Expect = 4.700e-72 Identity = 137/276 (49.64%), Postives = 177/276 (64.13%), Query Frame = 1
BLAST of Spo13951.1 vs. TAIR (Arabidopsis)
Match: AT2G43610.1 (Chitinase family protein) HSP 1 Score: 256.1 bits (653), Expect = 2.400e-68 Identity = 131/278 (47.12%), Postives = 174/278 (62.59%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo13951.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo13951.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo13951.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo13951.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|