Spo17119 (gene)

Overview
NameSpo17119
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 8601632 .. 8602120 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAGCTCAACCCTAAAAAGAAAGGGGATTCAACTCCAAGCAATGAGCAAAGTAGTATGGAAAAAACTCACAAAGAGCACCAAACTATTACACAAATTCATCACCCACAAATCAAAGAAACTTATTGTGATAAATATTAAGCCAAAGACTAAGATTAGGATGATGAACAACAATATCACTACTCCTCTATACTTATCTCCAAGGCGAACCGCCTTGAAAAGGAAGAAGTTGTACAAAAAATACAAGTTTCCTCCTCCAAAATCACCTATTTATATAGATAATCTCTTCAAAAACACTTCTTATTCTTCAAGTTCATCATCATCATCAAAGTTAACTATGCGAATTCGAGACAAGATTGAGCATGATCATGAGAATGTTAATAATGGAAATGGTTTGAGGGAATCAACGTTGGGGATTGATGAGAGAGCTGATGTTTTCATTGCTAGTTTTCGAGCTCAGTTAGATAATAGTTTTAGGAAGTGGTAG

mRNA sequence

ATGTCTAGCTCAACCCTAAAAAGAAAGGGGATTCAACTCCAAGCAATGAGCAAAGTAGTATGGAAAAAACTCACAAAGAGCACCAAACTATTACACAAATTCATCACCCACAAATCAAAGAAACTTATTGTGATAAATATTAAGCCAAAGACTAAGATTAGGATGATGAACAACAATATCACTACTCCTCTATACTTATCTCCAAGGCGAACCGCCTTGAAAAGGAAGAAGTTGTACAAAAAATACAAGTTTCCTCCTCCAAAATCACCTATTTATATAGATAATCTCTTCAAAAACACTTCTTATTCTTCAAGTTCATCATCATCATCAAAGTTAACTATGCGAATTCGAGACAAGATTGAGCATGATCATGAGAATGTTAATAATGGAAATGGTTTGAGGGAATCAACGTTGGGGATTGATGAGAGAGCTGATGTTTTCATTGCTAGTTTTCGAGCTCAGTTAGATAATAGTTTTAGGAAGTGGTAG

Coding sequence (CDS)

ATGTCTAGCTCAACCCTAAAAAGAAAGGGGATTCAACTCCAAGCAATGAGCAAAGTAGTATGGAAAAAACTCACAAAGAGCACCAAACTATTACACAAATTCATCACCCACAAATCAAAGAAACTTATTGTGATAAATATTAAGCCAAAGACTAAGATTAGGATGATGAACAACAATATCACTACTCCTCTATACTTATCTCCAAGGCGAACCGCCTTGAAAAGGAAGAAGTTGTACAAAAAATACAAGTTTCCTCCTCCAAAATCACCTATTTATATAGATAATCTCTTCAAAAACACTTCTTATTCTTCAAGTTCATCATCATCATCAAAGTTAACTATGCGAATTCGAGACAAGATTGAGCATGATCATGAGAATGTTAATAATGGAAATGGTTTGAGGGAATCAACGTTGGGGATTGATGAGAGAGCTGATGTTTTCATTGCTAGTTTTCGAGCTCAGTTAGATAATAGTTTTAGGAAGTGGTAG

Protein sequence

MSSSTLKRKGIQLQAMSKVVWKKLTKSTKLLHKFITHKSKKLIVINIKPKTKIRMMNNNITTPLYLSPRRTALKRKKLYKKYKFPPPKSPIYIDNLFKNTSYSSSSSSSSKLTMRIRDKIEHDHENVNNGNGLRESTLGIDERADVFIASFRAQLDNSFRKW
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo17119.1Spo17119.1mRNA


Homology
[Close]
BLAST of Spo17119.1 vs. NCBI nr
Match: gi|902228731|gb|KNA21248.1| (hypothetical protein SOVF_045240 [Spinacia oleracea])

HSP 1 Score: 310.1 bits (793), Expect = 2.300e-81
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 

		  

Query: 1   MSSSTLKRKGIQLQAMSKVVWKKLTKSTKLLHKFITHKSKKLIVINIKPKTKIRMMNNNI 60
           MSSSTLKRKGIQLQAMSKVVWKKLTKSTKLLHKFITHKSKKLIVINIKPKTKIRMMNNNI
Sbjct: 1   MSSSTLKRKGIQLQAMSKVVWKKLTKSTKLLHKFITHKSKKLIVINIKPKTKIRMMNNNI 60

Query: 61  TTPLYLSPRRTALKRKKLYKKYKFPPPKSPIYIDNLFKNTSYSSSSSSSSKLTMRIRDKI 120
           TTPLYLSPRRTALKRKKLYKKYKFPPPKSPIYIDNLFKNTSYSSSSSSSSKLTMRIRDKI
Sbjct: 61  TTPLYLSPRRTALKRKKLYKKYKFPPPKSPIYIDNLFKNTSYSSSSSSSSKLTMRIRDKI 120

Query: 121 EHDHENVNNGNGLRESTLGIDERADVFIASFRAQLDNSFRKW 163
           EHDHENVNNGNGLRESTLGIDERADVFIASFRAQLDNSFRKW
Sbjct: 121 EHDHENVNNGNGLRESTLGIDERADVFIASFRAQLDNSFRKW 162
[Close]
BLAST of Spo17119.1 vs. NCBI nr
Match: gi|870858386|gb|KMT09895.1| (hypothetical protein BVRB_5g121140 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 68.6 bits (166), Expect = 1.200e-8
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 1 

		  

Query: 89  SPIYIDNLFKNTSYSSSSSSSSKLTMRIRDKIEHDHENVNNGNGLREST--LGIDERADV 148
           SPIY+DNLF  +   S S  +SKL M+     E +HE+++  + +  +T  LGIDERA++
Sbjct: 2   SPIYVDNLFMTSCNPSCSKCTSKLIMQSG---ERNHEDIHGDSSVESTTSVLGIDERAEL 61

Query: 149 FIASFRAQLDNSFRKW 163
           FI+SFRA+LD S RKW
Sbjct: 62  FISSFRAELDRSLRKW 74
[Close]
BLAST of Spo17119.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RP41_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_045240 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.600e-81
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 

		  

Query: 1   MSSSTLKRKGIQLQAMSKVVWKKLTKSTKLLHKFITHKSKKLIVINIKPKTKIRMMNNNI 60
           MSSSTLKRKGIQLQAMSKVVWKKLTKSTKLLHKFITHKSKKLIVINIKPKTKIRMMNNNI
Sbjct: 1   MSSSTLKRKGIQLQAMSKVVWKKLTKSTKLLHKFITHKSKKLIVINIKPKTKIRMMNNNI 60

Query: 61  TTPLYLSPRRTALKRKKLYKKYKFPPPKSPIYIDNLFKNTSYSSSSSSSSKLTMRIRDKI 120
           TTPLYLSPRRTALKRKKLYKKYKFPPPKSPIYIDNLFKNTSYSSSSSSSSKLTMRIRDKI
Sbjct: 61  TTPLYLSPRRTALKRKKLYKKYKFPPPKSPIYIDNLFKNTSYSSSSSSSSKLTMRIRDKI 120

Query: 121 EHDHENVNNGNGLRESTLGIDERADVFIASFRAQLDNSFRKW 163
           EHDHENVNNGNGLRESTLGIDERADVFIASFRAQLDNSFRKW
Sbjct: 121 EHDHENVNNGNGLRESTLGIDERADVFIASFRAQLDNSFRKW 162
[Close]
BLAST of Spo17119.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C869_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g121140 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.200e-9
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 1 

		  

Query: 89  SPIYIDNLFKNTSYSSSSSSSSKLTMRIRDKIEHDHENVNNGNGLREST--LGIDERADV 148
           SPIY+DNLF  +   S S  +SKL M+     E +HE+++  + +  +T  LGIDERA++
Sbjct: 2   SPIYVDNLFMTSCNPSCSKCTSKLIMQSG---ERNHEDIHGDSSVESTTSVLGIDERAEL 61

Query: 149 FIASFRAQLDNSFRKW 163
           FI+SFRA+LD S RKW
Sbjct: 62  FISSFRAELDRSLRKW 74
The following BLAST results are available for this feature:
BLAST of Spo17119.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902228731|gb|KNA21248.1|2.3e-81100.hypothetical protein SOVF_0452... [more]
gi|870858386|gb|KMT09895.1|1.2e-848.6hypothetical protein BVRB_5g12... [more]
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BLAST of Spo17119.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RP41_SPIOL1.6e-81100.Uncharacterized protein OS=Spi... [more]
A0A0J8C869_BETVU8.2e-948.6Uncharacterized protein OS=Bet... [more]
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BLAST of Spo17119.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo17119.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo257380.69Barchart | Table