Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGGAATGTTCTCAAGAGTATTCAACTACCCTATGTTCTTTGCTGAGTAGCATGTGTGCATCATACTCTCGCATGTAAAATCAAAAGCCACGGGTCAAATTTCGATTAGTAAGGGTTCAAATGTATTACTCTCTCCATCCCAGATTAGTTTACACTTTCTTTTTTCGTCTGTCCCCAGATTAATTGTTATACTTCTAAATTAGAAATGACCCCGTAATTATTATGTTGTCTCTCTTCTCACTAATTTTTTTACAGTTTTCATACCCCTCTCATTCAATTTTAAAAAAATACCTCACTAACTCGTATTACATCTACTTTTTCAATAAAATAGCAATTGATAATCGAATAATCTTATCACCTAAAACTTTGTGTAAATAGTAATTTAGTTGCTTGTGATGATAAATTGTTCATTTTACTTTCGAATTCTTATACTCAAACCAGAAACTATATGTCCTATTGAGGGTGGGAGATTCGAATCTGATATTTATCGTACACTGACCTTAGTCTTAACCACTAAGCCAATACAGTACATCATTAGTAACTTGTTGAGTCTAATGTTAAACATATCAAATTTGTCGCCATTACTACGCACGGGAAGTGATAAATCCAAGGAAAATTTTACTTTTTCCAAGGAAATTCACATTTTTTTAAAGTTGATTTCCTTGGAATAAGTGAAATTTTTCCTTGGATTTATCATTTCCCGTTACGCACCCTAATTGCGATTACAGGATAGCACATTGCCACTTTCCCATCTCCCAAAATTCCACAAAATCTCTCTTCTCAAACCCATTAACACTATTTTCTCTCTCCTCATTCATCACCTTCGATTAAACCTCCCATTTGATCTCCCTTATGTCAAATTGACTCTTCAAATCAACAAACTCAGTCAATACCAACATTGAACTCGTCTTCCTCCATTCGTCGCTCAGCCATTGACCCAACTCGGGCTTCGAGGTGAATCACCTTCCACTCACTCCTTTGTGTATGCTTAACTCTTTGATATTTACTTCATTATCCCCAATTTAATATCCTGATTAGTTGCTTAATTTATAGACATTATTATTGGATTAATTGGGTTTGATTCGATTGGTTATTGATTAATTTTAGAAATTCGATTGAATACTCTTAAAATGTTAGTGCTGAACTTATGATGCAACATGTTAAATTCGTGAGTAGTGTAGCATTTGAATCTTCAAGTTTAGCTTAATTTTTTTTGATATTTCTAGGATCATCAATACCTTCAGTTTTTCAATTTTCTTATTTTAGATTGTTGTCAATTTTAGTATCCAAATCGGTATCTGAATTCCTGAAGAATTAAGAGTTGGGCAATACTGCATAAGTGAAGATCAGGAAAAGTTGACAGAGAAAGGTTAGTCTGTTTGTTATTGGCAGTGATGTTGTTACAGCACTATAATTCAATCTAAATTCGAATCAATATCTTTCGTGTTGCAATCAATTCTGACCTTTTACTTCCTTAAACATGAATTTTCTTCTTGATTGAGCTATTGATTGGGTTGAATGAACTCTTATTGTGGCGAATTCGTATTCTGGCATTGTGTGGTAATTTAAATCCATGTAGACATTCTTTGTTTAGGAGACGTTATTGACTAATTACAACGTCATATATGCTAACCTAATATAGGAGATTACAAAATTTATACAAGAATAATTACATATATTCTACTCCGGAGTATCACTTACGTTGATCATCCTGTTTAGTGTAAGGGAATTATAGGTACTATTGGTATAATAATGCAGGTGCGCGAAGTATATGAATATCGGAAAAGTTCCACTTTGATCATATGTGTAGGTTGTGTTAAGGTTGTTTGAATGTTTGACTGTTGTAGTAAAAGTTGGATGCAGTAATGAAAGAAGGGGGAAATTGAGGGTCAAAGTTGTAGTTTTTACGGAGTATAAACAAATGTTTGCACAATAGTGTTATTGGGATATTATTTCAACAAGAAAGTTAATTGAACTTGTCATCAATACCCATCAAACTGACGAAGGTGAACTGAAGTTCGAGCTAGCTCATACTTAAAAAAGTGAATCCCTGTCAATGGAATGGAGAGACAAGTCAATTTGATTTTTTGAATCTTCCGTAAGACCCCGTGAAAAGGGGGGGAAATGATTAACCTCCACCTAGCTAGAGACCTAGATGACATGGATATAGTGTGGATAGAATATATTCCAAGAAAACCTAATCAACCAAGTAAGCATGATTTTCCTCAAAAGACCATCTGGAAAAAAAGAGGCATCATTTTTCAAAACATGACACTTGACAAGAACAATTGTCATGATTTTTGAATGCCTTTTCAGGGTTTTGCTTGAAATGTACTTTTTATGACTTTGTCTGACTTTCTTTATTCTATGAATATGGTGCTAAGTGCTAACCTAATTCTGTAATCATCAATCTGTTCTTGTTAATGACTGTTCCCCATGTTAAGAAGTTCATATTATTATGATATATTGCAGAACTCAAATATTTGGTTTGATGGGGAACAAAGAAAACCAGAACATGTTAACAAGTAACTTGGGCAATATTGCACGGAGATTATTATTCGGTATTCTTTCTATGGGACCAATCCCTGATCATATAGCTTTCATTATGGATGGAAACCGAAGATATTCCAAGAAAAACAAATTAGAGGAAGGAACAGGCCATAACTTAGGGTTTACTGCTCTAACATCCATGCTTAAGTACTGCTATGAACTCGAGGTAAAATACATAACTGTATACGCCTTTAGTATTGATAATTTCAAAAGACGGCCTGAAGAAGTTAAGTCTTTAATGGAGCTTATACGGGAGAAAATAGAAAGCTTGATTAAAGAGGATAGTATTGTTAACCAACATGGAGTTAGAGTTTACTTTGTTGGGGACTTAAAGTTACTAGATGACTCAGTAAGGTTAGCTGCTGAAAAGGCTATGGAAGTTACTGCTGGTAACTCCAAAGCCGTGCTGTCAATTTGTATTGCGTACACTTCTACGAATGAGATTGTGAATGCTGTTGAACAATCTTGTGTAGAAAAATGGGATGAACTTAATAGTTTAACCAAAAAGTCGATAAGTGTGATGGATGTTGAGAAGCATATGTATATGAGAGTTGCTCCGAATCCTGATATAGTGGTAAGGACTTCTGGTGAAAACCGCTTGAGTAATTTTCTTCTGTGGCAGAGTGCAAACTCTATTCTGTATAACCCCACCGCGCTTTGGCCTGAGATTGGTCTTCGGCATTTAGTTTGGGCTGTGCTGAACTTCCAAAGAAATCAAGCTTGTTTGGAAACGAAAAAGAAGCAACAACGCTGATGTTACGATGTACGGAGTAGTTGATGTGATGATAAGATTAGGAGTTAATTTTGTGAACTACATGAAGATAATTTCTTGTATACAAATTAGTTTGCAAATCATAATTTTGTAGGTTATATAGAATCATTATTACTGCATTTCTCCTGTTTACGAGTCTGGTAAAAACATGTCAAGGAAGCTTTATGTACCTTCTCTTTACCACAAAGCA ATGGAGGGAATGTTCTCAAGATCAATACCAACATTGAACTCGTCTTCCTCCATTCGTCGCTCAGCCATTGACCCAACTCGGGCTTCGAGATCAGGAAAAGTTGACAGAGAAAGAACTCAAATATTTGGTTTGATGGGGAACAAAGAAAACCAGAACATGTTAACAAGTAACTTGGGCAATATTGCACGGAGATTATTATTCGGTATTCTTTCTATGGGACCAATCCCTGATCATATAGCTTTCATTATGGATGGAAACCGAAGATATTCCAAGAAAAACAAATTAGAGGAAGGAACAGGCCATAACTTAGGGTTTACTGCTCTAACATCCATGCTTAAGTACTGCTATGAACTCGAGGTAAAATACATAACTGTATACGCCTTTAGTATTGATAATTTCAAAAGACGGCCTGAAGAAGTTAAGTCTTTAATGGAGCTTATACGGGAGAAAATAGAAAGCTTGATTAAAGAGGATAGTATTGTTAACCAACATGGAGTTAGAGTTTACTTTGTTGGGGACTTAAAGTTACTAGATGACTCAGTAAGGTTAGCTGCTGAAAAGGCTATGGAAGTTACTGCTGGTAACTCCAAAGCCGTGCTGTCAATTTGTATTGCGTACACTTCTACGAATGAGATTGTGAATGCTGTTGAACAATCTTGTGTAGAAAAATGGGATGAACTTAATAGTTTAACCAAAAAGTCGATAAGTGTGATGGATGTTGAGAAGCATATGTATATGAGAGTTGCTCCGAATCCTGATATAGTGGTAAGGACTTCTGGTGAAAACCGCTTGAGTAATTTTCTTCTGTGGCAGAGTGCAAACTCTATTCTGTATAACCCCACCGCGCTTTGGCCTGAGATTGGTCTTCGGCATTTAGTTTGGGCTGTGCTGAACTTCCAAAGAAATCAAGCTTGTTTGGAAACGAAAAAGAAGCAACAACGCTGATGTTACGATGTACGGAGTAGTTGATGTGATGATAAGATTAGGAGTTAATTTTGTGAACTACATGAAGATAATTTCTTGTATACAAATTAGTTTGCAAATCATAATTTTGTAGGTTATATAGAATCATTATTACTGCATTTCTCCTGTTTACGAGTCTGGTAAAAACATGTCAAGGAAGCTTTATGTACCTTCTCTTTACCACAAAGCA ATGGAGGGAATGTTCTCAAGATCAATACCAACATTGAACTCGTCTTCCTCCATTCGTCGCTCAGCCATTGACCCAACTCGGGCTTCGAGATCAGGAAAAGTTGACAGAGAAAGAACTCAAATATTTGGTTTGATGGGGAACAAAGAAAACCAGAACATGTTAACAAGTAACTTGGGCAATATTGCACGGAGATTATTATTCGGTATTCTTTCTATGGGACCAATCCCTGATCATATAGCTTTCATTATGGATGGAAACCGAAGATATTCCAAGAAAAACAAATTAGAGGAAGGAACAGGCCATAACTTAGGGTTTACTGCTCTAACATCCATGCTTAAGTACTGCTATGAACTCGAGGTAAAATACATAACTGTATACGCCTTTAGTATTGATAATTTCAAAAGACGGCCTGAAGAAGTTAAGTCTTTAATGGAGCTTATACGGGAGAAAATAGAAAGCTTGATTAAAGAGGATAGTATTGTTAACCAACATGGAGTTAGAGTTTACTTTGTTGGGGACTTAAAGTTACTAGATGACTCAGTAAGGTTAGCTGCTGAAAAGGCTATGGAAGTTACTGCTGGTAACTCCAAAGCCGTGCTGTCAATTTGTATTGCGTACACTTCTACGAATGAGATTGTGAATGCTGTTGAACAATCTTGTGTAGAAAAATGGGATGAACTTAATAGTTTAACCAAAAAGTCGATAAGTGTGATGGATGTTGAGAAGCATATGTATATGAGAGTTGCTCCGAATCCTGATATAGTGGTAAGGACTTCTGGTGAAAACCGCTTGAGTAATTTTCTTCTGTGGCAGAGTGCAAACTCTATTCTGTATAACCCCACCGCGCTTTGGCCTGAGATTGGTCTTCGGCATTTAGTTTGGGCTGTGCTGAACTTCCAAAGAAATCAAGCTTGTTTGGAAACGAAAAAGAAGCAACAACGCTGA MEGMFSRSIPTLNSSSSIRRSAIDPTRASRSGKVDRERTQIFGLMGNKENQNMLTSNLGNIARRLLFGILSMGPIPDHIAFIMDGNRRYSKKNKLEEGTGHNLGFTALTSMLKYCYELEVKYITVYAFSIDNFKRRPEEVKSLMELIREKIESLIKEDSIVNQHGVRVYFVGDLKLLDDSVRLAAEKAMEVTAGNSKAVLSICIAYTSTNEIVNAVEQSCVEKWDELNSLTKKSISVMDVEKHMYMRVAPNPDIVVRTSGENRLSNFLLWQSANSILYNPTALWPEIGLRHLVWAVLNFQRNQACLETKKKQQR Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo17090.1 vs. NCBI nr
Match: gi|902228721|gb|KNA21238.1| (hypothetical protein SOVF_045140 [Spinacia oleracea]) HSP 1 Score: 537.3 bits (1383), Expect = 1.700e-149 Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 1
BLAST of Spo17090.1 vs. NCBI nr
Match: gi|902188019|gb|KNA11043.1| (hypothetical protein SOVF_138730 [Spinacia oleracea]) HSP 1 Score: 521.9 bits (1343), Expect = 7.600e-145 Identity = 264/270 (97.78%), Postives = 266/270 (98.52%), Query Frame = 1
BLAST of Spo17090.1 vs. NCBI nr
Match: gi|870858867|gb|KMT10355.1| (hypothetical protein BVRB_5g121040 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 431.4 bits (1108), Expect = 1.300e-117 Identity = 222/321 (69.16%), Postives = 254/321 (79.13%), Query Frame = 1
BLAST of Spo17090.1 vs. NCBI nr
Match: gi|731336417|ref|XP_010679242.1| (PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 426.0 bits (1094), Expect = 5.600e-116 Identity = 212/284 (74.65%), Postives = 239/284 (84.15%), Query Frame = 1
BLAST of Spo17090.1 vs. NCBI nr
Match: gi|527206399|gb|EPS71981.1| (hypothetical protein M569_02778, partial [Genlisea aurea]) HSP 1 Score: 360.1 bits (923), Expect = 3.800e-96 Identity = 173/262 (66.03%), Postives = 217/262 (82.82%), Query Frame = 1
BLAST of Spo17090.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RP33_SPIOL (Alkyl transferase OS=Spinacia oleracea GN=SOVF_045140 PE=3 SV=1) HSP 1 Score: 537.3 bits (1383), Expect = 1.200e-149 Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 1
BLAST of Spo17090.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWF5_SPIOL (Alkyl transferase OS=Spinacia oleracea GN=SOVF_138730 PE=3 SV=1) HSP 1 Score: 521.9 bits (1343), Expect = 5.300e-145 Identity = 264/270 (97.78%), Postives = 266/270 (98.52%), Query Frame = 1
BLAST of Spo17090.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C9F2_BETVU (Alkyl transferase OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g121040 PE=3 SV=1) HSP 1 Score: 431.4 bits (1108), Expect = 9.400e-118 Identity = 222/321 (69.16%), Postives = 254/321 (79.13%), Query Frame = 1
BLAST of Spo17090.1 vs. UniProtKB/TrEMBL
Match: S8D3K5_9LAMI (Alkyl transferase (Fragment) OS=Genlisea aurea GN=M569_02778 PE=3 SV=1) HSP 1 Score: 360.1 bits (923), Expect = 2.600e-96 Identity = 173/262 (66.03%), Postives = 217/262 (82.82%), Query Frame = 1
BLAST of Spo17090.1 vs. UniProtKB/TrEMBL
Match: K7WCI9_SOLLC (Alkyl transferase OS=Solanum lycopersicum GN=CPT3 PE=3 SV=1) HSP 1 Score: 356.7 bits (914), Expect = 2.900e-95 Identity = 174/285 (61.05%), Postives = 217/285 (76.14%), Query Frame = 1
BLAST of Spo17090.1 vs. ExPASy Swiss-Prot
Match: DDPS6_ARATH (Dehydrodolichyl diphosphate synthase 6 OS=Arabidopsis thaliana GN=At2g17570 PE=2 SV=2) HSP 1 Score: 332.4 bits (851), Expect = 5.300e-90 Identity = 161/279 (57.71%), Postives = 215/279 (77.06%), Query Frame = 1
BLAST of Spo17090.1 vs. ExPASy Swiss-Prot
Match: HRT2_HEVBR (Rubber cis-polyprenyltransferase HRT2 OS=Hevea brasiliensis GN=HRT2 PE=1 SV=1) HSP 1 Score: 281.2 bits (718), Expect = 1.400e-74 Identity = 143/271 (52.77%), Postives = 195/271 (71.96%), Query Frame = 1
BLAST of Spo17090.1 vs. ExPASy Swiss-Prot
Match: DDPS8_ARATH (Dehydrodolichyl diphosphate synthase 8 OS=Arabidopsis thaliana GN=At5g60510 PE=2 SV=2) HSP 1 Score: 245.4 bits (625), Expect = 8.500e-64 Identity = 121/255 (47.45%), Postives = 174/255 (68.24%), Query Frame = 1
BLAST of Spo17090.1 vs. ExPASy Swiss-Prot
Match: DDPS7_ARATH (Dehydrodolichyl diphosphate synthase 7 OS=Arabidopsis thaliana GN=At5g60500 PE=2 SV=1) HSP 1 Score: 243.4 bits (620), Expect = 3.200e-63 Identity = 122/255 (47.84%), Postives = 175/255 (68.63%), Query Frame = 1
BLAST of Spo17090.1 vs. ExPASy Swiss-Prot
Match: DHDDS_MOUSE (Dehydrodolichyl diphosphate synthase complex subunit Dhdds OS=Mus musculus GN=Dhdds PE=2 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 8.300e-51 Identity = 106/245 (43.27%), Postives = 149/245 (60.82%), Query Frame = 1
BLAST of Spo17090.1 vs. TAIR (Arabidopsis)
Match: AT2G17570.1 (Undecaprenyl pyrophosphate synthetase family protein) HSP 1 Score: 332.4 bits (851), Expect = 3.000e-91 Identity = 161/279 (57.71%), Postives = 215/279 (77.06%), Query Frame = 1
BLAST of Spo17090.1 vs. TAIR (Arabidopsis)
Match: AT5G60510.1 (Undecaprenyl pyrophosphate synthetase family protein) HSP 1 Score: 245.4 bits (625), Expect = 4.800e-65 Identity = 121/255 (47.45%), Postives = 174/255 (68.24%), Query Frame = 1
BLAST of Spo17090.1 vs. TAIR (Arabidopsis)
Match: AT5G60500.1 (Undecaprenyl pyrophosphate synthetase family protein) HSP 1 Score: 243.4 bits (620), Expect = 1.800e-64 Identity = 122/255 (47.84%), Postives = 175/255 (68.63%), Query Frame = 1
BLAST of Spo17090.1 vs. TAIR (Arabidopsis)
Match: AT5G58784.1 (Undecaprenyl pyrophosphate synthetase family protein) HSP 1 Score: 128.6 bits (322), Expect = 6.600e-30 Identity = 75/229 (32.75%), Postives = 120/229 (52.40%), Query Frame = 1
BLAST of Spo17090.1 vs. TAIR (Arabidopsis)
Match: AT5G58780.1 (Undecaprenyl pyrophosphate synthetase family protein) HSP 1 Score: 126.3 bits (316), Expect = 3.300e-29 Identity = 72/231 (31.17%), Postives = 125/231 (54.11%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo17090.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo17090.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo17090.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo17090.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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