Spo24554 (gene)

Overview
NameSpo24554
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 11013808 .. 11018470 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAATAACAAGTTCATCGTTAATGTTCACGAAAAGATAAAGAGAAATTAGAAAAAGAAAAATTGTGTTCGTCGTTATTCTCAATTCCCAGTAGCGCCATGTTTTTATTTTCGTTGGCCGACGCCGCCGACCTCAAAATTCACTCATCTCCATCTCTCGGACCTAAAACCTTCAATTGAATTCGCAGTTTTGCGATTCATGTTATTCTAAATGAAAATAATGGCTTTTCTATCTTCCCCCTCTCTATATCCTTGACCAAAGATGCAATGGAATTAGTCCATGTACGGCGGGCGCCATTAACCTTGAATTCGATCGCCCTATGCGCAACAACATTTGCTTATTTGGTAATGTTTTCTCCCTCTTCTATACTTTCATGATCTTTTCCTTTAAAAATAAATTAGGGTTTGATTTAGCCTCTTTGGTTCAAGTGATTGAAATTGTGTTCAGATAACGCTGACAATTTTTTGAATTGCCATTATCTAATTCGTTCTTTGTATGTTCCGTAAGGTATTTTTCTTTAATTAATAATTTAATACCATTAATATCAAGCCTTTTTTGTATGAATTGAATTATTAGTTGAATCTTGTATTCCAGATTGAAACTCCTGTAATTTATTCAAATTGGAAGGCAAAACTGATTTTATTCTCTTCTGCGTTTGGGGTAAATCTTGGGCATACGGGTTATAGTGATTGTGAAGAAATTGATTCCAACATGAGAGAACGATATTGAATGATTTAGAGCTGTTAGACACTAGGCTTGCTAAGTAGAGGTTTTCTCATACTGAAACTTTGGTGGAAGGAAATGGAAAGGGTTTGGCTGAAGAATTGGATGGTTCTAGAAGGATATATGAAACTTACAAGCAGGATTTACTTCTTGTTAATAGTTGTAATTATAGTTTTGGAGCTCACGATGTAAAAGAACAGGTTTTTCACTACTCTTTCTTGTAGGGAATATGGAAGTCGTGCCTAATATATTTTCTTTTATTATAGAAGTTACAACTTTGTTTTTTTCACCTTTCAAAGTTTGAGAAAAATATGTTTCCAAGTTCAAATTCAGTTGATCATAACGAAAAATAGATGTGATAAGTACAGATAAGTTAATTTCAAGTGAAAAGAATGAATTTTTAGTAATCAGAGTGGTAGTCTTCTTAAGCTAGCTCAACTGAGTACAAAATTTGACTATGCTCTAGATTTCATATACACTTTTCCTGTAATTTTCAGGACATGTTTTGAAGAGAGTAGTGGCACACAGTCGTTGCGGGGTGATACTGCATTACTGAGTACCTGGAATCTGCGGCTTTCAGCAAAGTTGTTCAGGCTCATGATATCCAGACTGGAGTTTATGTTTGCCTGAAAGTCATTAGAAATGACAGATTTTGTTTGTAAAAGTTTGGACGAAATCGAACTTCTCAAGTATGTCAACAAGAATGATCCTGCAGATAAGCACCTTTTACATCTCTATGACTACTTTTACCATCTCTTCCCCCCCCCCCCCCCGNTCCCCCCCCCCCCCATGGGTCCGTGACATGCAGGCTTAGATTTTTATTGTCCTATACGAAGTGATTAATTCCAGATTCTTGTTTACGTATACAGAAGCACCTTTTCATTGTATGTGAACTTCTTCGAGCTAATATATATGACTTTCAGAAATATAATATAGAATCTGGTGGAGAACCCTACTTTACAATGAGTAGATTGCAGGTACTTGTTCTACTAAGTTGCATTTATCTGTTAATGGAACCCATGAAACTGGTTTTTAACGATGTTTTTTAGCATTTAAATGTAAGGAGCTCCTATAAATCCTGTTTTTGTAAATCATAGCACGGGTCCTAATTGTCGTTGGCGCTTTTCACCCTAATATCACTTCAAGTTGTTTTCTATTTCCTGCCTGGTTTTAAGTATGGCATCACGACCCTAATATTTTTTCTTTGATATATGAAGATTTGTTTTAATTTTATAAGAACCAATTAGTCTATGGTTAGGTGGGATTCAATTTGCCTCAGCGCAATTGCCTCATCTGGAGCACTTATAGGCTTTTTGGACTTTTCATATGTGACTTTGTTTCTGAGTTAGGTAGTTAAACAAAATGCAGGCTCTAAATTTAAACGATCCAGAGCTCAAAGACCTGAACCTTACTTCATGTAGAAACTTGCAGGTTTGTATTTTAGATGGTCTAATTTACAATGGATGATTTTAGCAAATACTGCTAGTTGTTAAGGTTTCTAATGAGGTTTCTTGCTTTATTTAGAGAGGTTACTACTCTAGTTTCCCAATTTGGAATGCGTCAAATTTCCTTGCGTTAGATTATTGAAACTGAGGTTATATCAATTCCCTTGTACAAGTTCAATGATAAACCTTCCCCTGACTATGTTGGTCTTAATTACTGTTGTTTCATATGTTGATTATGAAGTATAACATGAAAAGGGTTCCATTGAAATTTTATGCAATAAAAAAATCTTCTTGTAAAGAAGCTGGCCAATGCCTAGTAAGTTAGTAGCCTTAGTAAAGAAATCTAGTGGATAATTTGGTCAGAAGCTTTTGTTTGTTAGTGTTATGTTCAAAATGAAAGCAACCTTGTTTATATTAACTGAAAAGATCAATCAGTTTTGACATTCATTGTGAAATTCTTGCAGATAAGAAAGTTCCACTAGAAAGCCAATTTCTAAGCAAGCGCATGGCTGGTGGAGATCCAAGAGAGTTGGATTTCCTCACATTCTCATCTAGCAAGTACATATTATACTTTGTATTACTTGCATAAGATACTAAATTATCATGGTTTTTATGTTTAAATTGCCGGTGCGGTGGTGCAAAGTCTTTTTTGTTTGTTAAATTGTCGGTGCGATAGTACATACCCATCCTGCTCATGTTTGTCAAAGAATTTAGATTTATTTTGGATTGTTTTGCAAAAGAGTTATTCTATAGTATGAGCTAGATTGGTTTAAGAAATAACTTTGCTTGTTTCTTTGCTAGTTTTTTGCAAGCTATAATTTTGTTTTAATTTAACCGAGCAACGCTTTAATGTGAATCAACAAAACTAGTATTACTAGGTAGCATTCGGCATAACTTACCAGGGTTTTGAACATTGTTGTTGGGGGATGAAGAAGATGTACATTACTTTTCCATATAGCACTTTCTTTCGGACGTTCATCTCATCTTGAACTTACCTACCTGGCAACGTAAAAGTATTTTTTGTTCCATATACTGCGACAAAGGAATACTTTCAGTTGCTCTAAATTTTTTTTGTTCCTTAGTTCTAAGTTTCTAATGTCTGGCAAGAGATAGTACATAGTCATGCAATAATCCCCTTTCATTCCTTCCCCTGTTATCAGCATGCAATATTGTTCTATTGTTAAAATATTACCTGAAAAGAAAACCTAGTATATTTAATTTCTTTTATTCCACCACTTTGCTGATTAACTATATATGCTTAATTTTTTGTTCATTCCTGGCATGAAGACCACCAGTCACGATATTTAGGTGAATAGGTTAAGTCAGTGAATAACGTTAATTAGGCTTTATCTCCACACAAGCTAATACTGGCAGTCTTCTCAAATAGTGTGTAATAGTCGTATAGGGGCACTTTTGGCATTGCATTATGATTCTATTACTTGGTAGCTTGAGGGATAAGTTAACTGGTTAGAGTAGAGAGGGAAGAAAAAGAAGCAGAATATCTGTACATATGGAGGATATAAGTGAGAACCATAATCTTCTTTTATATTTAAATATTCAGTACATTACATAATTACATAATGGTGGTCGTATGTGGTTGCTGACATCTTTGTTTTGTACTTTTGTCAATGGTGTAGGAAGTACGTTCTGTTTTTGTATTCTTCAGATCTAGATTTGGTGCTGCAATTGCTTCACGTTTACGACAATCTGAGAAACATACAGAATTGGTTAAGGAGCAAGCTCCTGAGCCAGATGATGTGTACCGGCCATTTTCCAAGAAACGTTCTTGTAAAGATGGATGTCTAGAGTGGTAATAATAGTCGCAAGCACACATTTCTGACTGTTCTATTTCTTATACCAGTTGTGCTTGTGCAAGTCTTGCCAATCTGTCCCAACTGGAGGTCTGGTTCCCCTTCTTGGCAAGCATTTTAACCGCATAAGTGATTATTCCATCTCCCGAGTTTCTGTGAAAATTGCTAGTTCAATCTGCCTGTCATAGAAAAATTTTAGAATCGTAATTTTTTTCTTCTTTTAATCATCATTTTAATTGGGCCTTAAACTTATGTTAGATTTTAAGATTTGGAGAGAAGAAATCAAGGAGGAAGAAGGTTTATTGAAGTCTGCATGGAAGGCTACCCTGAAGAGCTCTCAAGCTTTTGTCGGACTACATTTTTGCATATAGTTGTGTGTTGATCAACTAGTTAGATTTTTATTTTTTTCTTTTCGATTGAACAAGAATTATTTATCTTTAGCTTTTTAAGAATTTTTTTATTTAAAGATGTGATTTTTGATTTACCATAACTTGAAATTCTATTGTCAAAAATATTTTGAGTAATGAAATTTTAATTTGTTTAATTGATTTATATCTATATTGGTTCACAGGGAAAATGTAGGTGCTTCGAAAAGCGCAAATAATATTATTATGATTGCAATATTAACGACATAATAGTTGGTCGTTATTGCCAAAATTCAAATTTTTTGACCGTTGGGAAGG

mRNA sequence

AAGAAATAACAAGTTCATCGTTAATGTTCACGAAAAGATAAAGAGAAATTAGAAAAAGAAAAATTGTGTTCGTCGTTATTCTCAATTCCCAGTAGCGCCATGTTTTTATTTTCGTTGGCCGACGCCGCCGACCTCAAAATTCACTCATCTCCATCTCTCGGACCTAAAACCTTCAATTGAATTCGCAGTTTTGCGATTCATGTTATTCTAAATGAAAATAATGGCTTTTCTATCTTCCCCCTCTCTATATCCTTGACCAAAGATGCAATGGAATTAGTCCATGTACGGCGGGCGCCATTAACCTTGAATTCGATCGCCCTATGCGCAACAACATTTGCTTATTTGGACATGTTTTGAAGAGAGTAGTGGCACACAGTCGTTGCGGGATTGCAGATAAGAAAGTTCCACTAGAAAGCCAATTTCTAAGCAAGCGCATGGCTGGTGGAGATCCAAGAGAGTTGGATTTCCTCACATTCTCATCTAGCAAGAAGTACGTTCTGTTTTTGTATTCTTCAGATCTAGATTTGGTGCTGCAATTGCTTCACTTGTGCTTGTGCAAGTCTTGCCAATCTGTCCCAACTGGAGATTTTAAGATTTGGAGAGAAGAAATCAAGGAGGAAGAAGGTTTATTGAAGTCTGCATGGAAGGCTACCCTGAAGAGCTCTCAAGCTTTTGTCGGACTACATTTTTGCATATAGTTGTGTGTTGATCAACTAGTTAGATTTTTATTTTTTTCTTTTCGATTGAACAAGAATTATTTATCTTTAGCTTTTTAAGAATTTTTTTATTTAAAGATGTGATTTTTGATTTACCATAACTTGAAATTCTATTGTCAAAAATATTTTGAGTAATGAAATTTTAATTTGTTTAATTGATTTATATCTATATTGGTTCACAGGGAAAATGTAGGTGCTTCGAAAAGCGCAAATAATATTATTATGATTGCAATATTAACGACATAATAGTTGGTCGTTATTGCCAAAATTCAAATTTTTTGACCGTTGGGAAGG

Coding sequence (CDS)

ATGCGCAACAACATTTGCTTATTTGGACATGTTTTGAAGAGAGTAGTGGCACACAGTCGTTGCGGGATTGCAGATAAGAAAGTTCCACTAGAAAGCCAATTTCTAAGCAAGCGCATGGCTGGTGGAGATCCAAGAGAGTTGGATTTCCTCACATTCTCATCTAGCAAGAAGTACGTTCTGTTTTTGTATTCTTCAGATCTAGATTTGGTGCTGCAATTGCTTCACTTGTGCTTGTGCAAGTCTTGCCAATCTGTCCCAACTGGAGATTTTAAGATTTGGAGAGAAGAAATCAAGGAGGAAGAAGGTTTATTGAAGTCTGCATGGAAGGCTACCCTGAAGAGCTCTCAAGCTTTTGTCGGACTACATTTTTGCATATAG

Protein sequence

MRNNICLFGHVLKRVVAHSRCGIADKKVPLESQFLSKRMAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLHLCLCKSCQSVPTGDFKIWREEIKEEEGLLKSAWKATLKSSQAFVGLHFCI
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24554.1Spo24554.1mRNA


Homology
[Close]
BLAST of Spo24554.1 vs. NCBI nr
Match: gi|902197033|gb|KNA13297.1| (hypothetical protein SOVF_118020 [Spinacia oleracea])

HSP 1 Score: 75.9 bits (185), Expect = 5.700e-11
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1 

		  

Query: 39 MAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLHL 77
          MAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLH+
Sbjct: 1  MAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLHV 38
[Close]
BLAST of Spo24554.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3B9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_118020 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.000e-11
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1 

		  

Query: 39 MAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLHL 77
          MAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLH+
Sbjct: 1  MAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLHV 38
The following BLAST results are available for this feature:
BLAST of Spo24554.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902197033|gb|KNA13297.1|5.7e-1197.3hypothetical protein SOVF_1180... [more]
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BLAST of Spo24554.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9R3B9_SPIOL4.0e-1197.3Uncharacterized protein OS=Spi... [more]
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BLAST of Spo24554.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24554.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005840 ribosome
cellular_component GO:0005634 nucleus
cellular_component GO:0030126 COPI vesicle coat
molecular_function GO:0005515 protein binding
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005198 structural molecule activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo107560.70Barchart | Table
Spo113520.69Barchart | Table
Spo137870.68Barchart | Table
Spo095890.67Barchart | Table
Spo229140.66Barchart | Table
Spo226940.65Barchart | Table