Spo11195 (gene)

Overview
NameSpo11195
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionELF4 protein
Locationchr1 : 26460409 .. 26460852 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTACTCGGGAGCTGAATCGAGTATGGAAGACGGCGATCGTCGGCAAAACATGGTGTCTGCTGGAGGCGCCGGCAACCGTCGCCGTAGAACAAACAATATGGACGAGTTCTCCGGCGACGGTTGCGGGAACCCGCAGGCTTGGAATGCCTTCGCGGACAGCTTCAGTGAGGTGCAGACGGTGCTGGATCGGAACAGGATGTTGATCCAGCAGGCGAACGAGAATCATCAGTCGAGGATCCCGGATAACATGAAAAAGAATGTGGCGATCATCCAGGAACTGAACGGAAACATCACGAAAGTGGCGTCGATTTACTCCGATTTGTCGGCGAATTTCAGCGGGAGCGTGAGGCAGCAACCGCAAGGCGGTGGCGGGAAGGGGAGTTGTAAAGGAGGAAATGGAAATAACGGGAGGAGGAATGGTGGAGGTGATCAAAGATGA

mRNA sequence

ATGTCTTACTCGGGAGCTGAATCGAGTATGGAAGACGGCGATCGTCGGCAAAACATGGTGTCTGCTGGAGGCGCCGGCAACCGTCGCCGTAGAACAAACAATATGGACGAGTTCTCCGGCGACGGTTGCGGGAACCCGCAGGCTTGGAATGCCTTCGCGGACAGCTTCAGTGAGGTGCAGACGGTGCTGGATCGGAACAGGATGTTGATCCAGCAGGCGAACGAGAATCATCAGTCGAGGATCCCGGATAACATGAAAAAGAATGTGGCGATCATCCAGGAACTGAACGGAAACATCACGAAAGTGGCGTCGATTTACTCCGATTTGTCGGCGAATTTCAGCGGGAGCGTGAGGCAGCAACCGCAAGGCGGTGGCGGGAAGGGGAGTTGTAAAGGAGGAAATGGAAATAACGGGAGGAGGAATGGTGGAGGTGATCAAAGATGA

Coding sequence (CDS)

ATGTCTTACTCGGGAGCTGAATCGAGTATGGAAGACGGCGATCGTCGGCAAAACATGGTGTCTGCTGGAGGCGCCGGCAACCGTCGCCGTAGAACAAACAATATGGACGAGTTCTCCGGCGACGGTTGCGGGAACCCGCAGGCTTGGAATGCCTTCGCGGACAGCTTCAGTGAGGTGCAGACGGTGCTGGATCGGAACAGGATGTTGATCCAGCAGGCGAACGAGAATCATCAGTCGAGGATCCCGGATAACATGAAAAAGAATGTGGCGATCATCCAGGAACTGAACGGAAACATCACGAAAGTGGCGTCGATTTACTCCGATTTGTCGGCGAATTTCAGCGGGAGCGTGAGGCAGCAACCGCAAGGCGGTGGCGGGAAGGGGAGTTGTAAAGGAGGAAATGGAAATAACGGGAGGAGGAATGGTGGAGGTGATCAAAGATGA

Protein sequence

MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQPQGGGGKGSCKGGNGNNGRRNGGGDQR
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11195.1Spo11195.1mRNA


Homology
[Close]
BLAST of Spo11195.1 vs. NCBI nr
Match: gi|902227640|gb|KNA20765.1| (hypothetical protein SOVF_049350 [Spinacia oleracea])

HSP 1 Score: 278.9 bits (712), Expect = 5.200e-72
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 

		  

Query: 1   MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQ 60
           MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQ
Sbjct: 1   MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQ 60

Query: 61  TVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQ 120
           TVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQ
Sbjct: 61  TVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQ 120

Query: 121 PQGGGGKGSCKGGNGNNGRRNGGGDQR 148
           PQGGGGKGSCKGGNGNNGRRNGGGDQR
Sbjct: 121 PQGGGGKGSCKGGNGNNGRRNGGGDQR 147
[Close]
BLAST of Spo11195.1 vs. NCBI nr
Match: gi|731315048|ref|XP_010689700.1| (PREDICTED: protein EARLY FLOWERING 4-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 204.5 bits (519), Expect = 1.200e-49
Identity = 108/136 (79.41%), Postives = 121/136 (88.97%), Query Frame = 1 

		  

Query: 1   MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQ 60
           MSYSGAES MEDG RRQN+ SAGGAGNRRRRTN++++FSGDGCG+ ++WNAFADSFS+VQ
Sbjct: 1   MSYSGAESRMEDGTRRQNIASAGGAGNRRRRTNDVEDFSGDGCGDHESWNAFADSFSQVQ 60

Query: 61  TVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQ 120
           TVLDRNR+LIQQANENHQSR+PDNM KNVAIIQELNGNITKVASIY+DLS NFSG V+  
Sbjct: 61  TVLDRNRLLIQQANENHQSRMPDNMVKNVAIIQELNGNITKVASIYADLSTNFSGKVK-A 120

Query: 121 PQGGGGKGSCKGGNGN 137
           P GGGGKG   GG  N
Sbjct: 121 PGGGGGKGGSSGGRRN 135
[Close]
BLAST of Spo11195.1 vs. NCBI nr
Match: gi|902227639|gb|KNA20764.1| (hypothetical protein SOVF_049340 [Spinacia oleracea])

HSP 1 Score: 196.1 bits (497), Expect = 4.400e-47
Identity = 111/145 (76.55%), Postives = 121/145 (83.45%), Query Frame = 1 

		  

Query: 1   MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRT----NNMDEFSGDGCGNPQAWNAFADSF 60
           MSY G  SSMEDG+R QNM SAG AGNRRRRT    N+  EFSGDGC +P+AW+ FADS+
Sbjct: 1   MSYFGGGSSMEDGNREQNMASAGDAGNRRRRTSGYHNDTGEFSGDGCRDPEAWSNFADSY 60

Query: 61  SEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGS 120
           S+VQTVLDRNRMLIQQANENHQSRIPDNM KNVAIIQELNGNITKVASIYSDLS NF+G 
Sbjct: 61  SQVQTVLDRNRMLIQQANENHQSRIPDNMVKNVAIIQELNGNITKVASIYSDLSTNFTGR 120

Query: 121 VRQQPQGGGGKGSCKGGNGNNGRRN 142
           VRQQ QG GGKG   GG+ + GRRN
Sbjct: 121 VRQQRQGSGGKGVGNGGS-SGGRRN 144
[Close]
BLAST of Spo11195.1 vs. NCBI nr
Match: gi|731315044|ref|XP_010689678.1| (PREDICTED: protein EARLY FLOWERING 4-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 195.3 bits (495), Expect = 7.600e-47
Identity = 107/140 (76.43%), Postives = 119/140 (85.00%), Query Frame = 1 

		  

Query: 2   SYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQT 61
           S S AES MEDG+RR N V+ GGAGNRRRR++++DEFSG+GCG+P+ WNAFADSFS VQT
Sbjct: 4   SLSRAESIMEDGNRRHNTVADGGAGNRRRRSDHVDEFSGEGCGDPETWNAFADSFSRVQT 63

Query: 62  VLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQP 121
           VLDRNRMLIQQANENHQSR+PDNM+KNVAIIQELNGNI+KVASIYSDLS NFSG VRQ  
Sbjct: 64  VLDRNRMLIQQANENHQSRMPDNMEKNVAIIQELNGNISKVASIYSDLSTNFSGRVRQHR 123

Query: 122 QGGGGKGSCKGGNGNNGRRN 142
           QGG  KGS       NGRRN
Sbjct: 124 QGGVEKGS------GNGRRN 137
[Close]
BLAST of Spo11195.1 vs. NCBI nr
Match: gi|870867338|gb|KMT18207.1| (hypothetical protein BVRB_2g023780 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 190.7 bits (483), Expect = 1.900e-45
Identity = 102/132 (77.27%), Postives = 114/132 (86.36%), Query Frame = 1 

		  

Query: 10  MEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQTVLDRNRML 69
           MEDG+RR N V+ GGAGNRRRR++++DEFSG+GCG+P+ WNAFADSFS VQTVLDRNRML
Sbjct: 1   MEDGNRRHNTVADGGAGNRRRRSDHVDEFSGEGCGDPETWNAFADSFSRVQTVLDRNRML 60

Query: 70  IQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQPQGGGGKGS 129
           IQQANENHQSR+PDNM+KNVAIIQELNGNI+KVASIYSDLS NFSG VRQ  QGG  KGS
Sbjct: 61  IQQANENHQSRMPDNMEKNVAIIQELNGNISKVASIYSDLSTNFSGRVRQHRQGGVEKGS 120

Query: 130 CKGGNGNNGRRN 142
                  NGRRN
Sbjct: 121 ------GNGRRN 126
[Close]
BLAST of Spo11195.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMM3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_049350 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 3.600e-72
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 

		  

Query: 1   MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQ 60
           MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQ
Sbjct: 1   MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQ 60

Query: 61  TVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQ 120
           TVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQ
Sbjct: 61  TVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQ 120

Query: 121 PQGGGGKGSCKGGNGNNGRRNGGGDQR 148
           PQGGGGKGSCKGGNGNNGRRNGGGDQR
Sbjct: 121 PQGGGGKGSCKGGNGNNGRRNGGGDQR 147
[Close]
BLAST of Spo11195.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D1Q2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g023800 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 8.700e-50
Identity = 108/136 (79.41%), Postives = 121/136 (88.97%), Query Frame = 1 

		  

Query: 1   MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQ 60
           MSYSGAES MEDG RRQN+ SAGGAGNRRRRTN++++FSGDGCG+ ++WNAFADSFS+VQ
Sbjct: 1   MSYSGAESRMEDGTRRQNIASAGGAGNRRRRTNDVEDFSGDGCGDHESWNAFADSFSQVQ 60

Query: 61  TVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQ 120
           TVLDRNR+LIQQANENHQSR+PDNM KNVAIIQELNGNITKVASIY+DLS NFSG V+  
Sbjct: 61  TVLDRNRLLIQQANENHQSRMPDNMVKNVAIIQELNGNITKVASIYADLSTNFSGKVK-A 120

Query: 121 PQGGGGKGSCKGGNGN 137
           P GGGGKG   GG  N
Sbjct: 121 PGGGGGKGGSSGGRRN 135
[Close]
BLAST of Spo11195.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RPE7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_049340 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.100e-47
Identity = 111/145 (76.55%), Postives = 121/145 (83.45%), Query Frame = 1 

		  

Query: 1   MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRT----NNMDEFSGDGCGNPQAWNAFADSF 60
           MSY G  SSMEDG+R QNM SAG AGNRRRRT    N+  EFSGDGC +P+AW+ FADS+
Sbjct: 1   MSYFGGGSSMEDGNREQNMASAGDAGNRRRRTSGYHNDTGEFSGDGCRDPEAWSNFADSY 60

Query: 61  SEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGS 120
           S+VQTVLDRNRMLIQQANENHQSRIPDNM KNVAIIQELNGNITKVASIYSDLS NF+G 
Sbjct: 61  SQVQTVLDRNRMLIQQANENHQSRIPDNMVKNVAIIQELNGNITKVASIYSDLSTNFTGR 120

Query: 121 VRQQPQGGGGKGSCKGGNGNNGRRN 142
           VRQQ QG GGKG   GG+ + GRRN
Sbjct: 121 VRQQRQGSGGKGVGNGGS-SGGRRN 144
[Close]
BLAST of Spo11195.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CX73_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g023780 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.300e-45
Identity = 102/132 (77.27%), Postives = 114/132 (86.36%), Query Frame = 1 

		  

Query: 10  MEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQTVLDRNRML 69
           MEDG+RR N V+ GGAGNRRRR++++DEFSG+GCG+P+ WNAFADSFS VQTVLDRNRML
Sbjct: 1   MEDGNRRHNTVADGGAGNRRRRSDHVDEFSGEGCGDPETWNAFADSFSRVQTVLDRNRML 60

Query: 70  IQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQPQGGGGKGS 129
           IQQANENHQSR+PDNM+KNVAIIQELNGNI+KVASIYSDLS NFSG VRQ  QGG  KGS
Sbjct: 61  IQQANENHQSRMPDNMEKNVAIIQELNGNISKVASIYSDLSTNFSGRVRQHRQGGVEKGS 120

Query: 130 CKGGNGNNGRRN 142
                  NGRRN
Sbjct: 121 ------GNGRRN 126
[Close]
BLAST of Spo11195.1 vs. UniProtKB/TrEMBL
Match: Q6UEI6_MESCR (Early flowering 4 OS=Mesembryanthemum crystallinum GN=ELF4 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.000e-34
Identity = 96/146 (65.75%), Postives = 106/146 (72.60%), Query Frame = 1 

		  

Query: 1   MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDE-------FSGDGCGNPQAWNAFA 60
           MSYSGAESSMEDG        AG   NRRRR+NN +        FSG   G+P  WNAFA
Sbjct: 2   MSYSGAESSMEDGGNHHRQTLAG---NRRRRSNNNNNNNNGEEYFSG---GDPAEWNAFA 61

Query: 61  DSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANF 120
           +SFS+VQ+VLDRNRMLIQQANENHQSR+PDNM KNVAIIQELNGNI+KVASIYSDLS NF
Sbjct: 62  ESFSKVQSVLDRNRMLIQQANENHQSRVPDNMVKNVAIIQELNGNISKVASIYSDLSVNF 121

Query: 121 SGSVRQQPQGGGGKGSCKGGNGNNGR 140
           +G V Q  Q GG   S     G+NGR
Sbjct: 122 TGVVGQHRQQGGNSKS----GGSNGR 137
[Close]
BLAST of Spo11195.1 vs. ExPASy Swiss-Prot
Match: ELF4_ARATH (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.700e-18
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1 

		  

Query: 26  GNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQTVLDRNRMLIQQANENHQSRIPDNM 85
           G  +RR N  +E   +   +P  W     +F +VQ+VLDRNR LIQQ N+NHQSR+ DNM
Sbjct: 5   GETKRRRNVAEE--AEQGEDPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNM 64

Query: 86  KKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQPQGGGGKGS 130
            KNVA+IQELNGNI+KV ++YSDL+ +FS        G  G G+
Sbjct: 65  SKNVALIQELNGNISKVVNMYSDLNTSFSSGFHGGKNGHDGGGA 106
[Close]
BLAST of Spo11195.1 vs. ExPASy Swiss-Prot
Match: EF4L1_ARATH (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana GN=EFL1 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.500e-15
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 1 

		  

Query: 47  QAWNAFADSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIY 106
           + W+  ++ F   Q  LD+NR LIQ+ NENH SRIPDN+ +NV +I E+NGNI++V  IY
Sbjct: 36  EVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVMEIY 95

Query: 107 SDLSANFSGSVRQQ 121
           SDLS NF+    Q+
Sbjct: 96  SDLSLNFAKKFDQR 109
[Close]
BLAST of Spo11195.1 vs. ExPASy Swiss-Prot
Match: EF4L3_ARATH (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana GN=EFL3 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.200e-14
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 1 

		  

Query: 52  FADSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSA 111
           F  SF +VQ +LD NR+LI + N+NH+S+IPDN+ +NV +I+ELN N+ +VA +Y DLS 
Sbjct: 24  FEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRVAHLYVDLSN 83

Query: 112 NFSGSVRQQPQGGGGKG 129
           NFS S+    +G   +G
Sbjct: 84  NFSKSMEASSEGDSSEG 100
[Close]
BLAST of Spo11195.1 vs. ExPASy Swiss-Prot
Match: EF4L4_ARATH (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.900e-11
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 1 

		  

Query: 51  AFADSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLS 110
           +F  SF +VQ +LD+NR+LI + N+NH+S+ PDN+ +NV +I+ELN NI +VAS+Y DLS
Sbjct: 22  SFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVASLYGDLS 81

Query: 111 ANFSGSVRQQPQGGGGKGSCKGGNGNNGRRNGG 144
            +F+ SV    +G         G  N  R   G
Sbjct: 82  HSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114
[Close]
BLAST of Spo11195.1 vs. ExPASy Swiss-Prot
Match: EF4L2_ARATH (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana GN=EFL2 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.700e-9
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 1 

		  

Query: 52  FADSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSA 111
           F  SF +VQ +LD+NR+LI + N+NH+S+  D++ +NV +I+ELN NI  VAS+Y DLS 
Sbjct: 27  FQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRELNNNIRTVASLYGDLSH 86

Query: 112 NFSGSVRQQPQGGGGKGSCKGGNGNNGRRNGGG 145
           +F+ SV    +G         G  NN +R   G
Sbjct: 87  SFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119
[Close]
BLAST of Spo11195.1 vs. TAIR (Arabidopsis)
Match: AT2G40080.1 (Protein of unknown function (DUF1313))

HSP 1 Score: 91.3 bits (225), Expect = 5.400e-19
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1 

		  

Query: 26  GNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQTVLDRNRMLIQQANENHQSRIPDNM 85
           G  +RR N  +E   +   +P  W     +F +VQ+VLDRNR LIQQ N+NHQSR+ DNM
Sbjct: 5   GETKRRRNVAEE--AEQGEDPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNM 64

Query: 86  KKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQPQGGGGKGS 130
            KNVA+IQELNGNI+KV ++YSDL+ +FS        G  G G+
Sbjct: 65  SKNVALIQELNGNISKVVNMYSDLNTSFSSGFHGGKNGHDGGGA 106
[Close]
BLAST of Spo11195.1 vs. TAIR (Arabidopsis)
Match: AT2G29950.1 (ELF4-like 1)

HSP 1 Score: 84.0 bits (206), Expect = 8.700e-17
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 1 

		  

Query: 47  QAWNAFADSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIY 106
           + W+  ++ F   Q  LD+NR LIQ+ NENH SRIPDN+ +NV +I E+NGNI++V  IY
Sbjct: 36  EVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVMEIY 95

Query: 107 SDLSANFSGSVRQQ 121
           SDLS NF+    Q+
Sbjct: 96  SDLSLNFAKKFDQR 109
[Close]
BLAST of Spo11195.1 vs. TAIR (Arabidopsis)
Match: AT2G06255.1 (ELF4-like 3)

HSP 1 Score: 80.1 bits (196), Expect = 1.300e-15
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 1 

		  

Query: 52  FADSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSA 111
           F  SF +VQ +LD NR+LI + N+NH+S+IPDN+ +NV +I+ELN N+ +VA +Y DLS 
Sbjct: 24  FEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRVAHLYVDLSN 83

Query: 112 NFSGSVRQQPQGGGGKG 129
           NFS S+    +G   +G
Sbjct: 84  NFSKSMEASSEGDSSEG 100
[Close]
BLAST of Spo11195.1 vs. TAIR (Arabidopsis)
Match: AT1G17455.1 (ELF4-like 4)

HSP 1 Score: 69.3 bits (168), Expect = 2.200e-12
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 1 

		  

Query: 51  AFADSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLS 110
           +F  SF +VQ +LD+NR+LI + N+NH+S+ PDN+ +NV +I+ELN NI +VAS+Y DLS
Sbjct: 22  SFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVASLYGDLS 81

Query: 111 ANFSGSVRQQPQGGGGKGSCKGGNGNNGRRNGG 144
            +F+ SV    +G         G  N  R   G
Sbjct: 82  HSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114
[Close]
BLAST of Spo11195.1 vs. TAIR (Arabidopsis)
Match: AT1G72630.1 (ELF4-like 2)

HSP 1 Score: 62.8 bits (151), Expect = 2.100e-10
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 1 

		  

Query: 52  FADSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSA 111
           F  SF +VQ +LD+NR+LI + N+NH+S+  D++ +NV +I+ELN NI  VAS+Y DLS 
Sbjct: 27  FQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRELNNNIRTVASLYGDLSH 86

Query: 112 NFSGSVRQQPQGGGGKGSCKGGNGNNGRRNGGG 145
           +F+ SV    +G         G  NN +R   G
Sbjct: 87  SFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119
The following BLAST results are available for this feature:
BLAST of Spo11195.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902227640|gb|KNA20765.1|5.2e-72100.hypothetical protein SOVF_0493... [more]
gi|731315048|ref|XP_010689700.1|1.2e-4979.4PREDICTED: protein EARLY FLOWE... [more]
gi|902227639|gb|KNA20764.1|4.4e-4776.5hypothetical protein SOVF_0493... [more]
gi|731315044|ref|XP_010689678.1|7.6e-4776.4PREDICTED: protein EARLY FLOWE... [more]
gi|870867338|gb|KMT18207.1|1.9e-4577.2hypothetical protein BVRB_2g02... [more]
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BLAST of Spo11195.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RMM3_SPIOL3.6e-72100.Uncharacterized protein OS=Spi... [more]
A0A0J8D1Q2_BETVU8.7e-5079.4Uncharacterized protein OS=Bet... [more]
A0A0K9RPE7_SPIOL3.1e-4776.5Uncharacterized protein OS=Spi... [more]
A0A0J8CX73_BETVU1.3e-4577.2Uncharacterized protein OS=Bet... [more]
Q6UEI6_MESCR1.0e-3465.7Early flowering 4 OS=Mesembrya... [more]
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BLAST of Spo11195.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ELF4_ARATH9.7e-1850.0Protein EARLY FLOWERING 4 OS=A... [more]
EF4L1_ARATH1.5e-1551.3Protein ELF4-LIKE 1 OS=Arabido... [more]
EF4L3_ARATH2.2e-1449.3Protein ELF4-LIKE 3 OS=Arabido... [more]
EF4L4_ARATH3.9e-1144.0Protein ELF4-LIKE 4 OS=Arabido... [more]
EF4L2_ARATH3.7e-943.0Protein ELF4-LIKE 2 OS=Arabido... [more]
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BLAST of Spo11195.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT2G40080.15.4e-1950.0Protein of unknown function (D... [more]
AT2G29950.18.7e-1751.3ELF4-like 1[more]
AT2G06255.11.3e-1549.3ELF4-like 3[more]
AT1G17455.12.2e-1244.0ELF4-like 4[more]
AT1G72630.12.1e-1043.0ELF4-like 2[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009741Protein of unknown function DUF1313PFAMPF07011DUF1313coord: 45..122
score: 1.3
NoneNo IPR availablePANTHERPTHR33469FAMILY NOT NAMEDcoord: 44..120
score: 2.0
NoneNo IPR availablePANTHERPTHR33469:SF5PROTEIN EARLY FLOWERING 4coord: 44..120
score: 2.0

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009649 entrainment of circadian clock
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0046686 response to cadmium ion
biological_process GO:0043087 regulation of GTPase activity
biological_process GO:0009408 response to heat
biological_process GO:0006457 protein folding
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0006857 oligopeptide transport
biological_process GO:0000160 phosphorelay signal transduction system
biological_process GO:0006560 proline metabolic process
biological_process GO:0006012 galactose metabolic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0006107 oxaloacetate metabolic process
biological_process GO:0030488 tRNA methylation
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0006265 DNA topological change
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0006007 glucose catabolic process
biological_process GO:0006534 cysteine metabolic process
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0006103 2-oxoglutarate metabolic process
biological_process GO:0006522 alanine metabolic process
biological_process GO:0009821 alkaloid biosynthetic process
biological_process GO:0006525 arginine metabolic process
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0070475 rRNA base methylation
biological_process GO:0015976 carbon utilization
biological_process GO:0006396 RNA processing
biological_process GO:0042753 positive regulation of circadian rhythm
biological_process GO:0009585 red, far-red light phototransduction
biological_process GO:0009909 regulation of flower development
biological_process GO:0010114 response to red light
biological_process GO:0006508 proteolysis
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008152 metabolic process
biological_process GO:0051026 chiasma assembly
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0032508 DNA duplex unwinding
biological_process GO:0006302 double-strand break repair
biological_process GO:0042138 meiotic DNA double-strand break formation
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0006312 mitotic recombination
biological_process GO:0010564 regulation of cell cycle process
biological_process GO:0007062 sister chromatid cohesion
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0009845 seed germination
biological_process GO:0000381 regulation of alternative mRNA splicing, via spliceosome
biological_process GO:0009846 pollen germination
biological_process GO:0006531 aspartate metabolic process
cellular_component GO:0005829 cytosol
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005759 mitochondrial matrix
cellular_component GO:0016020 membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0000932 P-body
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005657 replication fork
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005694 chromosome
cellular_component GO:0017177 glucosidase II complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
cellular_component GO:0000785 chromatin
molecular_function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity
molecular_function GO:0031072 heat shock protein binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0008236 serine-type peptidase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0042803 protein homodimerization activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0003678 DNA helicase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0008173 RNA methyltransferase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0080130 L-phenylalanine:2-oxoglutarate aminotransferase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005215 transporter activity
molecular_function GO:0004558 alpha-1,4-glucosidase activity
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0032450 maltose alpha-glucosidase activity
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0005507 copper ion binding
molecular_function GO:0005096 GTPase activator activity
molecular_function GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity
molecular_function GO:0016817 hydrolase activity, acting on acid anhydrides
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo102690.90Barchart | Table
Spo157310.84Barchart | Table
Spo003410.83Barchart | Table
Spo081240.83Barchart | Table
Spo060020.82Barchart | Table
Spo101650.81Barchart | Table
Spo222910.79Barchart | Table
Spo197480.78Barchart | Table
Spo092330.77Barchart | Table
Spo257480.77Barchart | Table
Spo249310.77Barchart | Table
Spo035270.75Barchart | Table
Spo022390.75Barchart | Table
Spo013140.74Barchart | Table
Spo037390.74Barchart | Table
Spo150070.74Barchart | Table
Spo087650.73Barchart | Table
Spo095730.73Barchart | Table
Spo164600.73Barchart | Table
Spo245030.72Barchart | Table
Spo137800.72Barchart | Table
Spo018060.72Barchart | Table
Spo200530.72Barchart | Table
Spo003750.72Barchart | Table
Spo220230.72Barchart | Table
Spo200520.71Barchart | Table
Spo253610.71Barchart | Table
Spo188400.71Barchart | Table
Spo111800.71Barchart | Table
Spo168570.71Barchart | Table
Spo050070.70Barchart | Table
Spo065200.70Barchart | Table
Spo011100.70Barchart | Table
Spo189070.70Barchart | Table
Spo191950.70Barchart | Table
Spo203260.69Barchart | Table
Spo168730.69Barchart | Table
Spo247850.69Barchart | Table
Spo245730.69Barchart | Table
Spo143800.69Barchart | Table
Spo136210.69Barchart | Table
Spo109810.68Barchart | Table
Spo024770.68Barchart | Table
Spo031050.68Barchart | Table
Spo180960.68Barchart | Table
Spo193740.68Barchart | Table
Spo217640.68Barchart | Table
Spo237130.68Barchart | Table
Spo105530.67Barchart | Table
Spo032210.67Barchart | Table
Spo234160.67Barchart | Table
Spo163670.67Barchart | Table
Spo212890.66Barchart | Table
Spo025180.66Barchart | Table
Spo185050.66Barchart | Table
Spo159610.66Barchart | Table
Spo156150.66Barchart | Table
Spo121530.66Barchart | Table
Spo236900.66Barchart | Table
Spo002640.66Barchart | Table
Spo079620.66Barchart | Table
Spo044300.66Barchart | Table
Spo180400.66Barchart | Table
Spo033050.66Barchart | Table
Spo226750.66Barchart | Table
Spo232920.66Barchart | Table
Spo002630.65Barchart | Table
Spo148420.65Barchart | Table
Spo179130.65Barchart | Table
Spo227120.65Barchart | Table
Spo176210.65Barchart | Table
Spo175130.65Barchart | Table