Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGATGTTAGCCAAAACCCTAGTTTTCACCTCTCAAAACCTCCCCATAAGCTAAAAACTAAACCCACCAAAAGAACAACAAGATCTAGAAACAAGAATAACAACACGGCTACCACGGCCGCCTCCACCACCAACAACAACCACAACAAGCCACTCAAGGTGGTTCACATCTCTAACCCTATGAAGTTCCAAGTCGCCGCAGCTGGGTTTCGAGCCCTTGTCCAAGGGCTCACCGGCCGCGACGCCGTAATCGACTGGCCTGAGGAACACCAACCCGACTTCGAAGTTGTGGCGGCTGCTGCTGGCGTTGCTGAAGATGATACTGCTGAGGATGATAGTAGTGCTAACAGTACGGATGATCAGGTAAATGATCACCACCATCATCAGCATCGTGATGAGGTTGTTAATATGTCTGCCTGTTTCGGGCCGTCCGATCATTATAATCTGATGAGCTTTGATTATTACGGGGCCCACTTTAATGGTGACGTCATTGTGGATGACGATGTTGAACAAAGCATGGTTGTTATGGATGATTTCCGCGCTTTTTTGGGGGATGTTAATCAATCATTACTTCATTATTAA mRNA sequence
ATGTCAGATGTTAGCCAAAACCCTAGTTTTCACCTCTCAAAACCTCCCCATAAGCTAAAAACTAAACCCACCAAAAGAACAACAAGATCTAGAAACAAGAATAACAACACGGCTACCACGGCCGCCTCCACCACCAACAACAACCACAACAAGCCACTCAAGGTGGTTCACATCTCTAACCCTATGAAGTTCCAAGTCGCCGCAGCTGGGTTTCGAGCCCTTGTCCAAGGGCTCACCGGCCGCGACGCCGTAATCGACTGGCCTGAGGAACACCAACCCGACTTCGAAGTTGTGGCGGCTGCTGCTGGCGTTGCTGAAGATGATACTGCTGAGGATGATAGTAGTGCTAACAGTACGGATGATCAGGTAAATGATCACCACCATCATCAGCATCGTGATGAGGTTGTTAATATGTCTGCCTGTTTCGGGCCGTCCGATCATTATAATCTGATGAGCTTTGATTATTACGGGGCCCACTTTAATGGTGACGTCATTGTGGATGACGATGTTGAACAAAGCATGGTTGTTATGGATGATTTCCGCGCTTTTTTGGGGGATGTTAATCAATCATTACTTCATTATTAA Coding sequence (CDS)
ATGTCAGATGTTAGCCAAAACCCTAGTTTTCACCTCTCAAAACCTCCCCATAAGCTAAAAACTAAACCCACCAAAAGAACAACAAGATCTAGAAACAAGAATAACAACACGGCTACCACGGCCGCCTCCACCACCAACAACAACCACAACAAGCCACTCAAGGTGGTTCACATCTCTAACCCTATGAAGTTCCAAGTCGCCGCAGCTGGGTTTCGAGCCCTTGTCCAAGGGCTCACCGGCCGCGACGCCGTAATCGACTGGCCTGAGGAACACCAACCCGACTTCGAAGTTGTGGCGGCTGCTGCTGGCGTTGCTGAAGATGATACTGCTGAGGATGATAGTAGTGCTAACAGTACGGATGATCAGGTAAATGATCACCACCATCATCAGCATCGTGATGAGGTTGTTAATATGTCTGCCTGTTTCGGGCCGTCCGATCATTATAATCTGATGAGCTTTGATTATTACGGGGCCCACTTTAATGGTGACGTCATTGTGGATGACGATGTTGAACAAAGCATGGTTGTTATGGATGATTTCCGCGCTTTTTTGGGGGATGTTAATCAATCATTACTTCATTATTAA Protein sequence
MSDVSQNPSFHLSKPPHKLKTKPTKRTTRSRNKNNNTATTAASTTNNNHNKPLKVVHISNPMKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDDSSANSTDDQVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQSMVVMDDFRAFLGDVNQSLLHY
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name Unique Name Type
Spo28189 Spo28189 gene
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Type
Spo28189.1 Spo28189.1-protein polypeptide
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Type
Spo28189.1.exon.1 Spo28189.1.exon.1 exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Type
Spo28189.1.CDS.1 Spo28189.1.CDS.1 CDS
Homology
BLAST of Spo28189.1 vs. NCBI nr
Match:
gi|902170544|gb|KNA07853.1| (hypothetical protein SOVF_167920 [Spinacia oleracea])
HSP 1 Score: 383.6 bits (984), Expect = 2.000e-103
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1
Query: 1 MSDVSQNPSFHLSKPPHKLKTKPTKRTTRSRNKNNNTATTAASTTNNNHNKPLKVVHISN 60 MSDVSQNPSFHLSKPPHKLKTKPTKRTTRSRNKNNNTATTAASTTNNNHNKPLKVVHISN Sbjct: 1 MSDVSQNPSFHLSKPPHKLKTKPTKRTTRSRNKNNNTATTAASTTNNNHNKPLKVVHISN 60 Query: 61 PMKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDDSSANSTD 120 PMKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDDSSANSTD Sbjct: 61 PMKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDDSSANSTD 120 Query: 121 DQVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQSMVVMDDF 180 DQVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQSMVVMDDF Sbjct: 121 DQVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQSMVVMDDF 180 Query: 181 RAFLGDVNQSLLHY 195 RAFLGDVNQSLLHY Sbjct: 181 RAFLGDVNQSLLHY 194
BLAST of Spo28189.1 vs. NCBI nr
Match:
gi|731324534|ref|XP_010673020.1| (PREDICTED: uncharacterized protein LOC104889490 [Beta vulgaris subsp. vulgaris])
HSP 1 Score: 136.3 bits (342), Expect = 5.500e-29
Identity = 93/199 (46.73%), Postives = 117/199 (58.79%), Query Frame = 1
Query: 1 MSDVSQNPSFHLSKPPHKL-------KTKPTKRTTRSRNKNNNTATTAASTTNNNHNKPL 60 MS+V+QNP+FHLSKPPHKL K KPT + + NNNT+T+ + TN N NKPL Sbjct: 1 MSEVTQNPNFHLSKPPHKLTNKQTMFKNKPTTKRSGKPKYNNNTSTSTNTNTNTN-NKPL 60 Query: 61 KVVHISNPMKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDD 120 KVVHISNPMKFQ AA FR LVQGLTGRDAV WP+E + + V A +D Sbjct: 61 KVVHISNPMKFQATAAEFRDLVQGLTGRDAVFKWPDEQLYEVQQVNAEI---------ED 120 Query: 121 SSANSTDDQVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQS 180 DD + H Q + V++SACFGP+DH L +DY+ VD E Sbjct: 121 CGVTINDDLI---LHEQVVHKEVDLSACFGPNDH--LGGYDYF---------VD---EHH 172 Query: 181 MVVMDDFRAFLGDVNQSLL 193 +VVM+D RAF+G + L+ Sbjct: 181 LVVMEDLRAFIGADDDDLM 172
BLAST of Spo28189.1 vs. NCBI nr
Match:
gi|870864049|gb|KMT15182.1| (hypothetical protein BVRB_3g062950 [Beta vulgaris subsp. vulgaris])
HSP 1 Score: 74.7 bits (182), Expect = 2.000e-10
Identity = 53/131 (40.46%), Postives = 69/131 (52.67%), Query Frame = 1
Query: 62 MKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDDSSANSTDD 121 MKFQ AA FR LVQGLTGRDAV WP+E + + V A +D DD Sbjct: 1 MKFQATAAEFRDLVQGLTGRDAVFKWPDEQLYEVQQVNAEI---------EDCGVTINDD 60 Query: 122 QVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQSMVVMDDFR 181 + H Q + V++SACFGP+DH L +DY+ VD E +VVM+D R Sbjct: 61 LI---LHEQVVHKEVDLSACFGPNDH--LGGYDYF---------VD---EHHLVVMEDLR 105 Query: 182 AFLGDVNQSLL 193 AF+G + L+ Sbjct: 121 AFIGADDDDLM 105
BLAST of Spo28189.1 vs. UniProtKB/TrEMBL
Match:
A0A0K9QME1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_167920 PE=4 SV=1)
HSP 1 Score: 383.6 bits (984), Expect = 1.400e-103
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1
Query: 1 MSDVSQNPSFHLSKPPHKLKTKPTKRTTRSRNKNNNTATTAASTTNNNHNKPLKVVHISN 60 MSDVSQNPSFHLSKPPHKLKTKPTKRTTRSRNKNNNTATTAASTTNNNHNKPLKVVHISN Sbjct: 1 MSDVSQNPSFHLSKPPHKLKTKPTKRTTRSRNKNNNTATTAASTTNNNHNKPLKVVHISN 60 Query: 61 PMKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDDSSANSTD 120 PMKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDDSSANSTD Sbjct: 61 PMKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDDSSANSTD 120 Query: 121 DQVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQSMVVMDDF 180 DQVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQSMVVMDDF Sbjct: 121 DQVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQSMVVMDDF 180 Query: 181 RAFLGDVNQSLLHY 195 RAFLGDVNQSLLHY Sbjct: 181 RAFLGDVNQSLLHY 194
BLAST of Spo28189.1 vs. UniProtKB/TrEMBL
Match:
A0A0J8CNT4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062950 PE=4 SV=1)
HSP 1 Score: 74.7 bits (182), Expect = 1.400e-10
Identity = 53/131 (40.46%), Postives = 69/131 (52.67%), Query Frame = 1
Query: 62 MKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDDSSANSTDD 121 MKFQ AA FR LVQGLTGRDAV WP+E + + V A +D DD Sbjct: 1 MKFQATAAEFRDLVQGLTGRDAVFKWPDEQLYEVQQVNAEI---------EDCGVTINDD 60 Query: 122 QVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQSMVVMDDFR 181 + H Q + V++SACFGP+DH L +DY+ VD E +VVM+D R Sbjct: 61 LI---LHEQVVHKEVDLSACFGPNDH--LGGYDYF---------VD---EHHLVVMEDLR 105 Query: 182 AFLGDVNQSLL 193 AF+G + L+ Sbjct: 121 AFIGADDDDLM 105
The following BLAST results are available for this feature:
BLAST of Spo28189.1 vs. NCBI nr
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. NCBI nr )
Total hits: 3
A T G T C A G A T G T T A G C C A A A A C C C T A G T T T T C A C C T C T C A A A A C C T C C C C A T A A G C T A A A A A C T A A A C C C A C C A A A A G A A C A A C A A G A T C T A G A A A C A A G A A T A A C A A C A C G G C T A C C A C G G C C G C C T C C A C C A C C A A C A A C A A C C A C A A C A A G C C A C T C A A G G T G G T T C A C A T C T C T A A C C C T A T G A A G T T C C A A G T C G C C G C A G C T G G G T T T C G A G C C C T T G T C C A A G G G C T C A C C G G C C G C G A C G C C G T A A T C G A C T G G C C T G A G G A A C A C C A A C C C G A C T T C G A A G T T G T G G C G G C T G C T G C T G G C G T T G C T G A A G A T G A T A C T G C T G A G G A T G A T A G T A G T G C T A A C A G T A C G G A T G A T C A G G T A A A T G A T C A C C A C C A T C A T C A G C A T C G T G A T G A G G T T G T T A A T A T G T C T G C C T G T T T C G G G C C G T C C G A T C A T T A T A A T C T G A T G A G C T T T G A T T A T T A C G G G G C C C A C T T T A A T G G T G A C G T C A T T G T G G A T G A C G A T G T T G A A C A A A G C A T G G T T G T T A T G G A T G A T T T C C G C G C T T T T T T G G G G G A T G T T A A T C A A T C A T T A C T T C A T T A T T A A 50 100 150 200 250 300 350 400 450 500 550 Expect = 2.00e-103 / Id = 100.00 Expect = 5.50e-29 / Id = 46.73 Expect = 2.00e-10 / Id = 40.46 Sequence KNA07853.1 XP_010673020.1 KMT15182.1
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BLAST of Spo28189.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL )
Total hits: 2
A T G T C A G A T G T T A G C C A A A A C C C T A G T T T T C A C C T C T C A A A A C C T C C C C A T A A G C T A A A A A C T A A A C C C A C C A A A A G A A C A A C A A G A T C T A G A A A C A A G A A T A A C A A C A C G G C T A C C A C G G C C G C C T C C A C C A C C A A C A A C A A C C A C A A C A A G C C A C T C A A G G T G G T T C A C A T C T C T A A C C C T A T G A A G T T C C A A G T C G C C G C A G C T G G G T T T C G A G C C C T T G T C C A A G G G C T C A C C G G C C G C G A C G C C G T A A T C G A C T G G C C T G A G G A A C A C C A A C C C G A C T T C G A A G T T G T G G C G G C T G C T G C T G G C G T T G C T G A A G A T G A T A C T G C T G A G G A T G A T A G T A G T G C T A A C A G T A C G G A T G A T C A G G T A A A T G A T C A C C A C C A T C A T C A G C A T C G T G A T G A G G T T G T T A A T A T G T C T G C C T G T T T C G G G C C G T C C G A T C A T T A T A A T C T G A T G A G C T T T G A T T A T T A C G G G G C C C A C T T T A A T G G T G A C G T C A T T G T G G A T G A C G A T G T T G A A C A A A G C A T G G T T G T T A T G G A T G A T T T C C G C G C T T T T T T G G G G G A T G T T A A T C A A T C A T T A C T T C A T T A T T A A 50 100 150 200 250 300 350 400 450 500 550 Expect = 1.40e-103 / Id = 100.00 Expect = 1.40e-10 / Id = 40.46 Sequence A0A0K9QME1_SPIOL A0A0J8CNT4_BETVU
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BLAST of Spo28189.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. ExPASy SwissProt )
Total hits: 0
A T G T C A G A T G T T A G C C A A A A C C C T A G T T T T C A C C T C T C A A A A C C T C C C C A T A A G C T A A A A A C T A A A C C C A C C A A A A G A A C A A C A A G A T C T A G A A A C A A G A A T A A C A A C A C G G C T A C C A C G G C C G C C T C C A C C A C C A A C A A C A A C C A C A A C A A G C C A C T C A A G G T G G T T C A C A T C T C T A A C C C T A T G A A G T T C C A A G T C G C C G C A G C T G G G T T T C G A G C C C T T G T C C A A G G G C T C A C C G G C C G C G A C G C C G T A A T C G A C T G G C C T G A G G A A C A C C A A C C C G A C T T C G A A G T T G T G G C G G C T G C T G C T G G C G T T G C T G A A G A T G A T A C T G C T G A G G A T G A T A G T A G T G C T A A C A G T A C G G A T G A T C A G G T A A A T G A T C A C C A C C A T C A T C A G C A T C G T G A T G A G G T T G T T A A T A T G T C T G C C T G T T T C G G G C C G T C C G A T C A T T A T A A T C T G A T G A G C T T T G A T T A T T A C G G G G C C C A C T T T A A T G G T G A C G T C A T T G T G G A T G A C G A T G T T G A A C A A A G C A T G G T T G T T A T G G A T G A T T T C C G C G C T T T T T T G G G G G A T G T T A A T C A A T C A T T A C T T C A T T A T T A A 50 100 150 200 250 300 350 400 450 500 550 Sequence
Match Name E-value Identity Description
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BLAST of Spo28189.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. TAIR )
Total hits: 0
A T G T C A G A T G T T A G C C A A A A C C C T A G T T T T C A C C T C T C A A A A C C T C C C C A T A A G C T A A A A A C T A A A C C C A C C A A A A G A A C A A C A A G A T C T A G A A A C A A G A A T A A C A A C A C G G C T A C C A C G G C C G C C T C C A C C A C C A A C A A C A A C C A C A A C A A G C C A C T C A A G G T G G T T C A C A T C T C T A A C C C T A T G A A G T T C C A A G T C G C C G C A G C T G G G T T T C G A G C C C T T G T C C A A G G G C T C A C C G G C C G C G A C G C C G T A A T C G A C T G G C C T G A G G A A C A C C A A C C C G A C T T C G A A G T T G T G G C G G C T G C T G C T G G C G T T G C T G A A G A T G A T A C T G C T G A G G A T G A T A G T A G T G C T A A C A G T A C G G A T G A T C A G G T A A A T G A T C A C C A C C A T C A T C A G C A T C G T G A T G A G G T T G T T A A T A T G T C T G C C T G T T T C G G G C C G T C C G A T C A T T A T A A T C T G A T G A G C T T T G A T T A T T A C G G G G C C C A C T T T A A T G G T G A C G T C A T T G T G G A T G A C G A T G T T G A A C A A A G C A T G G T T G T T A T G G A T G A T T T C C G C G C T T T T T T G G G G G A T G T T A A T C A A T C A T T A C T T C A T T A T T A A 50 100 150 200 250 300 350 400 450 500 550 Sequence
Match Name E-value Identity Description
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