Spo02885.1 (mRNA)

Overview
NameSpo02885.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionATP-dependent RNA helicase, putative
LocationSpoScf_00326 : 140621 .. 146951 (+)
Sequence length1139
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATAGTCTAACATCAGATATGGCTATTATATCCCGCGAAGGTTCTGCTTTCGCATGGGTAGTTCGTGAAAAATCAAAGCAAGAACAAGTCAGACAGTTTTTTTTGGAACTTGCTAGTTCTAAACTTGATGATATCCTTGGTGCAGAGAAGACAGAAAAACAGGTATATATTTGGATATATTAAACAACGCCAATATCTTATAAATTTCATTTGGGCAGGTTGCTTTGTTTCATTTTGCATCCACTTTCAGGTAGATACGTATACAGTTAATTTGGTGAATATGGGGAAATTAATTTCAAGTAAGACGCATAATTTACTCAGCGTTTTTAGAAGGTTGAGGCAGTAAGTGAAATTACAAAGATCCAAACCTGTTTTTAATCTGCTGGCACTGGCAAAACCATGTTAGTTCAGAATTTGGTTAAGTTGCTTAGGAAAATTTATAGGAAAAGAAATGTTTGTGTGACTGCCCCAACAGGGGTTGTGGCCTGTGCACTTGGGGGTCAGACCCTGCACTCATTTACTGGTGTTGGCCTTGCTCAGGCTGATGCTGGGACTTTGTTGTCTAGGGTTTTGGATAACCGTACGGTTATTAATTAAAAGGTGGAAGACGGTTAAAGCATTGGTGATTGATGAGATTAGTATGGTAGAAGCTAGGGGAGCTTTTTGATTAGCTTGAATACATTTCTAGAAGTATTAGAGAGTTAGATGACCCGTGGGGCGGTATCCAGCTTGTAGTTAGTGGCGATTTCTTGAAGCTTCCACCAGTGAGCGTTGGTAAGAGTTTTGATAATCGAAAGGAATTTGCGTTCGAGCATATTCTTGGGATAGTTCGTTTCAGTTAGAAGTGGGTCTGAAAACATTCTTCAGGCAATCTGACCCAGAACATATTAAACTGCTTCAGGGTATAAGAACATGGGAGTTAAATGCTGAAGGTCTTGACCTGCTTTAGCAATGTCGTTGTTTCAAAGAGCCTGATGAGACGGTTGTGATATTATTTACAAGAATAGCAGATGTTAACCGAGTGAATGATATGAGATTGAAAGGGTTGGGAGAAGAAACTATTGTTTATGAAGACTTTGATAAAGGGGAGAAACCTTGGATTGATCAATTAAATCGTGGGATAGCGCGCACCCACTAAACTTCAGCTTTATGTAGGTGCAAGGTTGATGCCATTAAAGTAAGTGTGAAGGGCATGTTGGTGAATGGTGCTACTGGTACAATTACAAGTTTTAAAAAGTCACGTAAGAGCGACGTTGCGAAGATATGTGAACATAAACCGTTGCCATTTTGTAATTTTAGTGTGTTAATATGAAGTTAAGAGATGTATGTAATATTTATACTCCGTAGTTCTTTCTTTTTTTCGAGGATGATAAATTATTGTATATTATTTTTAAGTTATGAGACAGTGAGACGCTTATTTGATATGATAGGAATGGAATTTGATTGTATATATTAATTATTTCAATTGTTAAATTAGCATAATGGTTGCTTTCATTTTCTATTACAGGTATTTTATCAACTAAAAAAACCTTCAGAAAAAAGAGCCGACAAAAAAATATAGAATTCGTTCAAAAATACAATAGGTTTTTAGTTAAATGCTACTAATTTTAATTCATACTACATTGGATGTTCAGTGCACTAAAGTTTTCGTCATTACAAAGGATTTGACAGCGCTTATATATTGAATGCTGCTAAATGTGGCAACATCAACAACGCTTATTAAAAGCGCTATTATGTTTTTAACAGCGCTAGTGATTCACAGCGCTTAATAAGCGCTGTGTTTAAATGAAAAAAGCGCTATTAAAAGCTTGTTTTGTTGTAGTATGTGTTGGTTTGTCAAGATGTGATCAAAATGTACAGAAAAGGCCAAACTCAAGCCAACTACATGATGAAGCTTGACCTCAAAAAGGCTTATAATACAGTTGAATAGGACTTCATTGCTGAGATTTTGTAGGATCTTGGGTTCCCAAACCACTTTATTCAGTTGATCATGACATGCTTGACTACCACCCAATACTCAATCTTGATCAATGGCTCACCCACAAAGTTGATTATCCAAGAAGGGGGTTAAGACAAGTGGATCCTCTGTCTCCCCTTCTCTTCCCCCTTTGCATGGAGTACTTTTATAGGGCCATGAAATCCATAGGGGACCACCCTAACTTCAGATTTCATTCCAGGTGTAGAAGTATGAATCTCAAACCTTTGTTTTGCTGATGATCTTCTAATGTTGTGCAAGGGTGAAAAACAAATTGTGCAACTTATTTTGCAAGGTTTTTAGTGTTTCTCTGAAAGTACTGACCTAGAGCACTAGTAGAAAAAACATCATTAGTAACCCCCTATTAATAACTGACTTTGTATTGCCAGTTATAAATTGTCCACTAATAATGGGCTTATTTGCCGTGAGTTACAAATAAATTGGTTCAAGATAATTTTACCAAGCATTAGTAACCTGAAAAGCTAATACCCGTTACGATATCTGGTCGAACTTTTTTGACCTTATTACCCGTAACTAGCAAAGTTAATGTTACAAGTATGCCTGTTAATAATTCCTCTCAAATATGTTCCAAACCCCAAAACCGCTATGTTCCATCTCTCAAATATCTGAAATCTCAATCCCTCCTCGTTAGTTTCTATGCCCCAAAGTCATCTGCCCTTTTTTTCTATTCGCTGCCATTGCTCCTCCAAAATCCCCAAATTTTCCGTTATGATTCTTTCTCAACAGCTCAATAACAACAACATATCTGGCGTTCTTTGCCTTCCTTGATCGTCTTCTTATGGTAATCTCTCTACCCTAACATTTTATTGCCAATTTTTTGATTAAATTTACTATCGATCAATTTGTGAATTCTTTTATGAATTAGGTTCTTGAAACGATTAGGTTATCAAAATTTGCAAATGAACTGCTTTTTTGTGATTTCTCATATGAAAATGCAAATTTGTTTTTTTATTTGTAAAATCTTTAGGTTTCTTTTGTAGGACATGGGAAGGTGTGAAGTGTTCACTATTGAGCATGATAACCGCGGCCGGCTCCTATTCCGTCGGCACGCGGAAGTGAGAATTGGAAGCATTCTACTTTTAGTTTCCGTAGTTATAACTGTTTGCGATAGGTTATGATGTTATTTTTAGCACTGGGAATCTGGGATAGAGATCCACCTATTCCAAGTTCTCATCTTGCTTTTTGTTGCGATTTCAATTTTGTTCAACAGCTAAGGATGCTAGGTGCACACTAGGTGTTCGATAAAATGCCAATATCAATTGGTCGATTCTCTGCATTTTCAGGTAGAGTTTATGCGCCATATTACTTAGCACTTAGCTGATTGTTCTAGATAAATAGACAGTAAAAGCTAGGCAAAAAGATGGATCAAGCTAATGGAATGAATCAATTTGTGGTGTGAGAATAACTGTCAATAGAACTTACTTCCTACCTTTCATAACACTTATAACAAGAAATTTTACGCTATTCATATACTCATAATAATTTCGGCTACATGTTTCTACTACAGAGTACTCCATATACATGTGAACATAACAAAATTGATCCTGATATACTGATCTTTACACTTTTCAATTGAACTTTATGCATTCTGTTTATTTGATACAGAAGAGTGTCTTAGTCGTTTATCAAGTAGGATGCTTAATTTTTTGCCCCTTTCAGTTATTTCTATTTTTACCTCTTCAAATCTTTCTATTGAGCTCTATCAATCCCTCACCAAGATTGAGCACTCCCATTCTTTGATTCTTGGGGCCATGATCCTGAACATATTGAAAGATGCCTCACAAAGATTTGATGATGCGAGAATTATGTATCACACTATTCACAATTTTACCCTCTGGGTACAACTGAAGTCATAGAGTAGGATTTTCATTTTAAGTAGTTTATTTTTTTTCTTACTTTTGATAAATGTTAATTTTTTATAGTTAAGAACAATCCTTGATGCTTCTCTTGTATTTTATATTCGAGGTTTGAGTCTACAGTTGTTATATATGCTGGGAGAACAAAATCTATTGTGTTTGTAGACTCTGTACTTGAATTATTTAATTAGATCAGAGTGATGTCTTTGAAGTTTCTAGATGATATAGATTAATGTTTGCACCATCTTTTATATACCTTTGTTGTATACCATCTGTTGCATACCATCTGACAGAGGCATATCTTTTATATGGCCTGGGTAGGCTCGCCCCCCATTACATTGTGTATTTTTAGTTTCGGCCCCCTCCCTCCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGCCATTTTTAGTAACTTATCAACCCCACCATCTAATTAAATAATATATCTACACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTAAAATTTGAGTATAATGGTATATGTTATATAGTATATTGCTTAATTTTTTGTACTGGACCCCCTCGTAAACTTGTTCAACCTTATTGCCACTGCCATCTAATACATTTAACCTTATTGACAATTAGTAAGAATTCTTCTACTAGCTAATTAGGTTCATTCGTTAAACCAGCATCATGTCAAAATTATCTTATGTATCTGCATTTGTTTAACTGATGCAATTTGCAGAATAGTTTAACTAACTTTGATTTTATACTTGACAGAAGTAGTATGGCCGATGAACAAAATGTGCCATCTAAGAAGAGGGTAGGGGTCCATCAATGAGGGTAGGGAATCAAGTACACCTATGTTCCTCGAGTTTAATGATTTTGACTTGTGTAGTGCGGATTGGGAAGCTACCTACAGGAAACAAATTGACGCTTGTGCTAAGAGAATTGATATAAATATGGACGAATATTCGAAGATTGATAAAGGTATGAATTTATGCATCTTAACTCTCATTGTTGGTTGTTTCTGTTGGGTTAGGTTCTTTGTTTTTTGAAGAGGAAAATTGTGGGGCATCAGTTAATCTCTCAAAATTACATTTGACTCCAATCGTATCCTGCTTTTGACTGGAGCAAATGCACTGGTTTTCCTTTATACACGTCTCTCTGTATTGGAATCTTTATGGACAATGGGTTAGAGGTATTTGAATATGAGTCTGTTTGCATAATCTGTGCACTTTTTCCTACTGTATCATTTGATCCTGGAAGTTGGCAGTGCTATCATCTGACACCTAATATAACTGAGTACCTATGCTCCTTGTTTGCCCTCTCTTGGATAATCACCCCTGTTTGATACTGCAGGTGCTATACGTTTATGGTGGTCTCTCTCATAATATTCAGACAATTGATCAGGTTCTTGTCTAATGTAGTTTTTTCATTTTAATTTGTGATATATTCTGGTGTTGTGGCCATTTATTATAACATTGCGTTTTTTTATAAAACTGAAAAGCTACTTGTGGTTATTGGCTTTGTTTTTGTTTGTTATCGAGGTCTCAGGACTTTATAATATTAGGAAAACTAATCTTTAGAAATTACAAACTTCGCACCTGCTTCATTTCAGTAGTACAAAGAGTGTCTTCAGACTAATACTCTTGCATAGAATAACCAGGTCTAGTTCTGATGTTTGACACAGTTAATGGTTTATTACTAAGGAATAATAAGAATGAACAAAAATTAAATACTAATCTAATGTTGGGATAGATTACCTAGAATTATTTTATCAAAACATGTAGAACACTGAACACGTGGTAATGTGCTGAACTAAATTAATTTCCCTTGCATTACTATTGATTGAGATATTATTGACAGTGAACATGAATGAAGAACGGTTGATACATGCTAGTAGAGATGCATTGCTAAGAGTAAGGACACATGAAGTTAAGGTACTTATATAGTAATTTAATTTATGTACCATTCTAAGAATAGTAAAGGAAACAGCAAGGCAGGAATTCCGAAAGTCCAGGAGCTTAAGGCGAGTTGCGCTGCCTAGTATGTTTTTCAGTTTACTCACTATTTGTTGTATTCTTTTGGTTAATCACTTCAAGATATTGTGCCACTTATAAATTGATGAAATTTATTGTTTTTTTCCTTTGAAGATAAATTTATACAGAGAACAAAGAAGCTATACCAGGAATACTATGAAGAGGTTTTAACTAGTTTTGTTTGCAGATTGTGTGAGAAACCACAACCACGGTAGAGAAATGTAGTCGTGCTTATATTTTTTTTGTTCTACTTTATTGTTAAAGTTTTATATAATTAGGAGTTGCTATTTAGAATTTTGATGAAAAAATAAGTTTGTGATACCTCATATGTACCTCTTTATTTACTCCAATGTTATACATTCAGATTATTTTATAAATACCATTCACTTTTAT

mRNA sequence

ATGCATAGTCTAACATCAGATATGGCTATTATATCCCGCGAAGGTTCTGCTTTCGCATGGGTAGTTCGTGAAAAATCAAAGCAAGAACAAGTCAGACAGTTTTTTTTGGAACTTGCTAGTTCTAAACTTGATGATATCCTTGGTGCAGAGAAGACAGAAAAACAGGTAGATACGTATACAGTTAATTTGGTGAATATGGGGAAATTAATTTCAAGTAAGACGCATAATTTACTCAGCGTTTTTAGAAGGTTGAGGCACTCAATAACAACAACATATCTGGCGTTCTTTGCCTTCCTTGATCGTCTTCTTATGAAGTAGTATGGCCGATGAACAAAATGTGCCATCTAAGAAGAGGGTAGGGGTCCATCAATGAGGGTAGGGAATCAAGTACACCTATGTTCCTCGAGTTTAATGATTTTGACTTGTGTAGTGCGGATTGGGAAGCTACCTACAGGAAACAAATTGACGCTTGTGCTAAGAGAATTGATATAAATATGGACGAATATTCGAAGATTGATAAAGGTGCTATACGTTTATGGTGGTCTCTCTCATAATATTCAGACAATTGATCAGTGAACATGAATGAAGAACGGTTGATACATGCTAGTAGAGATGCATTGCTAAGAGTAAGGACACATGAAGTTAAGGTACTTATATAGTAATTTAATTTATGTACCATTCTAAGAATAGTAAAGGAAACAGCAAGGCAGGAATTCCGAAAGTCCAGGAGCTTAAGGCGAGTTGCGCTGCCTAGTATGTTTTTCAGTTTACTCACTATTTGTTGTATTCTTTTGGTTAATCACTTCAAGATATTGTGCCACTTATAAATTGATGAAATTTATTGTTTTTTTCCTTTGAAGATAAATTTATACAGAGAACAAAGAAGCTATACCAGGAATACTATGAAGAGGTTTTAACTAGTTTTGTTTGCAGATTGTGTGAGAAACCACAACCACGGTAGAGAAATGTAGTCGTGCTTATATTTTTTTTGTTCTACTTTATTGTTAAAGTTTTATATAATTAGGAGTTGCTATTTAGAATTTTGATGAAAAAATAAGTTTGTGATACCTCATATGTACCTCTTTATTTACTCCAATGTTATACATTCAGATTATTTTATAAATACCATTCACTTTTAT

Coding sequence (CDS)

ATGCATAGTCTAACATCAGATATGGCTATTATATCCCGCGAAGGTTCTGCTTTCGCATGGGTAGTTCGTGAAAAATCAAAGCAAGAACAAGTCAGACAGTTTTTTTTGGAACTTGCTAGTTCTAAACTTGATGATATCCTTGGTGCAGAGAAGACAGAAAAACAGGTAGATACGTATACAGTTAATTTGGTGAATATGGGGAAATTAATTTCAAGTAAGACGCATAATTTACTCAGCGTTTTTAGAAGGTTGAGGCACTCAATAACAACAACATATCTGGCGTTCTTTGCCTTCCTTGATCGTCTTCTTATGAAGTAG

Protein sequence

MHSLTSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLVNMGKLISSKTHNLLSVFRRLRHSITTTYLAFFAFLDRLLMK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo02885Spo02885gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo02885.1Spo02885.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo02885.1.exon.1Spo02885.1.exon.1exon
Spo02885.1.exon.2Spo02885.1.exon.2exon
Spo02885.1.exon.3Spo02885.1.exon.3exon
Spo02885.1.exon.4Spo02885.1.exon.4exon
Spo02885.1.exon.5Spo02885.1.exon.5exon
Spo02885.1.exon.6Spo02885.1.exon.6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo02885.1.CDS.1Spo02885.1.CDS.1CDS
Spo02885.1.CDS.2Spo02885.1.CDS.2CDS
Spo02885.1.CDS.3Spo02885.1.CDS.3CDS
Spo02885.1.CDS.4Spo02885.1.CDS.4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo02885.1.utr3p.1Spo02885.1.utr3p.1three_prime_UTR
Spo02885.1.utr3p.2Spo02885.1.utr3p.2three_prime_UTR
Spo02885.1.utr3p.3Spo02885.1.utr3p.3three_prime_UTR


Homology
[Close]
BLAST of Spo02885.1 vs. NCBI nr
Match: gi|1021525019|ref|XP_016205896.1| (PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like [Arachis ipaensis])

HSP 1 Score: 64.3 bits (155), Expect = 1.400e-7
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1 

		  

Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAIISR+GS     +REK    + RQ F ELA SKL DILG EKT +Q+D  T  + 
Sbjct: 85  TSDMAIISRKGSTLVREIREKQSSNKSRQRFWELAGSKLGDILGVEKTAEQIDADTATVG 144

Query: 65  NMGKL 70
             G++
Sbjct: 145 EQGEI 149
[Close]
BLAST of Spo02885.1 vs. NCBI nr
Match: gi|1012219723|ref|XP_015935424.1| (PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Arachis duranensis])

HSP 1 Score: 64.3 bits (155), Expect = 1.400e-7
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1 

		  

Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAIISR+GS     +REK    + RQ F ELA SKL DILG EKT +Q+D  T  + 
Sbjct: 511 TSDMAIISRKGSTLVREIREKQSSNKSRQRFWELAGSKLGDILGVEKTAEQIDADTATVG 570

Query: 65  NMGKL 70
             G++
Sbjct: 571 EQGEI 575
[Close]
BLAST of Spo02885.1 vs. NCBI nr
Match: gi|1012186616|ref|XP_015969605.1| (PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like [Arachis duranensis])

HSP 1 Score: 64.3 bits (155), Expect = 1.400e-7
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1 

		  

Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAIISR+GS     +REK    + RQ F ELA SKL DILG EKT +Q+D  T  + 
Sbjct: 384 TSDMAIISRKGSTLVKEIREKQSSNKSRQRFWELAGSKLGDILGVEKTAEQIDADTATVG 443

Query: 65  NMGKL 70
             G++
Sbjct: 444 EQGEI 448
[Close]
BLAST of Spo02885.1 vs. NCBI nr
Match: gi|1021557481|ref|XP_016170061.1| (PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Arachis ipaensis])

HSP 1 Score: 64.3 bits (155), Expect = 1.400e-7
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1 

		  

Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAIISR+GS     +REK    + RQ F ELA SKL DILG EKT +Q+D  T  + 
Sbjct: 511 TSDMAIISRKGSTLVREIREKQSSNKSRQRFWELAGSKLGDILGVEKTAEQIDADTATVG 570

Query: 65  NMGKL 70
             G++
Sbjct: 571 EQGEI 575
[Close]
BLAST of Spo02885.1 vs. NCBI nr
Match: gi|470149058|ref|XP_004310060.1| (PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Fragaria vesca subsp. vesca])

HSP 1 Score: 63.9 bits (154), Expect = 1.900e-7
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 1 

		  

Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAIISR+GS     + EK    + RQ F ELA SKL DILG EKTE+QVD  T  + 
Sbjct: 511 TSDMAIISRKGSTLVREIHEKQSSNKSRQRFWELAGSKLGDILGVEKTEEQVDADTAKVG 570

Query: 65  NMGKL 70
             G++
Sbjct: 571 EDGEI 575
[Close]
BLAST of Spo02885.1 vs. UniProtKB/TrEMBL
Match: A0A0V0IZI1_SOLCH (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.200e-7
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 1 

		  

Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAIISR+GSA    +REK    + RQ F ELA SKL DILG EK+ +QVD  T  + 
Sbjct: 79  TSDMAIISRKGSALVREIREKQSMHKSRQRFWELAGSKLGDILGVEKSAEQVDADTATVG 138

Query: 65  NMGKL 70
             G++
Sbjct: 139 EDGEV 143
[Close]
BLAST of Spo02885.1 vs. UniProtKB/TrEMBL
Match: K4D233_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.200e-7
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 1 

		  

Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAIISR+GSA    +REK    + RQ F ELA SKL DILG EK+ +QVD  T  + 
Sbjct: 489 TSDMAIISRKGSALVREIREKQNMHKSRQRFWELAGSKLGDILGVEKSAEQVDADTATVG 548

Query: 65  NMGKL 70
             G++
Sbjct: 549 EDGEV 553
[Close]
BLAST of Spo02885.1 vs. UniProtKB/TrEMBL
Match: A0A0E0AKD0_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.200e-7
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1 

		  

Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAI++R+GSA    +REK    + RQ F ELA SKL +ILG EKT +QVD  T  + 
Sbjct: 484 TSDMAIVARKGSALVREIREKQSMNKSRQRFWELAGSKLGNILGVEKTAEQVDADTATVG 543

Query: 65  NMGKL 70
           + G++
Sbjct: 544 DQGEI 548
[Close]
BLAST of Spo02885.1 vs. UniProtKB/TrEMBL
Match: A0A0E0AKD1_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.200e-7
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1 

		  

Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAI++R+GSA    +REK    + RQ F ELA SKL +ILG EKT +QVD  T  + 
Sbjct: 491 TSDMAIVARKGSALVREIREKQSMNKSRQRFWELAGSKLGNILGVEKTAEQVDADTATVG 550

Query: 65  NMGKL 70
           + G++
Sbjct: 551 DQGEI 555
[Close]
BLAST of Spo02885.1 vs. UniProtKB/TrEMBL
Match: A0A0E0C181_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.200e-7
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1 

		  

Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAI++R+GSA    +REK    + RQ F ELA SKL +ILG EKT +QVD  T  + 
Sbjct: 275 TSDMAIVARKGSALVREIREKQSMNKSRQRFWELAGSKLGNILGVEKTAEQVDADTATVG 334

Query: 65  NMGKL 70
           + G++
Sbjct: 335 DQGEI 339
[Close]
BLAST of Spo02885.1 vs. ExPASy Swiss-Prot
Match: PRP16_ARATH (Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 OS=Arabidopsis thaliana GN=CUV PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.200e-7
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1 

		  

Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAIISR+GS     +REK    + RQ F ELA S L +ILG EK+ +Q+D  T  + 
Sbjct: 460 TSDMAIISRKGSGLVKEIREKQSANKSRQRFWELAGSNLGNILGIEKSAEQIDADTAVVG 519

Query: 65  NMGKL 70
           + G++
Sbjct: 520 DDGEV 524
[Close]
BLAST of Spo02885.1 vs. TAIR (Arabidopsis)
Match: AT5G13010.1 (RNA helicase family protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.800e-8
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1 

		  

Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAIISR+GS     +REK    + RQ F ELA S L +ILG EK+ +Q+D  T  + 
Sbjct: 460 TSDMAIISRKGSGLVKEIREKQSANKSRQRFWELAGSNLGNILGIEKSAEQIDADTAVVG 519

Query: 65  NMGKL 70
           + G++
Sbjct: 520 DDGEV 524
The following BLAST results are available for this feature:
BLAST of Spo02885.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|1021525019|ref|XP_016205896.1|1.4e-752.3PREDICTED: pre-mRNA-splicing f... [more]
gi|1012219723|ref|XP_015935424.1|1.4e-752.3PREDICTED: pre-mRNA-splicing f... [more]
gi|1012186616|ref|XP_015969605.1|1.4e-752.3PREDICTED: pre-mRNA-splicing f... [more]
gi|1021557481|ref|XP_016170061.1|1.4e-752.3PREDICTED: pre-mRNA-splicing f... [more]
gi|470149058|ref|XP_004310060.1|1.9e-753.8PREDICTED: pre-mRNA-splicing f... [more]
back to top
BLAST of Spo02885.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0V0IZI1_SOLCH2.2e-753.8Putative pre-mRNA-splicing fac... [more]
K4D233_SOLLC2.2e-753.8Uncharacterized protein OS=Sol... [more]
A0A0E0AKD0_9ORYZ2.2e-750.7Uncharacterized protein OS=Ory... [more]
A0A0E0AKD1_9ORYZ2.2e-750.7Uncharacterized protein OS=Ory... [more]
A0A0E0C181_9ORYZ2.2e-750.7Uncharacterized protein OS=Ory... [more]
back to top
BLAST of Spo02885.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRP16_ARATH3.2e-747.6Pre-mRNA-splicing factor ATP-d... [more]
back to top
BLAST of Spo02885.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G13010.11.8e-847.6RNA helicase family protein[more]
back to top
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0097159 organic cyclic compound binding