Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTATTGTTGGAAAGCTACTCATTCCCCTCCACTTCTATGGTGGGTTCTACTTTCCTTATCAGAGTTTGACATTTTATAAATCCAACTGATGCCCTCCACTACTCATTACACATGCCTCACATTCAGAAGTCACAGAGGAAAAAAAATATCCCAAGTGCCTTTCATCACCACATCATAACAAGATATGCCCAAATGTATATAATTCTTAGACGGAAGGCGGAGACAGAAAGTGCGCGCCACACTTAACTTCAGAAAATTCCGGTTATCCTCCAAAAGAGCCCCATTATTTGACTTTTTTTCTGGCTTGGAGTAAAAAACGTCTAGGTGTGCATTATCATATCTTAAGCTTTCTAACAATAGCCTTCACTATATATATGTCAACGGTACAACTCTGTATAGTACTCCAGCTACCATAGTGTAATACCTCAAGTTCAGCAATAAAATATGGCTTCCCACATGCTTCATCTCTTTGTGATCATGCTCGCTTGTTCTTACCTTATCTCGTCAAATGCTATCCCCATGTCAAGTAAAATACAGCAAAACTATCTTAAATAAAGTCTCACTATGGTTGTTCTTTTTATATCTTTTCCTTGACTAGTCTTTGTTTTTTTGTCGGTGTTACCATTTCAGGGCTTAGCAATATCCAAAACAAAGGAAGAGAAGTTCTAGCAACAAGAAGCATAAATCAGGTATTTGTACATCTATATATGCAGCTCATGCACCATGTATGAAGGTCATTCCTTTTCCTGTAACTAATTTATGTTCTGTTTTCTAACAGGATCAGATGATACCAGAGGATAAGATGGAGGAGGATTCTATTGAGGGTAGGATGGATTTTGAGAAGAATGATTATGGACCGACAACATCAAATCCAGTCCACACCCCGAGGCCACCACGTCGATGATGCTAAGTGTGTTGCTTATCTCCACAGCTTGTAATAAAACCATAAAACCATATTTGCCATCATAGCTCAGGCAAGTGTAGGCGTGTAGCATATGATGGCAAATTCTGATCCTAACCCTTAATTATGGGGAGATCAGTACCATTAGCTATTTAGCCAACAACTAATGTAAATATCGAGCAATACTTCTTTGATGTATCCTTAATGGTTTGTCTTCAAGGAAATTACATGGCTGGCCCTATCTAATTAGGTTGATCATAAATGGGTTGGTCAGTTGGTAGCTAGGCTAGTTTCTGTTACATAGATATGTCTTAAGACTCTTAACCTGTAATGATCTTCTACTTTCTAATAGTATGAAATTTATCTTATAGAAATCATTAGATCACACTGTTCCAACTAGATTGTTAATTTCTTTCACTTTAAGGTTGATCAGACAAGAAGTACTAAAGTGCGT
mRNA sequence
ATTATTGTTGGAAAGCTACTCATTCCCCTCCACTTCTATGGTGGGTTCTACTTTCCTTATCAGAGTTTGACATTTTATAAATCCAACTGATGCCCTCCACTACTCATTACACATGCCTCACATTCAGAAGTCACAGAGGAAAAAAAATATCCCAAGTGCCTTTCATCACCACATCATAACAAGATATGCCCAAATGTATATAATTCTTAGACGGAAGGCGGAGACAGAAAGTGCGCGCCACACTTAACTTCAGAAAATTCCGGTTATCCTCCAAAAGAGCCCCATTATTTGACTTTTTTTCTGGCTTGGAGTAAAAAACGTCTAGGTGTGCATTATCATATCTTAAGCTTTCTAACAATAGCCTTCACTATATATATGTCAACGGTACAACTCTGTATAGTACTCCAGCTACCATAGTGTAATACCTCAAGTTCAGCAATAAAATATGGCTTCCCACATGCTTCATCTCTTTGTGATCATGCTCGCTTGTTCTTACCTTATCTCGTCAAATGCTATCCCCATGTCAAGGCTTAGCAATATCCAAAACAAAGGAAGAGAAGTTCTAGCAACAAGAAGCATAAATCAGGATCAGATGATACCAGAGGATAAGATGGAGGAGGATTCTATTGAGGGTAGGATGGATTTTGAGAAGAATGATTATGGACCGACAACATCAAATCCAGTCCACACCCCGAGGCCACCACGTCGATGATGCTAAGTGTGTTGCTTATCTCCACAGCTTGTAATAAAACCATAAAACCATATTTGCCATCATAGCTCAGGCAAGTGTAGGCGTGTAGCATATGATGGCAAATTCTGATCCTAACCCTTAATTATGGGGAGATCAGTACCATTAGCTATTTAGCCAACAACTAATGTAAATATCGAGCAATACTTCTTTGATGTATCCTTAATGGTTTGTCTTCAAGGAAATTACATGGCTGGCCCTATCTAATTAGGTTGATCATAAATGGGTTGGTCAGTTGGTAGCTAGGCTAGTTTCTGTTACATAGATATGTCTTAAGACTCTTAACCTGTAATGATCTTCTACTTTCTAATAGTATGAAATTTATCTTATAGAAATCATTAGATCACACTGTTCCAACTAGATTGTTAATTTCTTTCACTTTAAGGTTGATCAGACAAGAAGTACTAAAGTGCGT
Coding sequence (CDS)
ATGGCTTCCCACATGCTTCATCTCTTTGTGATCATGCTCGCTTGTTCTTACCTTATCTCGTCAAATGCTATCCCCATGTCAAGGCTTAGCAATATCCAAAACAAAGGAAGAGAAGTTCTAGCAACAAGAAGCATAAATCAGGATCAGATGATACCAGAGGATAAGATGGAGGAGGATTCTATTGAGGGTAGGATGGATTTTGAGAAGAATGATTATGGACCGACAACATCAAATCCAGTCCACACCCCGAGGCCACCACGTCGATGA
Protein sequence
MASHMLHLFVIMLACSYLISSNAIPMSRLSNIQNKGREVLATRSINQDQMIPEDKMEEDSIEGRMDFEKNDYGPTTSNPVHTPRPPRR
Homology
BLAST of Spo10786.1 vs. NCBI nr
Match:
gi|902169337|gb|KNA07651.1| (hypothetical protein SOVF_169960 [Spinacia oleracea])
HSP 1 Score: 151.4 bits (381), Expect = 7.500e-34
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1
Query: 12 MLACSYLISSNAIPMSRLSNIQNKGREVLATRSINQDQMIPEDKMEEDSIEGRMDFEKND 71
MLACSYLISSNAIPMSRLSNIQNKGREVL TRSINQDQMIPEDKMEEDSIEGRMDFEKND
Sbjct: 1 MLACSYLISSNAIPMSRLSNIQNKGREVLETRSINQDQMIPEDKMEEDSIEGRMDFEKND 60
Query: 72 YGPTTSNPVHTPRPPRR 89
YGPTTSNPVHTPRPPRR
Sbjct: 61 YGPTTSNPVHTPRPPRR 77
BLAST of Spo10786.1 vs. NCBI nr
Match:
gi|870855312|gb|KMT07045.1| (hypothetical protein BVRB_6g153740 [Beta vulgaris subsp. vulgaris])
HSP 1 Score: 121.7 bits (304), Expect = 6.400e-25
Identity = 63/88 (71.59%), Postives = 76/88 (86.36%), Query Frame = 1
Query: 1 MASHMLHLFVIMLACSYLI-SSNAIPMSRLSNIQNKGREVLATRSINQDQMIPEDKMEED 60
MASH++ +FV++LACSYLI SSNAIP SRLSN+ GR V+ T+S+++ QMI E KME++
Sbjct: 1 MASHVVPMFVLVLACSYLIISSNAIPASRLSNLPTIGRAVVVTKSMDEGQMISEAKMEDE 60
Query: 61 SIEGRMDFEKNDYGPTTSNPVHTPRPPR 88
IEGRMDFEKNDYGPTTSNPVHTPRPPR
Sbjct: 61 FIEGRMDFEKNDYGPTTSNPVHTPRPPR 88
BLAST of Spo10786.1 vs. NCBI nr
Match:
gi|719965919|ref|XP_010257658.1| (PREDICTED: uncharacterized protein LOC104597668 [Nelumbo nucifera])
HSP 1 Score: 58.9 bits (141), Expect = 5.100e-6
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 1
Query: 1 MASHMLHLFVIMLACSYLISSNAIPMSRLSNIQNKGREVLATRSINQD-QMIPEDKMEED 60
MA LHL VI+L+ S+LIS NA+P++R N+ + R +L S N Q E+ EE+
Sbjct: 1 MAGSPLHLLVILLSFSHLISLNAVPITRTRNLLSDTRVLLPADSENTHLQASTEEVWEEE 60
Query: 61 SIEGRMDFEKNDYGPTTSNPVHTPRPP 87
GRM E NDY + +N HTP+PP
Sbjct: 61 LANGRMGLELNDYPGSGANNRHTPKPP 87
BLAST of Spo10786.1 vs. UniProtKB/TrEMBL
Match:
A0A0K9QM67_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_169960 PE=4 SV=1)
HSP 1 Score: 151.4 bits (381), Expect = 5.200e-34
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1
Query: 12 MLACSYLISSNAIPMSRLSNIQNKGREVLATRSINQDQMIPEDKMEEDSIEGRMDFEKND 71
MLACSYLISSNAIPMSRLSNIQNKGREVL TRSINQDQMIPEDKMEEDSIEGRMDFEKND
Sbjct: 1 MLACSYLISSNAIPMSRLSNIQNKGREVLETRSINQDQMIPEDKMEEDSIEGRMDFEKND 60
Query: 72 YGPTTSNPVHTPRPPRR 89
YGPTTSNPVHTPRPPRR
Sbjct: 61 YGPTTSNPVHTPRPPRR 77
BLAST of Spo10786.1 vs. UniProtKB/TrEMBL
Match:
A0A0J8BZX1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g153740 PE=4 SV=1)
HSP 1 Score: 121.7 bits (304), Expect = 4.400e-25
Identity = 63/88 (71.59%), Postives = 76/88 (86.36%), Query Frame = 1
Query: 1 MASHMLHLFVIMLACSYLI-SSNAIPMSRLSNIQNKGREVLATRSINQDQMIPEDKMEED 60
MASH++ +FV++LACSYLI SSNAIP SRLSN+ GR V+ T+S+++ QMI E KME++
Sbjct: 1 MASHVVPMFVLVLACSYLIISSNAIPASRLSNLPTIGRAVVVTKSMDEGQMISEAKMEDE 60
Query: 61 SIEGRMDFEKNDYGPTTSNPVHTPRPPR 88
IEGRMDFEKNDYGPTTSNPVHTPRPPR
Sbjct: 61 FIEGRMDFEKNDYGPTTSNPVHTPRPPR 88
The following BLAST results are available for this feature:
BLAST of Spo10786.1 vs. NCBI nr
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
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BLAST of Spo10786.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
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BLAST of Spo10786.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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BLAST of Spo10786.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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