Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AGAGGGAAGTGTATTCGGCAAATTTTCCTAATTGCCCAAAATAGTCGGGTGATTGAACTCATTTTATACTTTATAGTATTCTCACAATCTCACTTGGTCCCCCGTCCTCTCCATCGGGAATAATCTGGAAGTTCATATTATAGCCCGGAAACGCCCAAATAACACTTCACCACTTCGCCGGAACCCTAATTTCCGAAATATTCATGGCCGAAAAATTGGCTCCCGATAAGCGCCATGTCTTTGTTCACAACGGTATCCCTTTACCCCTCTTTGTTTCTTGTGAATTCGATCGACTGATTAGTTTGATTGCAAATTTTGACTTTCAATTGGATTTTCCCAATTTATCAGGTCAGAAGGTGTTTGAATGGGATCAAACCCTAGATGAGGTTAACATGTACATAACATTACCTCCAAATGTGCCTACAAAGCAATTTTTTAGCAAAATTCAGTCTAAGCATGTCGAAGTTGGGATTAAAGGCAATCCTCCTTATCTTAATGTTAGTATTTGCATAAAGTTGTTATTTTTAGTTGATTTATCATTTCCTATTTTTCCAGATGGAAATGCTTATTTGATTGTTGATGATGTAATTTTGTTGTGGTTTTTCAGCATGATTTGGAGCATCCTGTGAAGACTGACTCCTCTTTCTGGACTTTGGGTAAGTTTTCGTTCTGTAAGCAGTTTTCTAGATTGTGAAATTGTATGCCAAGTGAATTGAATCATATAGTTAAGGAATTCATCAAATTGGTTATAAAAATGGTACTCTGAACAGTCTAAACACTCGACATTAGAAGTGGCTAATACAAAAGAAAACGTAAAATACTCGTATATGAGTTAATGTGTGGTTGCAAGTGGTGTTATGGACTTGTTCAGGGCTTGGTCGGCGATTCACTTTGTGTGAAAGCCACCTTAGGACTTAGGTAGATTCCCTTCTCTTATGTTTTCAAATTTCAACTGTGTCATAACCTTGTTTATAAATTGATGTCAAAGTACGTCATGCTTAAAAAGTCCAGAGGATCGTTCTTGCTGAACTATGTTATTTGTGCTTAGTTCTATGGAAACATGTAGTTACATGTATGCAGCTGGGTTTGGCTTTCTTGTGAGATGTGCAGTGTTATTGGTTTAATCAGTGTAGTGTCTTGTTTTGTTGTCTGATTGCTGGATGATACGTTGTTCGTAGATGTTGAACTATCTTTTTGAATGTCAGAGGACGATACGATGCATATAACCTTGCAAAAGAGGGAGAAAGGCCTAACATGGTCTTCACCTATCGTTGGTCAAGGTCAGCTGGATGCTTATGCTGCAGATCAAGAGCAGAAGCGCTTGATGCTCCAGCGTTTTCAAGAAGAGGTAATTTGTTATCATTGTATTCTTTTTTCAAATTGTAGACTTGTAGTATCTGCTACAGTTATGCATATCTAGTTGTGCTTCATTAATAGAGGTTATCAGGTAAAGTTTCACTAAGGACATGCTTGGATTGAGGGTAATGTATTAAAGGGGTAATAAAAGTCAAACTAAGGTAATTGAAGGTGATGACGAGGGATGAAGTGGTGGCAAAGGAAACAAGCTAGTGTTGGCAAGAGGAAAATAAAAGTGAAGGAGGAACAAATACCTCATCATGGGGGGAGTAGTTACCCACCATCCCACTAGGGTGATTATTACCCTCATTTGGGGGTAATTACTTCCCCCCTTCCTCCCTTCTCCTCACAACACCACCACTACCACAACTTCTCATCACAATACCACCACACCACCCTCCTTGCAACCACCTCAATTCACCTTCATTGTCCTTTTATTATGGTGGTTTGACTTTTATTACCTCCATAATCCATTACACCCAATCCAAGCGTGCCCTAAGTGGAAATTCTTGCGATAATCTAAAATAAGAAATATTTTGGAAAGTGGAAACCTATCCATTGGAATAGCAATACGATTTGTCTTGCCAGAAAATGAAAAAACAATAGTGGCAAATCTCAATTTATTTTTGGGTTTTGCTTAAAGAGTTCTTTGTGCTTTCGTCAGGTGAAAATATTTAGAAACTAATTGGCAATGCTGTTTTTAGGGTGATCGTTTGCTTCATTGCTTGTTTATATCTTGATTGTTGTTCAGTTATCATTTTAAAAAAAAATTTGTTTGTTTTATTGGGGTGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGCGAGTAATTGATATGGCTGATAAGGTAGTTAAACAAAATATTTTAGCTATAATGCGTTATCGTTTCATGATTAGGAGCCCTGGCAATCAACTTATTGACATGTCCTTCATTGGGGGTGTAGACCTCTTCATTCTTCAATGTTTTTTCTAATGTTTTATGCAGTTGGACAATTCAAAATTTGTTACATCTCTATATCATGCTTTAAGACACGTCTTGATCAATCCAACAGTGAACATTTGATTGAAAGGGCACTGAGATGGATGATATATTTGATACTGGCTTGTCTTCTATGTAAGTGGATGGAGAATTCACGATCAAGATCAAACAAGTTGGACCTAACTTCAGAACTTTCATCCCTAGCAATTGACACCAACATGTGAGACGAACACACCAAATTGTTCCATCTGTTGGTTTGAGGACCTAATCAAGTAATCATATATTTTGATGTTTGAACTGAGCTGGCATGTTTTGAAACATGGAGTTAGGACAAATTCTATGACATAGCTAAGCAATCTTTCGGGTCATTAGAATAATGGGTATTATATAGAATCCTAGGAAGCTCAAGTTGAAATCCGCCTCTGTAGTTCTACCTTTTGGCTTCAGTTCCCTGTTTCTTTACCCCTGAGTAGAAAGCCTTGGTATATACAGATTATTGCTCTATCCTGTTGAGATTTGTTGGGCTTTGGTTGAATTGGAGTGGTTATAATTGCTTTTGGGTTAATGTCTCATGTCACCTTTTTGGCTGGAGTATTTGTTACTTGCCACAAAACAGTCATGCTCCTATATTCCCTGATAGGAACAGGTTATTTGCATCCAAGGCCGCTGCTTGAAAACATCTTTGATCTTTTCACACTAGGTATAATAGTGTGATTATCTGTTCTGATTGTTTTGCTGTGTCGTGGGACTTTCAAATGCTTTGTTTATGTATGCCCTGTCTGATGCAGCTGCTCGATTTGTCCATATATTTCAGTTTACTTATAATTGGATAATTAGTTGTGAGGTGTGGTCCATGGTGCATCAACTTTTCAACCGTCTTAAGTACTTGCTTTTTTTCTCGCAGAACCCTGGTTTTGACTTCTCGCAAGCAGATTTCAGTGGAAACTGTCCAGATCCAAGAACCTTCATGGGCGGAATTCGCTAG AGAGGGAAGTGTATTCGGCAAATTTTCCTAATTGCCCAAAATAGTCGGGTGATTGAACTCATTTTATACTTTATAGTATTCTCACAATCTCACTTGGTCCCCCGTCCTCTCCATCGGGAATAATCTGGAAGTTCATATTATAGCCCGGAAACGCCCAAATAACACTTCACCACTTCGCCGGAACCCTAATTTCCGAAATATTCATGGCCGAAAAATTGGCTCCCGATAAGCGCCATGTCTTTGTTCACAACGGTCAGAAGGTGTTTGAATGGGATCAAACCCTAGATGAGGTTAACATGTACATAACATTACCTCCAAATGTGCCTACAAAGCAATTTTTTAGCAAAATTCAGTCTAAGCATGTCGAAGTTGGGATTAAAGGCAATCCTCCTTATCTTAATCATGATTTGGAGCATCCTGTGAAGACTGACTCCTCTTTCTGGACTTTGGAGGACGATACGATGCATATAACCTTGCAAAAGAGGGAGAAAGGCCTAACATGGTCTTCACCTATCGTTGGTCAAGGTCAGCTGGATGCTTATGCTGCAGATCAAGAGCAGAAGCGCTTGATGCTCCAGCGTTTTCAAGAAGAGAACCCTGGTTTTGACTTCTCGCAAGCAGATTTCAGTGGAAACTGTCCAGATCCAAGAACCTTCATGGGCGGAATTCGCTAG ATGGCCGAAAAATTGGCTCCCGATAAGCGCCATGTCTTTGTTCACAACGGTCAGAAGGTGTTTGAATGGGATCAAACCCTAGATGAGGTTAACATGTACATAACATTACCTCCAAATGTGCCTACAAAGCAATTTTTTAGCAAAATTCAGTCTAAGCATGTCGAAGTTGGGATTAAAGGCAATCCTCCTTATCTTAATCATGATTTGGAGCATCCTGTGAAGACTGACTCCTCTTTCTGGACTTTGGAGGACGATACGATGCATATAACCTTGCAAAAGAGGGAGAAAGGCCTAACATGGTCTTCACCTATCGTTGGTCAAGGTCAGCTGGATGCTTATGCTGCAGATCAAGAGCAGAAGCGCTTGATGCTCCAGCGTTTTCAAGAAGAGAACCCTGGTTTTGACTTCTCGCAAGCAGATTTCAGTGGAAACTGTCCAGATCCAAGAACCTTCATGGGCGGAATTCGCTAG MAEKLAPDKRHVFVHNGQKVFEWDQTLDEVNMYITLPPNVPTKQFFSKIQSKHVEVGIKGNPPYLNHDLEHPVKTDSSFWTLEDDTMHITLQKREKGLTWSSPIVGQGQLDAYAADQEQKRLMLQRFQEENPGFDFSQADFSGNCPDPRTFMGGIR Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21002.1 vs. NCBI nr
Match: gi|902240181|gb|KNA25916.1| (hypothetical protein SOVF_002380 [Spinacia oleracea]) HSP 1 Score: 334.3 bits (856), Expect = 1.100e-88 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1
BLAST of Spo21002.1 vs. NCBI nr
Match: gi|731348579|ref|XP_010685559.1| (PREDICTED: nudC domain-containing protein 2 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 305.1 bits (780), Expect = 7.200e-80 Identity = 141/156 (90.38%), Postives = 147/156 (94.23%), Query Frame = 1
BLAST of Spo21002.1 vs. NCBI nr
Match: gi|351723663|ref|NP_001236519.1| (uncharacterized protein LOC100306544 [Glycine max]) HSP 1 Score: 296.2 bits (757), Expect = 3.300e-77 Identity = 136/156 (87.18%), Postives = 145/156 (92.95%), Query Frame = 1
BLAST of Spo21002.1 vs. NCBI nr
Match: gi|1012364928|gb|KYP76110.1| (NudC domain-containing protein 2 [Cajanus cajan]) HSP 1 Score: 294.7 bits (753), Expect = 9.700e-77 Identity = 134/156 (85.90%), Postives = 146/156 (93.59%), Query Frame = 1
BLAST of Spo21002.1 vs. NCBI nr
Match: gi|747055869|ref|XP_011074183.1| (PREDICTED: nudC domain-containing protein 2 [Sesamum indicum]) HSP 1 Score: 294.3 bits (752), Expect = 1.300e-76 Identity = 136/156 (87.18%), Postives = 142/156 (91.03%), Query Frame = 1
BLAST of Spo21002.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S2D9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_002380 PE=4 SV=1) HSP 1 Score: 334.3 bits (856), Expect = 7.700e-89 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1
BLAST of Spo21002.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BVD2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g172190 PE=4 SV=1) HSP 1 Score: 305.1 bits (780), Expect = 5.000e-80 Identity = 141/156 (90.38%), Postives = 147/156 (94.23%), Query Frame = 1
BLAST of Spo21002.1 vs. UniProtKB/TrEMBL
Match: C6SZU0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G063100 PE=2 SV=1) HSP 1 Score: 296.2 bits (757), Expect = 2.300e-77 Identity = 136/156 (87.18%), Postives = 145/156 (92.95%), Query Frame = 1
BLAST of Spo21002.1 vs. UniProtKB/TrEMBL
Match: A0A151U9W1_CAJCA (NudC domain-containing protein 2 OS=Cajanus cajan GN=KK1_020334 PE=4 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 6.800e-77 Identity = 134/156 (85.90%), Postives = 146/156 (93.59%), Query Frame = 1
BLAST of Spo21002.1 vs. UniProtKB/TrEMBL
Match: A0A0B2PF32_GLYSO (NudC domain-containing protein 2 OS=Glycine soja GN=glysoja_030299 PE=4 SV=1) HSP 1 Score: 294.3 bits (752), Expect = 8.900e-77 Identity = 135/156 (86.54%), Postives = 144/156 (92.31%), Query Frame = 1
BLAST of Spo21002.1 vs. ExPASy Swiss-Prot
Match: NUDC2_HUMAN (NudC domain-containing protein 2 OS=Homo sapiens GN=NUDCD2 PE=1 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 8.700e-17 Identity = 48/126 (38.10%), Postives = 69/126 (54.76%), Query Frame = 1
BLAST of Spo21002.1 vs. ExPASy Swiss-Prot
Match: NUDC2_MOUSE (NudC domain-containing protein 2 OS=Mus musculus GN=Nudcd2 PE=1 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 8.700e-17 Identity = 48/126 (38.10%), Postives = 69/126 (54.76%), Query Frame = 1
BLAST of Spo21002.1 vs. ExPASy Swiss-Prot
Match: NUDC2_RAT (NudC domain-containing protein 2 OS=Rattus norvegicus GN=Nudcd2 PE=2 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 8.700e-17 Identity = 48/126 (38.10%), Postives = 69/126 (54.76%), Query Frame = 1
BLAST of Spo21002.1 vs. ExPASy Swiss-Prot
Match: NUDC1_DANRE (NudC domain-containing protein 1 OS=Danio rerio GN=nudcd1 PE=2 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 2.300e-9 Identity = 35/121 (28.93%), Postives = 60/121 (49.59%), Query Frame = 1
BLAST of Spo21002.1 vs. ExPASy Swiss-Prot
Match: BOB1_ARATH (Protein BOBBER 1 OS=Arabidopsis thaliana GN=BOB1 PE=1 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 3.000e-9 Identity = 38/158 (24.05%), Postives = 66/158 (41.77%), Query Frame = 1
BLAST of Spo21002.1 vs. TAIR (Arabidopsis)
Match: AT5G58740.1 (HSP20-like chaperones superfamily protein) HSP 1 Score: 290.8 bits (743), Expect = 5.000e-79 Identity = 134/156 (85.90%), Postives = 141/156 (90.38%), Query Frame = 1
BLAST of Spo21002.1 vs. TAIR (Arabidopsis)
Match: AT5G53400.1 (HSP20-like chaperones superfamily protein) HSP 1 Score: 63.2 bits (152), Expect = 1.700e-10 Identity = 38/158 (24.05%), Postives = 66/158 (41.77%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21002.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo21002.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo21002.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo21002.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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