Spo07599 (gene) | SpinachBase

Overview


Name	Spo07599
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	60S ribosomal protein L37a-2
Location	chr1 : 43561068 .. 43563332 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTTTTTTTTTACTTTTATCAATTTTAAATAAAGAAAAGGTAATTTGAGAATTATCATAGTGAGCAATGGGCCAACCATGAATATAATGACAAATTGACAATCCACCCATACACCCATTAAAAGCCCAAAGAAGCAAAAGTGGACTGTAAATCTACTAACCCTAACCCAATCCTATTTTATTAAGTTCGCTGTTTTTTTCTTCTTCGTTTTCTCTGCACGCCGTCGACTCCCCAACCATGGTAATTTCTCTCTCCTCCTCTCTCTTCATTTGGAATCTGTGGAATGTCAAATGACTGGTACTTTGTTTTTGATTTGATGTGGGGGGTTTTGTATTATCATGTTCATGCCGATTGTGAGCTTAATTTTTGGCTTTGGGGTTGAAATCGAAGATTTCTAGGGTTTATGCAATTAAATTTTGGAATCTGTGGATTTGGGTCAATTTTTAGGGGTTGTTTTCTACATGTTTGAGATTCATGATTATGGAGTCTTTTCTTTAAGATTTGTTTATAATATATTGATACTATACGATGTTATGTTATTGGCATGATAATATCATTGTCACGCCGTATTAATTATGGGTGTGTAGATTGACAAAATGTTCTAGGGTTTATGCTCGGACAATGTTTTTTAGGTTGAAATAAGCCCTTGATTGAACTGAACTGAATAGCGAGAGAGTTGCAATTTTTGCATTGTTTATTTTTTTGTTATTGATGCCATTTGTTTGTTGTACAATTTTGGGTGAGCTGAGTTGAGTTAGTAATGCTCATTATAGTTCTGTAAATTTTTTCTGTTCGCCACTTTTAAATTTGAATGTTGTTGATGCATACAGGCCAAGAGAACCAAGAAGGTCGGTATTGTCGGGAAATACGGTGAGTTCGGCTGTGATCATGTTGTCGGGATGTCATATCGCATAACATAATGCCATTTGATTGGAATAGAGTCTTTGACATCAGTGAGGGAAACAAGAAATCATATCTGGCATTCTTGATATTATGCATTTGATATATTTTTGTCTAGAACTGCTTCATATTTATAATGAGAAGTTAGTTCAAGACTTTTCCTGTTTGATTAATTTTGAATTAGGAGTGAGTTATTACTTTTGTTATCACAATTAATTAATATCATTGTGTTGTTTAGGTACCCGATATGGTGCCAGTCTGCGTAAGCAGATTAAGAAGATGGAGGTGAGTCAACACAGCAAGTACTTTTGTGAGTTCTGCGGAAAGGTAAAGCTCCATTCTTTAATCAATATCTATCTATTGTCTGTGAATCAACTTAATTTTTGATGTCTGATTGTAAAAACACTATGATGCAGTACGCCGTGAAGAGACAGGCTGTTGGTATCTGGGGATGCAAGGATTGTGGGAAGGTCAAGGCTGGTGGTGCTTACACTTTGAAGTAGGGGATCTTTACATAAACTAATGCTAATTATACATAATAATTTCATTGTTTTTATTTCTTTACTGATTTGTTTTCTATGTTTGAACAGCACCGCCAGTGCAGTGACAGTGAGAAGTACAATCAGGAGGCTCAGGGAGCAGACTGAGAGTTAGATCTTTCACTAGTGCTTATCTTTTGAAAACAATTAGAGAATTAGAGAGTTGGTGTTTTTTACTTCTGAATTCTGTTGGTTCTCCCTTTACCTTGTTATTCCGGGGAATCCTAATTTCAGTAGATATTTGAGTTTCAACATTACGAAAGCAATTGTTCTGCTGGTTTTCGCTGATCCTTTTGGAAAGGTGATTTAATCCGGGATTGGGTTGGATTTGTCGATGAGTTTTTGGGTAGCACTGTGGTTTTGTTTTTGTTGTTGCATCATATGAAATATGCATTTATGTTTTGCTTGAAATTTGGTATTAAAAAATGGAGACCGAGTTATGGCCCTATTGTTTCACACATGGTTAGCACTTAGCATAGTGAGCTAGATTAGGCTGTATTGCTTCATTCCCTGTGTACCCTGCATTGGCTGCATATTCATAGAAAACAAGTTAGTACTGCATGCTAGTGAGAGCTGATTCTGTCAGATTTGCAAGTGTGTGGCTATGTTTTGTTATGGTGTTTGGTTCACAAGTTAGAGGTGATGTGTCTGCAGTTCTAAACTTCTATGGTATGGAAATGGAAGTATTAGGGTATGAACTGTGAAGTTTCCAAAAAGCATCATTCAATGGAGCTTTACTGAGTAAGAACATAAATAAAACCCAACCCTAAACCTTGACTAGTTATCAAGCTCTTTTAACTGAAGTACTGCATTAACATTAAC

mRNA sequence

TTTTTTTTTTTTTTTACTTTTATCAATTTTAAATAAAGAAAAGGTAATTTGAGAATTATCATAGTGAGCAATGGGCCAACCATGAATATAATGACAAATTGACAATCCACCCATACACCCATTAAAAGCCCAAAGAAGCAAAAGTGGACTGTAAATCTACTAACCCTAACCCAATCCTATTTTATTAAGTTCGCTGTTTTTTTCTTCTTCGTTTTCTCTGCACGCCGTCGACTCCCCAACCATGGCCAAGAGAACCAAGAAGGTCGGTATTGTCGGGAAATACGGTACCCGATATGGTGCCAGTCTGCGTAAGCAGATTAAGAAGATGGAGGTGAGTCAACACAGCAAGTACTTTTGTGAGTTCTGCGGAAAGTACGCCGTGAAGAGACAGGCTGTTGGTATCTGGGGATGCAAGGATTGTGGGAAGGTCAAGGCTGGTGGTGCTTACACTTTGAACACCGCCAGTGCAGTGACAGTGAGAAGTACAATCAGGAGGCTCAGGGAGCAGACTGAGAGTTAGATCTTTCACTAGTGCTTATCTTTTGAAAACAATTAGAGAATTAGAGAGTTGGTGTTTTTTACTTCTGAATTCTGTTGGTTCTCCCTTTACCTTGTTATTCCGGGGAATCCTAATTTCAGTAGATATTTGAGTTTCAACATTACGAAAGCAATTGTTCTGCTGGTTTTCGCTGATCCTTTTGGAAAGGTGATTTAATCCGGGATTGGGTTGGATTTGTCGATGAGTTTTTGGGTAGCACTGTGGTTTTGTTTTTGTTGTTGCATCATATGAAATATGCATTTATGTTTTGCTTGAAATTTGGTATTAAAAAATGGAGACCGAGTTATGGCCCTATTGTTTCACACATGGTTAGCACTTAGCATAGTGAGCTAGATTAGGCTGTATTGCTTCATTCCCTGTGTACCCTGCATTGGCTGCATATTCATAGAAAACAAGTTAGTACTGCATGCTAGTGAGAGCTGATTCTGTCAGATTTGCAAGTGTGTGGCTATGTTTTGTTATGGTGTTTGGTTCACAAGTTAGAGGTGATGTGTCTGCAGTTCTAAACTTCTATGGTATGGAAATGGAAGTATTAGGGTATGAACTGTGAAGTTTCCAAAAAGCATCATTCAATGGAGCTTTACTGAGTAAGAACATAAATAAAACCCAACCCTAAACCTTGACTAGTTATCAAGCTCTTTTAACTGAAGTACTGCATTAACATTAAC

Coding sequence (CDS)

ATGGCCAAGAGAACCAAGAAGGTCGGTATTGTCGGGAAATACGGTACCCGATATGGTGCCAGTCTGCGTAAGCAGATTAAGAAGATGGAGGTGAGTCAACACAGCAAGTACTTTTGTGAGTTCTGCGGAAAGTACGCCGTGAAGAGACAGGCTGTTGGTATCTGGGGATGCAAGGATTGTGGGAAGGTCAAGGCTGGTGGTGCTTACACTTTGAACACCGCCAGTGCAGTGACAGTGAGAAGTACAATCAGGAGGCTCAGGGAGCAGACTGAGAGTTAG

Protein sequence

MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo07599.1	Spo07599.1	mRNA

Homology

[Close]

BLAST of Spo07599.1 vs. NCBI nr
Match: gi|848866574|ref|XP_012833952.1| (PREDICTED: 60S ribosomal protein L37a-like [Erythranthe guttata])

HSP 1 Score: 185.7 bits (470), Expect = 3.800e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1

		  
Query: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC 60
          MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC
Sbjct: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Spo07599.1 vs. NCBI nr
Match: gi|747043785|ref|XP_011085665.1| (PREDICTED: 60S ribosomal protein L37a [Sesamum indicum])

HSP 1 Score: 184.1 bits (466), Expect = 1.100e-43
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 1

		  
Query: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC 60
          MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKR+AVGIWGCKDC
Sbjct: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Spo07599.1 vs. NCBI nr
Match: gi|604343407|gb|EYU42327.1| (hypothetical protein MIMGU_mgv1a0171311mg, partial [Erythranthe guttata])

HSP 1 Score: 181.8 bits (460), Expect = 5.400e-43
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 1

		  
Query: 2  AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCG 61
          AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKR+AVGIWGCKDCG
Sbjct: 1  AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCG 60

Query: 62 KVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          KVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 KVKAGGAYTLNTASAVTVRSTIRRLREQTES 91

[Close]

BLAST of Spo07599.1 vs. NCBI nr
Match: gi|702272875|ref|XP_010043792.1| (PREDICTED: 60S ribosomal protein L37a-like [Eucalyptus grandis])

HSP 1 Score: 181.4 bits (459), Expect = 7.100e-43
Identity = 88/92 (95.65%), Postives = 92/92 (100.00%), Query Frame = 1

		  
Query: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC 60
          MAKRTKKVGIVGKYGTRYGASLRKQIKKMEV+QHSKYFCEFCGKYAVKR++VGIWGCKDC
Sbjct: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVTQHSKYFCEFCGKYAVKRKSVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GK+KAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKIKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Spo07599.1 vs. NCBI nr
Match: gi|595849622|ref|XP_007209764.1| (hypothetical protein PRUPE_ppa013350mg [Prunus persica])

HSP 1 Score: 181.0 bits (458), Expect = 9.300e-43
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1

		  
Query: 1   MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC 60
           M KRTKK GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKR+AVGIWGCKDC
Sbjct: 37  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 96

Query: 61  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
           GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 97  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 128

[Close]

BLAST of Spo07599.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S0Q1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_007820 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.600e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1

		  
Query: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC 60
          MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC
Sbjct: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Spo07599.1 vs. UniProtKB/TrEMBL
Match: A0A022RJG1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017136mg PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.600e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1

		  
Query: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC 60
          MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC
Sbjct: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Spo07599.1 vs. UniProtKB/TrEMBL
Match: A0A022RPB9_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0171311mg PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.800e-43
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 1

		  
Query: 2  AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCG 61
          AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKR+AVGIWGCKDCG
Sbjct: 1  AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCG 60

Query: 62 KVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          KVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 KVKAGGAYTLNTASAVTVRSTIRRLREQTES 91

[Close]

BLAST of Spo07599.1 vs. UniProtKB/TrEMBL
Match: A0A058ZS13_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01912 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 4.900e-43
Identity = 88/92 (95.65%), Postives = 92/92 (100.00%), Query Frame = 1

		  
Query: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC 60
          MAKRTKKVGIVGKYGTRYGASLRKQIKKMEV+QHSKYFCEFCGKYAVKR++VGIWGCKDC
Sbjct: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVTQHSKYFCEFCGKYAVKRKSVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GK+KAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKIKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Spo07599.1 vs. UniProtKB/TrEMBL
Match: A0A067JYD1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14663 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 6.500e-43
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1

		  
Query: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC 60
          M KRTKK GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKR+AVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Spo07599.1 vs. ExPASy Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 4.900e-44
Identity = 88/92 (95.65%), Postives = 89/92 (96.74%), Query Frame = 1

		  
Query: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC 60
          M KRTKK GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKR+AVGIWGCK C
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKAC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Spo07599.1 vs. ExPASy Swiss-Prot
Match: RL371_ORYSJ (60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 6.400e-44
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 1

		  
Query: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC 60
          M KRTKK GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKR+AVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]

BLAST of Spo07599.1 vs. ExPASy Swiss-Prot
Match: RL372_ORYSJ (60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica GN=Os05g0557000 PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 6.400e-44
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 1

		  
Query: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC 60
          M KRTKK GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKR+AVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]

BLAST of Spo07599.1 vs. ExPASy Swiss-Prot
Match: R37A2_ARATH (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana GN=RPL37AC PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 8.400e-44
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 1

		  
Query: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC 60
          MAKRTKKVGIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKR+AVGIWGCKDC
Sbjct: 1  MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 92
          GKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91

[Close]

BLAST of Spo07599.1 vs. ExPASy Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 5.400e-43
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 1

		  
Query: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC 60
          M KRTKK GIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK+AVKR+AVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 92
          GKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct: 61 GKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91

[Close]

BLAST of Spo07599.1 vs. TAIR (Arabidopsis)
Match: AT3G60245.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 177.2 bits (448), Expect = 4.700e-45
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 1

		  
Query: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC 60
          MAKRTKKVGIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKR+AVGIWGCKDC
Sbjct: 1  MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 92
          GKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91

[Close]

BLAST of Spo07599.1 vs. TAIR (Arabidopsis)
Match: AT3G10950.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 173.3 bits (438), Expect = 6.800e-44
Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 1

		  
Query: 1  MAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDC 60
          M KRTKK  IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKR+ VGIWGCKDC
Sbjct: 1  MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

The following BLAST results are available for this feature:

BLAST of Spo07599.1 vs. NCBI nr
BLAST of Spo07599.1 vs. UniProtKB/TrEMBL
BLAST of Spo07599.1 vs. ExPASy Swiss-Prot
BLAST of Spo07599.1 vs. TAIR (Arabidopsis)

BLAST of Spo07599.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|848866574\|ref\|XP_012833952.1\|	3.8e-44	100.	PREDICTED: 60S ribosomal prote...	[more]
gi\|747043785\|ref\|XP_011085665.1\|	1.1e-43	98.9	PREDICTED: 60S ribosomal prote...	[more]
gi\|604343407\|gb\|EYU42327.1\|	5.4e-43	98.9	hypothetical protein MIMGU_mgv...	[more]
gi\|702272875\|ref\|XP_010043792.1\|	7.1e-43	95.6	PREDICTED: 60S ribosomal prote...	[more]
gi\|595849622\|ref\|XP_007209764.1\|	9.3e-43	96.7	hypothetical protein PRUPE_ppa...	[more]

BLAST of Spo07599.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9S0Q1_SPIOL	2.6e-44	100.	Uncharacterized protein OS=Spi...	[more]
A0A022RJG1_ERYGU	2.6e-44	100.	Uncharacterized protein OS=Ery...	[more]
A0A022RPB9_ERYGU	3.8e-43	98.9	Uncharacterized protein (Fragm...	[more]
A0A058ZS13_EUCGR	4.9e-43	95.6	Uncharacterized protein OS=Euc...	[more]
A0A067JYD1_JATCU	6.5e-43	96.7	Uncharacterized protein OS=Jat...	[more]

BLAST of Spo07599.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
RL37A_GOSHI	4.9e-44	95.6	60S ribosomal protein L37a OS=...	[more]
RL371_ORYSJ	6.4e-44	93.4	60S ribosomal protein L37a-1 O...	[more]
RL372_ORYSJ	6.4e-44	93.4	60S ribosomal protein L37a-2 O...	[more]
R37A2_ARATH	8.4e-44	94.5	60S ribosomal protein L37a-2 O...	[more]
RL37A_PSEMZ	5.4e-43	93.4	60S ribosomal protein L37a OS=...	[more]

BLAST of Spo07599.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT3G60245.1	4.7e-45	94.5	Zinc-binding ribosomal protein...	[more]
AT3G10950.1	6.8e-44	91.3	Zinc-binding ribosomal protein...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002674	Ribosomal protein L37ae	HAMAP	MF_00327	Ribosomal_L37Ae	coord: 4..72 score: 19
IPR002674	Ribosomal protein L37ae	PFAM	PF01780	Ribosomal_L37ae	coord: 4..88 score: 5.3
IPR002674	Ribosomal protein L37ae	TIGRFAMs	TIGR00280	TIGR00280	coord: 1..91 score: 7.9
IPR011331	Ribosomal protein L37ae/L37e	GENE3D	2.20.25.30		coord: 10..91 score: 1.5
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 10..82 score: 8.55
None	No IPR available	unknown	Coil	Coil	coord: 83..92 scor

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006414	translational elongation
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006354	DNA-templated transcription, elongation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo17929	0.77	Barchart \| Table
Spo26636	0.76	Barchart \| Table
Spo24414	0.76	Barchart \| Table
Spo20161	0.75	Barchart \| Table
Spo00170	0.73	Barchart \| Table
Spo12304	0.72	Barchart \| Table
Spo05547	0.72	Barchart \| Table
Spo28098	0.71	Barchart \| Table
Spo08768	0.71	Barchart \| Table
Spo17110	0.71	Barchart \| Table
Spo00566	0.70	Barchart \| Table
Spo09714	0.70	Barchart \| Table
Spo21768	0.70	Barchart \| Table
Spo04381	0.70	Barchart \| Table
Spo17500	0.70	Barchart \| Table
Spo16627	0.69	Barchart \| Table
Spo25523	0.69	Barchart \| Table
Spo07206	0.68	Barchart \| Table
Spo15517	0.68	Barchart \| Table
Spo16033	0.68	Barchart \| Table
Spo08488	0.67	Barchart \| Table
Spo07223	0.67	Barchart \| Table
Spo07955	0.67	Barchart \| Table
Spo01262	0.67	Barchart \| Table
Spo22394	0.66	Barchart \| Table
Spo13731	0.66	Barchart \| Table
Spo13279	0.66	Barchart \| Table
Spo02189	0.65	Barchart \| Table
Spo12048	0.65	Barchart \| Table
Spo25669	0.65	Barchart \| Table