Spo07600 (gene)

Overview
NameSpo07600
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPolyubiquitin (Ubiquitin) (Precursor)
Locationchr1 : 43574820 .. 43575290 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTGGAATCCTCCGATACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCGGACCAGCAACGCCTGATCTTCGCCGGGAAGCAATTAGAGGATGGAAGAACACTCGCCGATTACAACATTCAGAAGGAATCGACCCTTCACTTGGTGCTCCGTCTTCGTGGTGGGACTATGATTAAGGTCAAAACCCTAACTGGGAAGGAAATCGAGATTGATATTGAACCAACTGATACTATTGATCGTATTAAGGAGCGCGTGGAGGAGAAAGAAGGTATACCACCTGTTCAACAGAGGTTGATTTATGCTGGGAAGCAGCTTGCCGATGATAAGACTGCTAAGGAATATAATATTGAAGGGGGTTCTGTTCTTCACCTTGTTCTTGCTCTTAGAGGAGGTGCTGCTTCTGCTTAA

mRNA sequence

ATGCAAATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTGGAATCCTCCGATACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCGGACCAGCAACGCCTGATCTTCGCCGGGAAGCAATTAGAGGATGGAAGAACACTCGCCGATTACAACATTCAGAAGGAATCGACCCTTCACTTGGTGCTCCGTCTTCGTGGTGGGACTATGATTAAGGTCAAAACCCTAACTGGGAAGGAAATCGAGATTGATATTGAACCAACTGATACTATTGATCGTATTAAGGAGCGCGTGGAGGAGAAAGAAGGTATACCACCTGTTCAACAGAGGTTGATTTATGCTGGGAAGCAGCTTGCCGATGATAAGACTGCTAAGGAATATAATATTGAAGGGGGTTCTGTTCTTCACCTTGTTCTTGCTCTTAGAGGAGGTGCTGCTTCTGCTTAA

Coding sequence (CDS)

ATGCAAATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTGGAATCCTCCGATACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCGGACCAGCAACGCCTGATCTTCGCCGGGAAGCAATTAGAGGATGGAAGAACACTCGCCGATTACAACATTCAGAAGGAATCGACCCTTCACTTGGTGCTCCGTCTTCGTGGTGGGACTATGATTAAGGTCAAAACCCTAACTGGGAAGGAAATCGAGATTGATATTGAACCAACTGATACTATTGATCGTATTAAGGAGCGCGTGGAGGAGAAAGAAGGTATACCACCTGTTCAACAGAGGTTGATTTATGCTGGGAAGCAGCTTGCCGATGATAAGACTGCTAAGGAATATAATATTGAAGGGGGTTCTGTTCTTCACCTTGTTCTTGCTCTTAGAGGAGGTGCTGCTTCTGCTTAA

Protein sequence

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGAASA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo07600.1Spo07600.1mRNA


Homology
[Close]
BLAST of Spo07600.1 vs. NCBI nr
Match: gi|902212433|gb|KNA16971.1| (hypothetical protein SOVF_084460 [Spinacia oleracea])

HSP 1 Score: 299.7 bits (766), Expect = 3.000e-78
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGGAASA 157
           YAGKQLADDKTAKEYNIEGGSVLHLVLALRGGAASA
Sbjct: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGGAASA 156
[Close]
BLAST of Spo07600.1 vs. NCBI nr
Match: gi|902236340|gb|KNA24339.1| (hypothetical protein SOVF_016390 [Spinacia oleracea])

HSP 1 Score: 295.0 bits (754), Expect = 7.500e-77
Identity = 153/156 (98.08%), Postives = 154/156 (98.72%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGGAASA 157
           YAGKQLADDKTAK+YNIEGGSVLHLVLALRGGA SA
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGACSA 156
[Close]
BLAST of Spo07600.1 vs. NCBI nr
Match: gi|567212859|ref|XP_006410729.1| (hypothetical protein EUTSA_v10017351mg [Eutrema salsugineum])

HSP 1 Score: 294.3 bits (752), Expect = 1.300e-76
Identity = 153/156 (98.08%), Postives = 154/156 (98.72%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGGAASA 157
           YAGKQLADDKTAK+YNIEGGSVLHLVLALRGG A A
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGFAPA 156
[Close]
BLAST of Spo07600.1 vs. NCBI nr
Match: gi|574584361|ref|NP_001276242.1| (ubiquitin-NEDD8-like protein RUB1-like [Glycine max])

HSP 1 Score: 293.9 bits (751), Expect = 1.700e-76
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG 152
[Close]
BLAST of Spo07600.1 vs. NCBI nr
Match: gi|357494497|ref|XP_003617537.1| (ubiquitin-NEDD8 RUB1-like protein [Medicago truncatula])

HSP 1 Score: 293.9 bits (751), Expect = 1.700e-76
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG 152
[Close]
BLAST of Spo07600.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBV6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_084460 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.100e-78
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGGAASA 157
           YAGKQLADDKTAKEYNIEGGSVLHLVLALRGGAASA
Sbjct: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGGAASA 156
[Close]
BLAST of Spo07600.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RZI4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_016390 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 5.200e-77
Identity = 153/156 (98.08%), Postives = 154/156 (98.72%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGGAASA 157
           YAGKQLADDKTAK+YNIEGGSVLHLVLALRGGA SA
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGACSA 156
[Close]
BLAST of Spo07600.1 vs. UniProtKB/TrEMBL
Match: V4MAN5_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017351mg PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 8.900e-77
Identity = 153/156 (98.08%), Postives = 154/156 (98.72%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGGAASA 157
           YAGKQLADDKTAK+YNIEGGSVLHLVLALRGG A A
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGFAPA 156
[Close]
BLAST of Spo07600.1 vs. UniProtKB/TrEMBL
Match: V7BW88_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G060100g PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.200e-76
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG 152
[Close]
BLAST of Spo07600.1 vs. UniProtKB/TrEMBL
Match: A0A0S3SKJ4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G221100 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.200e-76
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG 152
[Close]
BLAST of Spo07600.1 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=3)

HSP 1 Score: 292.7 bits (748), Expect = 2.300e-78
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAK+YNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152
[Close]
BLAST of Spo07600.1 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=2 SV=2)

HSP 1 Score: 292.7 bits (748), Expect = 2.300e-78
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAK+YNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152
[Close]
BLAST of Spo07600.1 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=2 SV=2)

HSP 1 Score: 292.7 bits (748), Expect = 2.300e-78
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAK+YNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152
[Close]
BLAST of Spo07600.1 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=2)

HSP 1 Score: 292.4 bits (747), Expect = 3.000e-78
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAK+YNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152
[Close]
BLAST of Spo07600.1 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=1 SV=3)

HSP 1 Score: 289.7 bits (740), Expect = 2.000e-77
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAK+Y IEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 152
[Close]
BLAST of Spo07600.1 vs. TAIR (Arabidopsis)
Match: AT1G31340.1 (related to ubiquitin 1)

HSP 1 Score: 292.7 bits (748), Expect = 1.300e-79
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAK+YNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152
[Close]
BLAST of Spo07600.1 vs. TAIR (Arabidopsis)
Match: AT2G35635.1 (ubiquitin 7)

HSP 1 Score: 289.7 bits (740), Expect = 1.100e-78
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAK+Y IEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 152
[Close]
BLAST of Spo07600.1 vs. TAIR (Arabidopsis)
Match: AT5G20620.1 (ubiquitin 4)

HSP 1 Score: 240.4 bits (612), Expect = 7.700e-64
Identity = 122/153 (79.74%), Postives = 136/153 (88.89%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGGA 154
           +AGKQL D +T  +YNI+  S LHLVL LRGG+
Sbjct: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGS 381
[Close]
BLAST of Spo07600.1 vs. TAIR (Arabidopsis)
Match: AT5G03240.1 (polyubiquitin 3)

HSP 1 Score: 240.4 bits (612), Expect = 7.700e-64
Identity = 122/153 (79.74%), Postives = 136/153 (88.89%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGGA 154
           +AGKQL D +T  +YNI+  S LHLVL LRGG+
Sbjct: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGS 305
[Close]
BLAST of Spo07600.1 vs. TAIR (Arabidopsis)
Match: AT4G05050.1 (ubiquitin 11)

HSP 1 Score: 240.0 bits (611), Expect = 1.000e-63
Identity = 122/152 (80.26%), Postives = 135/152 (88.82%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGG 153
           +AGKQL D +T  +YNI+  S LHLVL LRGG
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
The following BLAST results are available for this feature:
BLAST of Spo07600.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902212433|gb|KNA16971.1|3.0e-78100.hypothetical protein SOVF_0844... [more]
gi|902236340|gb|KNA24339.1|7.5e-7798.0hypothetical protein SOVF_0163... [more]
gi|567212859|ref|XP_006410729.1|1.3e-7698.0hypothetical protein EUTSA_v10... [more]
gi|574584361|ref|NP_001276242.1|1.7e-76100.ubiquitin-NEDD8-like protein R... [more]
gi|357494497|ref|XP_003617537.1|1.7e-76100.ubiquitin-NEDD8 RUB1-like prot... [more]
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BLAST of Spo07600.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RBV6_SPIOL2.1e-78100.Uncharacterized protein OS=Spi... [more]
A0A0K9RZI4_SPIOL5.2e-7798.0Uncharacterized protein OS=Spi... [more]
V4MAN5_EUTSA8.9e-7798.0Uncharacterized protein OS=Eut... [more]
V7BW88_PHAVU1.2e-76100.Uncharacterized protein OS=Pha... [more]
A0A0S3SKJ4_PHAAN1.2e-76100.Uncharacterized protein OS=Vig... [more]
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BLAST of Spo07600.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RUB1_ARATH2.3e-7899.3Ubiquitin-NEDD8-like protein R... [more]
RUB2_ORYSJ2.3e-7899.3Ubiquitin-NEDD8-like protein R... [more]
RUB1_ORYSJ2.3e-7899.3Ubiquitin-NEDD8-like protein R... [more]
RUB1_DESAN3.0e-7898.6Ubiquitin-NEDD8-like protein R... [more]
RUB2_ARATH2.0e-7798.6Ubiquitin-NEDD8-like protein R... [more]
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BLAST of Spo07600.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT1G31340.11.3e-7999.3related to ubiquitin 1[more]
AT2G35635.11.1e-7898.6ubiquitin 7[more]
AT5G20620.17.7e-6479.7ubiquitin 4[more]
AT5G03240.17.7e-6479.7polyubiquitin 3[more]
AT4G05050.11.0e-6380.2ubiquitin 11[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 79..150
score: 4.9E-28coord: 3..74
score: 3.6
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 1..72
score: 3.0E-35coord: 77..148
score: 1.4
IPR000626Ubiquitin domainPROFILEPS50053UBIQUITIN_2coord: 77..152
score: 26.598coord: 1..76
score: 30
IPR019954Ubiquitin conserved sitePROSITEPS00299UBIQUITIN_1coord: 27..52
score: -coord: 103..128
scor
IPR019956UbiquitinPRINTSPR00348UBIQUITINcoord: 11..31
score: 6.1E-39coord: 53..74
score: 6.1E-39coord: 32..52
score: 6.1
NoneNo IPR availableGENE3D3.10.20.90coord: 1..78
score: 1.3E-50coord: 79..154
score: 3.7
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 1..152
score: 4.8E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0006366 transcription by RNA polymerase II
biological_process GO:0007034 vacuolar transport
biological_process GO:0015031 protein transport
biological_process GO:0006425 glutaminyl-tRNA aminoacylation
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0070676 intralumenal vesicle formation
biological_process GO:0006508 proteolysis
biological_process GO:0031047 gene silencing by RNA
biological_process GO:0006468 protein phosphorylation
biological_process GO:0051301 cell division
biological_process GO:0010051 xylem and phloem pattern formation
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0009887 animal organ morphogenesis
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0007267 cell-cell signaling
biological_process GO:0010050 vegetative phase change
biological_process GO:0006306 DNA methylation
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
biological_process GO:0048439 flower morphogenesis
biological_process GO:0010014 meristem initiation
biological_process GO:0010073 meristem maintenance
biological_process GO:0006346 methylation-dependent chromatin silencing
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0000902 cell morphogenesis
biological_process GO:0016049 cell growth
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006412 translation
biological_process GO:0031048 chromatin silencing by small RNA
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0009630 gravitropism
biological_process GO:0045132 meiotic chromosome segregation
biological_process GO:0006312 mitotic recombination
biological_process GO:0007062 sister chromatid cohesion
biological_process GO:0006886 intracellular protein transport
biological_process GO:0042147 retrograde transport, endosome to Golgi
biological_process GO:0016043 cellular component organization
biological_process GO:0009987 cellular process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006629 lipid metabolic process
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0006487 protein N-linked glycosylation
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0006486 protein glycosylation
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0035101 FACT complex
cellular_component GO:0030904 retromer complex
cellular_component GO:0046658 anchored component of plasma membrane
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0000815 ESCRT III complex
cellular_component GO:0005770 late endosome
cellular_component GO:0005719 nuclear euchromatin
cellular_component GO:0000786 nucleosome
cellular_component GO:0031902 late endosome membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005829 cytosol
cellular_component GO:0016020 membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005768 endosome
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0031461 cullin-RING ubiquitin ligase complex
cellular_component GO:0055029 nuclear DNA-directed RNA polymerase complex
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005730 nucleolus
cellular_component GO:0000785 chromatin
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0005488 binding
molecular_function GO:0019905 syntaxin binding
molecular_function GO:0008081 phosphoric diester hydrolase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function GO:0046872 metal ion binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005506 iron ion binding
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
molecular_function GO:0032440 2-alkenal reductase [NAD(P)] activity
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0020037 heme binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004819 glutamine-tRNA ligase activity
molecular_function GO:0004185 serine-type carboxypeptidase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0046982 protein heterodimerization activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo074150.74Barchart | Table
Spo003890.74Barchart | Table
Spo013970.74Barchart | Table
Spo242680.72Barchart | Table
Spo092610.72Barchart | Table
Spo007830.72Barchart | Table
Spo003080.72Barchart | Table
Spo031970.72Barchart | Table
Spo224580.72Barchart | Table
Spo002990.72Barchart | Table
Spo232630.71Barchart | Table
Spo208260.71Barchart | Table
Spo127490.71Barchart | Table
Spo005790.70Barchart | Table
Spo171230.70Barchart | Table
Spo105510.70Barchart | Table
Spo117590.70Barchart | Table
Spo141720.70Barchart | Table
Spo057060.70Barchart | Table
Spo264820.69Barchart | Table
Spo098420.69Barchart | Table
Spo076940.69Barchart | Table
Spo095590.69Barchart | Table
Spo108500.69Barchart | Table
Spo119930.69Barchart | Table
Spo158200.69Barchart | Table
Spo013130.69Barchart | Table
Spo011460.69Barchart | Table
Spo235070.68Barchart | Table
Spo135140.68Barchart | Table
Spo023470.68Barchart | Table
Spo030020.68Barchart | Table
Spo229700.68Barchart | Table
Spo168820.68Barchart | Table
Spo250130.68Barchart | Table
Spo239570.68Barchart | Table
Spo062910.68Barchart | Table
Spo266900.68Barchart | Table
Spo233210.68Barchart | Table
Spo109400.68Barchart | Table
Spo116230.68Barchart | Table
Spo119520.68Barchart | Table
Spo102510.67Barchart | Table
Spo134670.67Barchart | Table
Spo243610.67Barchart | Table
Spo105500.67Barchart | Table
Spo204570.67Barchart | Table
Spo000730.67Barchart | Table
Spo026550.67Barchart | Table
Spo020130.67Barchart | Table
Spo153620.67Barchart | Table
Spo122850.67Barchart | Table
Spo017060.67Barchart | Table
Spo150120.67Barchart | Table
Spo087990.67Barchart | Table
Spo083550.67Barchart | Table
Spo005360.67Barchart | Table
Spo106180.66Barchart | Table
Spo010480.66Barchart | Table
Spo041460.66Barchart | Table
Spo051240.66Barchart | Table
Spo058530.66Barchart | Table
Spo067520.66Barchart | Table
Spo085110.66Barchart | Table
Spo089630.66Barchart | Table
Spo089700.66Barchart | Table
Spo103990.66Barchart | Table
Spo104430.66Barchart | Table
Spo109350.66Barchart | Table
Spo149560.66Barchart | Table
Spo158650.66Barchart | Table
Spo160880.66Barchart | Table
Spo165290.66Barchart | Table
Spo166870.66Barchart | Table
Spo168040.66Barchart | Table
Spo169370.66Barchart | Table
Spo181350.66Barchart | Table
Spo183300.66Barchart | Table
Spo204970.66Barchart | Table
Spo206930.66Barchart | Table
Spo242320.66Barchart | Table
Spo170980.65Barchart | Table
Spo168810.65Barchart | Table
Spo092600.65Barchart | Table
Spo091450.65Barchart | Table
Spo063830.65Barchart | Table
Spo059480.65Barchart | Table
Spo001370.65Barchart | Table
Spo058940.65Barchart | Table
Spo042810.65Barchart | Table
Spo042790.65Barchart | Table
Spo259360.65Barchart | Table
Spo261010.65Barchart | Table
Spo013750.65Barchart | Table
Spo204900.65Barchart | Table