Spo04927 (gene)

Overview
NameSpo04927
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 47485596 .. 47485887 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGGTAAAGAGGAGGAAGAGAAGAGAAGCATCCAAGCTTTGGAGGTTGTTGCACGCCACAGATCATTAGATCCTGCATTTCTCATCAATTTTCCTTGCCTTATGCCGTAATTTATTCTTTTTTTGTATTTATATTCTTGCAATCATCTCTTCTTCCTCTTCCGTCTTCATACAATTTATCAATTCTCTCTCATCAAGATTGATTTTGTTGAATTTTGGGAGTTGCGATCTAAAACACCGCTGCGTGCTCTGCTGCTGCTCCTCTCAGACTCTCATCTCTATTAAATAA

mRNA sequence

ATGCAGGGTAAAGAGGAGGAAGAGAAGAGAAGCATCCAAGCTTTGGAGGTTGTTGCACGCCACAGATCATTAGATCCTGCATTTCTCATCAATTTTCCTTGCCTTATGCCATTGATTTTGTTGAATTTTGGGAGTTGCGATCTAAAACACCGCTGCGTGCTCTGCTGCTGCTCCTCTCAGACTCTCATCTCTATTAAATAA

Coding sequence (CDS)

ATGCAGGGTAAAGAGGAGGAAGAGAAGAGAAGCATCCAAGCTTTGGAGGTTGTTGCACGCCACAGATCATTAGATCCTGCATTTCTCATCAATTTTCCTTGCCTTATGCCATTGATTTTGTTGAATTTTGGGAGTTGCGATCTAAAACACCGCTGCGTGCTCTGCTGCTGCTCCTCTCAGACTCTCATCTCTATTAAATAA

Protein sequence

MQGKEEEEKRSIQALEVVARHRSLDPAFLINFPCLMPLILLNFGSCDLKHRCVLCCCSSQTLISIK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo04927.1Spo04927.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo04927.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo04927.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo04927.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo04927.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0006486 protein glycosylation
biological_process GO:0016567 protein ubiquitination
biological_process GO:0031047 gene silencing by RNA
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0005768 endosome
cellular_component GO:0009507 chloroplast
cellular_component GO:0005829 cytosol
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0042393 histone binding
molecular_function GO:0005515 protein binding
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
molecular_function GO:0046872 metal ion binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo056310.73Barchart | Table
Spo071840.73Barchart | Table
Spo250130.71Barchart | Table
Spo092660.71Barchart | Table
Spo083270.70Barchart | Table
Spo020130.70Barchart | Table
Spo002990.70Barchart | Table
Spo229060.70Barchart | Table
Spo055570.70Barchart | Table
Spo271660.69Barchart | Table
Spo242940.69Barchart | Table
Spo261900.69Barchart | Table
Spo093500.69Barchart | Table
Spo031970.68Barchart | Table
Spo140080.68Barchart | Table
Spo154200.68Barchart | Table
Spo166870.68Barchart | Table
Spo184510.68Barchart | Table
Spo236080.68Barchart | Table
Spo247060.68Barchart | Table
Spo109940.67Barchart | Table
Spo071990.67Barchart | Table
Spo102220.67Barchart | Table
Spo267060.67Barchart | Table
Spo246260.67Barchart | Table
Spo241170.67Barchart | Table
Spo013970.66Barchart | Table
Spo173860.66Barchart | Table
Spo183300.66Barchart | Table
Spo206390.66Barchart | Table
Spo207040.66Barchart | Table
Spo208520.66Barchart | Table
Spo035960.66Barchart | Table
Spo233290.66Barchart | Table
Spo051920.66Barchart | Table
Spo099490.66Barchart | Table
Spo103990.66Barchart | Table
Spo112600.66Barchart | Table
Spo003890.66Barchart | Table
Spo021150.66Barchart | Table
Spo031960.66Barchart | Table
Spo068190.66Barchart | Table
Spo066160.66Barchart | Table
Spo059280.66Barchart | Table
Spo265600.65Barchart | Table
Spo082560.65Barchart | Table
Spo056550.65Barchart | Table
Spo234340.65Barchart | Table
Spo209090.65Barchart | Table
Spo196350.65Barchart | Table
Spo152700.65Barchart | Table