Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAGTGGTAGATAATTTACCCGGTGGATGGTGGGTACACAATTTATTTTTTTTCTTTTACCACCCCCTGCCCTCGGTGGTAAAAGTTAGATTAAAATTCAATGGTTTAATGGTTAAATTGAAGGGCTCTATGAAAGTGGCGTTTATAAATAAATGGGATAGAGCGAACTCCGAAATCACACAAAAAACAACACTGAAAGTACAGTCTTCTTGTCTCTCTTTCTCTCACACAATCAGCGTGCTCTCTCTAAAACTGCACTTTCCTGTCTTTTCCCACTTTTTCTTTAACCCATTAACAATGGCGATTCATGCATTTCTCTTCTTTCTTGCTATTTTATCAAAGCCCCTCTTTCTTCATGCTAATTTAGAAGGTATTTTATTTTGCTAATTAATTTCCTCTTTCTGGGTTCAAATTTAAAATTTAGTTCATGTTCATTTCTTCATCAAAAAAACATATAATTTGACAAATTATTTTTCTTTTCTGGTGCAACAGGGGATGCACTCTATGCACTGAGGAGGTCAGTAATTGACCCAGGAAATGTGTTGCAAAGCTGGGATCCGACCCTTGTTGACCCATGTACTTGGTTTCATGTCACCTGTGACCATGATAATCGGGTCACCCGCCTGTAATTCCTCTCTCTCTCTCTCTTCACCTTTCAATTTCTTCATTTTAATAATTAATTAGCTTAATTTATACTTAAACTAGTTCAATTCAACACAAATTACTTCTTTTTTGGTTAATATTCTATTAAATTGCTAAAAATCTGATAATTTTAGCATTTTTATCTAAATTTTGTGGCTAATTAATGGAAATAAATGGTACTTCGTAACAGAGATCTTGGAAATGCAAAGTTAACAGGAAAATTAGTACCAGAGTTGGGAAAGCTTGAGCGCCTTCAGTATCTGTAAGTAATTCTTCCGTTCCAAACTAATTGTCTCTTTAATTAACTCCTTCAATTCCTAAATAATTGTCGTTTTTACTGTCTTAATTGTTACGGAGTCTAATTTAATTTCAATCAAATAAAGTAGTGATATCTATCTATATTCTGCACATTAAATGATTTACAAGTAATTCTCTGGTTTTTAATTTTTCAGATCTAGTATTTCCTATTTTACCTGCCATTTAATTTATTGTTTCTTAAATTGACATGTGCATTCTCTTGCCTGCATTCATGCTCATCTCCTTACCATCATAAAGTTTAAAGGAAATTTTGAAAATCTTTTTTTTCTTTTTGTTCTTTTTTGGGTACTAATGCAAGGGTATTACAATTTACAAATGAGAAGGGGGATTCGAACATGTGACCTTGTACACAGACACTCAGTTTTAACCACTAGGCCAAGACTACTCTCGAGAATCTCGACTAATTATGTTTAAAGGTGTAATTATGTTATGTTATCGTTGTATCGAACGCAATGAACAAGTAGGACAACTGATGCACCCGTCTTGGGAGAGTCGGCTTTACGAGTTTGGACTTATTGTAGGAGAATTTTTGGAACGGTGTAATAAAAGGGGTATTTTCGAGTGTAAATAACTCGGTCTCAGAGCTTGGTAATCTTTTCTCAAGAACTAGTAGTTCAAGTGCATTAGTCTTGCCCACTTGAGCTTGGTTAATCCTTTTTTGTTTTATCTAAGATGTGCTTTAGTAATGACAAAAATGACTATTGTAATTTCACTATCATTTTAATATAGAATTATGTGGATGAAATTCGAATCTACCCACCACCCATAAATTGAGCACAATGAATATTGTACTGGTCTCTTTTGTTAATTTGATGGCTCCACTGTGTTAATTAGTACTATAATAAGTTGGTAGCAATTAGTATATCATTATGGATGAATAATTAATTGAACCATTGATTTTTGGTGCGGTTTTGACAGGGAACTCTACACGAACAACTTTGTAGGCCCGATACCAAAGGAGTTTGGTGGCCTAAAGAGCCTTGTGAGCTTAGATTTGTTTCACAATAATCTCACCGGTCCAATTCCTTCTTCGCTTTCTAAGCTCTCCAGTCTTAAATTTCTGTAAGTATTGACATTGCTAAGTTCATTTTCAGTTCTCCTGTTTGGCATAACTGTACTTAACCAAAGATGGCAATGGAAACTCATGTAATCAAGAAACCGTGTTTAATCAACATCTTCAAAATTCAAATGTACATGCAAAACACGAGCATCATTTCCAGATTAATATGCTGTAAACAATTTGATATGAATCAAGTTATTCATTTCAAACGGTGTCATTATAAAATGTCTAATGACGCCTCTTGTGCATGCAGGCGATTGAACCACAACAATCTGACAGGAAGAATCCCTAGAGAGCTTACCAAGCTTGGAAACCTTAAGATCCTGTATGCCTCTCAATCATATAACATTAATCCCTCTTTTAGAACATTTAAAACATGTTTACTCATAATCTTCGTTTTGGCGCTGCAGAAATGTATCAAACAATAACTTGTGCGGTACTTTTCCAACGTCTGGTTCCTTCTCCAAGTTCACAGAACAGAGGTGATCACAATCTACAATCTTCTAAGTAATCTCTACTGTATTTTATCAGTTGGACTGACAAATAGGTATTTTCCTGCAATTGGTATTGCAGTTTTGTGAACAATCCCAGGATAGAAGGACCGGAGTTGATTGGGTTTGTCCGATACGACTCAGGAAGAGATTGTAACTGAAGTTTGAGAAGAGGCACTAGATTACTTGGCAAAGTTAAAACCAATTATGTCATAGGAGTATTTCATAGTTAACATTATACTGCATCAAAAAAGGATCGATTACGGGCGTAGAGCCGTAGTCATTTAGGGTCTGTTAAGACAACTCTAATATTGGATGAATCCTTGTTTTGACTTAAGGTTATCAAATGTATTATATCTATTAATTAACACTCAGAACTACTTGTTTTGTAACTGGTTCAATTCCTGAGTAACAAGTTTATTGTGGGGGAAGATTTTTCAATTGGCTGAAAC CAGTGGTAGATAATTTACCCGGTGGATGGTGGGTACACAATTTATTTTTTTTCTTTTACCACCCCCTGCCCTCGGTGGTAAAAGTTAGATTAAAATTCAATGGTTTAATGGTTAAATTGAAGGGCTCTATGAAAGTGGCGTTTATAAATAAATGGGATAGAGCGAACTCCGAAATCACACAAAAAACAACACTGAAAGTACAGTCTTCTTGTCTCTCTTTCTCTCACACAATCAGCGTGCTCTCTCTAAAACTGCACTTTCCTGTCTTTTCCCACTTTTTCTTTAACCCATTAACAATGGCGATTCATGCATTTCTCTTCTTTCTTGCTATTTTATCAAAGCCCCTCTTTCTTCATGCTAATTTAGAAGGGGATGCACTCTATGCACTGAGGAGGTCAGTAATTGACCCAGGAAATGTGTTGCAAAGCTGGGATCCGACCCTTGTTGACCCATGTACTTGGTTTCATGTCACCTGTGACCATGATAATCGGGTCACCCGCCTAGATCTTGGAAATGCAAAGTTAACAGGAAAATTAGTACCAGAGTTGGGAAAGCTTGAGCGCCTTCAGTATCTGGAACTCTACACGAACAACTTTGTAGGCCCGATACCAAAGGAGTTTGGTGGCCTAAAGAGCCTTGTGAGCTTAGATTTGTTTCACAATAATCTCACCGGTCCAATTCCTTCTTCGCTTTCTAAGCTCTCCAGTCTTAAATTTCTGCGATTGAACCACAACAATCTGACAGGAAGAATCCCTAGAGAGCTTACCAAGCTTGGAAACCTTAAGATCCTAAATGTATCAAACAATAACTTGTGCGGTACTTTTCCAACGTCTGGTTCCTTCTCCAAGTTCACAGAACAGAGTTTTGTGAACAATCCCAGGATAGAAGGACCGGAGTTGATTGGGTTTGTCCGATACGACTCAGGAAGAGATTGTAACTGAAGTTTGAGAAGAGGCACTAGATTACTTGGCAAAGTTAAAACCAATTATGTCATAGGAGTATTTCATAGTTAACATTATACTGCATCAAAAAAGGATCGATTACGGGCGTAGAGCCGTAGTCATTTAGGGTCTGTTAAGACAACTCTAATATTGGATGAATCCTTGTTTTGACTTAAGGTTATCAAATGTATTATATCTATTAATTAACACTCAGAACTACTTGTTTTGTAACTGGTTCAATTCCTGAGTAACAAGTTTATTGTGGGGGAAGATTTTTCAATTGGCTGAAAC ATGGTTAAATTGAAGGGCTCTATGAAAGTGGCGTTTATAAATAAATGGGATAGAGCGAACTCCGAAATCACACAAAAAACAACACTGAAAGTACAGTCTTCTTGTCTCTCTTTCTCTCACACAATCAGCGTGCTCTCTCTAAAACTGCACTTTCCTGTCTTTTCCCACTTTTTCTTTAACCCATTAACAATGGCGATTCATGCATTTCTCTTCTTTCTTGCTATTTTATCAAAGCCCCTCTTTCTTCATGCTAATTTAGAAGGGGATGCACTCTATGCACTGAGGAGGTCAGTAATTGACCCAGGAAATGTGTTGCAAAGCTGGGATCCGACCCTTGTTGACCCATGTACTTGGTTTCATGTCACCTGTGACCATGATAATCGGGTCACCCGCCTAGATCTTGGAAATGCAAAGTTAACAGGAAAATTAGTACCAGAGTTGGGAAAGCTTGAGCGCCTTCAGTATCTGGAACTCTACACGAACAACTTTGTAGGCCCGATACCAAAGGAGTTTGGTGGCCTAAAGAGCCTTGTGAGCTTAGATTTGTTTCACAATAATCTCACCGGTCCAATTCCTTCTTCGCTTTCTAAGCTCTCCAGTCTTAAATTTCTGCGATTGAACCACAACAATCTGACAGGAAGAATCCCTAGAGAGCTTACCAAGCTTGGAAACCTTAAGATCCTAAATGTATCAAACAATAACTTGTGCGGTACTTTTCCAACGTCTGGTTCCTTCTCCAAGTTCACAGAACAGAGTTTTGTGAACAATCCCAGGATAGAAGGACCGGAGTTGATTGGGTTTGTCCGATACGACTCAGGAAGAGATTGTAACTGA MVKLKGSMKVAFINKWDRANSEITQKTTLKVQSSCLSFSHTISVLSLKLHFPVFSHFFFNPLTMAIHAFLFFLAILSKPLFLHANLEGDALYALRRSVIDPGNVLQSWDPTLVDPCTWFHVTCDHDNRVTRLDLGNAKLTGKLVPELGKLERLQYLELYTNNFVGPIPKEFGGLKSLVSLDLFHNNLTGPIPSSLSKLSSLKFLRLNHNNLTGRIPRELTKLGNLKILNVSNNNLCGTFPTSGSFSKFTEQSFVNNPRIEGPELIGFVRYDSGRDCN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo04966.1 vs. NCBI nr
Match: gi|902236105|gb|KNA24210.1| (hypothetical protein SOVF_017580 [Spinacia oleracea]) HSP 1 Score: 441.4 bits (1134), Expect = 1.100e-120 Identity = 213/214 (99.53%), Postives = 214/214 (100.00%), Query Frame = 1
BLAST of Spo04966.1 vs. NCBI nr
Match: gi|731343012|ref|XP_010682678.1| (PREDICTED: somatic embryogenesis receptor kinase 1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 394.0 bits (1011), Expect = 2.100e-106 Identity = 193/217 (88.94%), Postives = 204/217 (94.01%), Query Frame = 1
BLAST of Spo04966.1 vs. NCBI nr
Match: gi|255543144|ref|XP_002512635.1| (PREDICTED: somatic embryogenesis receptor kinase 1 [Ricinus communis]) HSP 1 Score: 343.6 bits (880), Expect = 3.200e-91 Identity = 163/204 (79.90%), Postives = 185/204 (90.69%), Query Frame = 1
BLAST of Spo04966.1 vs. NCBI nr
Match: gi|702444043|ref|XP_010024201.1| (PREDICTED: somatic embryogenesis receptor kinase 1-like [Eucalyptus grandis]) HSP 1 Score: 337.0 bits (863), Expect = 3.000e-89 Identity = 165/216 (76.39%), Postives = 183/216 (84.72%), Query Frame = 1
BLAST of Spo04966.1 vs. NCBI nr
Match: gi|661883189|emb|CDP13397.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 336.7 bits (862), Expect = 4.000e-89 Identity = 162/211 (76.78%), Postives = 180/211 (85.31%), Query Frame = 1
BLAST of Spo04966.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RXE6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_017580 PE=4 SV=1) HSP 1 Score: 441.4 bits (1134), Expect = 8.000e-121 Identity = 213/214 (99.53%), Postives = 214/214 (100.00%), Query Frame = 1
BLAST of Spo04966.1 vs. UniProtKB/TrEMBL
Match: B9RFW6_RICCO (Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1437630 PE=4 SV=1) HSP 1 Score: 343.6 bits (880), Expect = 2.300e-91 Identity = 163/204 (79.90%), Postives = 185/204 (90.69%), Query Frame = 1
BLAST of Spo04966.1 vs. UniProtKB/TrEMBL
Match: A0A059B342_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03383 PE=4 SV=1) HSP 1 Score: 337.0 bits (863), Expect = 2.100e-89 Identity = 165/216 (76.39%), Postives = 183/216 (84.72%), Query Frame = 1
BLAST of Spo04966.1 vs. UniProtKB/TrEMBL
Match: A0A068UYK7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00038320001 PE=4 SV=1) HSP 1 Score: 336.7 bits (862), Expect = 2.800e-89 Identity = 162/211 (76.78%), Postives = 180/211 (85.31%), Query Frame = 1
BLAST of Spo04966.1 vs. UniProtKB/TrEMBL
Match: D7U606_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0146g00340 PE=4 SV=1) HSP 1 Score: 335.9 bits (860), Expect = 4.700e-89 Identity = 160/210 (76.19%), Postives = 182/210 (86.67%), Query Frame = 1
BLAST of Spo04966.1 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2) HSP 1 Score: 245.4 bits (625), Expect = 7.500e-64 Identity = 114/179 (63.69%), Postives = 142/179 (79.33%), Query Frame = 1
BLAST of Spo04966.1 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1) HSP 1 Score: 242.7 bits (618), Expect = 4.900e-63 Identity = 115/194 (59.28%), Postives = 151/194 (77.84%), Query Frame = 1
BLAST of Spo04966.1 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2) HSP 1 Score: 229.9 bits (585), Expect = 3.300e-59 Identity = 111/192 (57.81%), Postives = 141/192 (73.44%), Query Frame = 1
BLAST of Spo04966.1 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2) HSP 1 Score: 228.4 bits (581), Expect = 9.500e-59 Identity = 117/198 (59.09%), Postives = 146/198 (73.74%), Query Frame = 1
BLAST of Spo04966.1 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2) HSP 1 Score: 205.3 bits (521), Expect = 8.600e-52 Identity = 107/200 (53.50%), Postives = 136/200 (68.00%), Query Frame = 1
BLAST of Spo04966.1 vs. TAIR (Arabidopsis)
Match: AT5G21090.1 (Leucine-rich repeat (LRR) family protein) HSP 1 Score: 278.5 bits (711), Expect = 4.500e-75 Identity = 128/191 (67.02%), Postives = 155/191 (81.15%), Query Frame = 1
BLAST of Spo04966.1 vs. TAIR (Arabidopsis)
Match: AT3G43740.2 (Leucine-rich repeat (LRR) family protein) HSP 1 Score: 255.0 bits (650), Expect = 5.400e-68 Identity = 127/219 (57.99%), Postives = 149/219 (68.04%), Query Frame = 1
BLAST of Spo04966.1 vs. TAIR (Arabidopsis)
Match: AT1G71830.1 (somatic embryogenesis receptor-like kinase 1) HSP 1 Score: 245.4 bits (625), Expect = 4.200e-65 Identity = 114/179 (63.69%), Postives = 142/179 (79.33%), Query Frame = 1
BLAST of Spo04966.1 vs. TAIR (Arabidopsis)
Match: AT1G34210.1 (somatic embryogenesis receptor-like kinase 2) HSP 1 Score: 242.7 bits (618), Expect = 2.800e-64 Identity = 115/194 (59.28%), Postives = 151/194 (77.84%), Query Frame = 1
BLAST of Spo04966.1 vs. TAIR (Arabidopsis)
Match: AT2G13790.1 (somatic embryogenesis receptor-like kinase 4) HSP 1 Score: 228.4 bits (581), Expect = 5.400e-60 Identity = 117/198 (59.09%), Postives = 146/198 (73.74%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo04966.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo04966.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo04966.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo04966.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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