Spo05863 (gene) | SpinachBase

Overview


Name	Spo05863
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	40S ribosomal protein S28
Location	chr1 : 49291550 .. 49295181 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGCAAAGTACGTCTTGGAGATGATGTTAGCTTGTATCTAAATCAACTTCTAAGCCAACATTGATACTACCACAATTGACTTATCACTTCTTGGCAGCAAATCGATCTTGAAACCAGATGCTTTCCCACAAAAAACTATTTATTTCCCTCCAGGAAACTTGAGTTGGATCTGGGATTGTTGGTTGGTAGTGTTCTTAATTTCGTATAAGAGTTAGAGAGGCACGTGATTTTTTGTTTCACCCGCACAATATATTGGAGGGAAGCATGAGTCGATGGCCGAAAAGTTGACAATTAGGCCGGATTATTGCTCTAAGGTGCCAATTTTAATACAATTTTTTAATTCAAGATACTATTTTACAAAACTGAACAAATAAGGTCGTTCACACAGTGAGGCAAAAAAAAATACTTCGTATTTTGACAATTTCTCTAAATGCATTTAGTTAAATTTTTCTTGAAGAAGAAGGATGTTTCTGTATATTTTGAGTAACTAGAAAGCTTTCCTTTGAAATCGTAAAATAAAATTGTAATCAAAGAGAGAATCAATGCACGAAATCAGATTAATTGCGCCAACTAATGAACGGTTACAAACGCTACCGCCGAACACGCCCTTGGTCCAAAAAAGTATGCACACCGCGCACATGTCATGAACACGACCAACACTGGACGTCGGTGACCTGTGAGGGGATGTCCCTTTCTAGTCCAAAACACCAATGGACGTGCTCCGAAGTATATTTTTCACATGCCCATATTTAAACAAGTTAAAGGTGCTTTTTTCTATCAATATAGGGCATATATTCCCACCAAATAGTACGGAATAATCTTACAACATGGGTTTTTCTCCAACTTTTGCATTGTTTATAACAAACACGACATAACACAAGCAAAATCAAACATGTAAAAGGCGGTTTGGTGACAAAGGTTTATGATATACTACATATTTAATTTAAATGGGTTAACACGATATCACAATATGCTACATATAATTTAATGTCAATTATTTCCGGCATTAATTAAACAGATCAACACAAAACATTAATTGCAAGGATCAATACGATAAACCACGTGTTATTTATGTTAAAATTTCCGGATACGATTAACTAAAAAGGTCAACACCATATCCAACACGAACACGAGTACGACACGACACGTTTGTCAATTCTATCGAGTATCGACACTTTGTTGTCACGTGCCGTTTTTACTCCGTAACGGTTGCACATAGACTTAAACGGAGTAGATACTTAAACGGAGTAGGTATTGTAGATTGCGCCTAAACCCTAACCCTTTCTTCTTCATAAAACCTTCGCGCCGTTCTTCTCTTGGATTCCTCTCGCTTTCTCTCTCCTCAAGCTGCAAATTCAGGTAATTTCTTCAACATTCATCCTCAATTTATCATTCCTTTAACAATCGATTCTATATTCTCTCTGTTCAATTCATGTATATCAATTTGTTTAAGAATCTGCTTGTATTCTTGAATCGAATAAATGCATTGATTTGATAAATTTTGTGTTTGCTATTCTTTTGTTTGGGTTAATTTCTACAATCTGCAATTACTACTCTGGCGTGATTGTTAAAATATTATCATAATATCTTCATCCTTATTCATTCCCATTTTCTGAAGAAAAAAAATCACTTTTTTGTTTTGTTCTTGGTTTTAATTTGATTATTTCAGTGGTTATTTTTCTTTTAATTTGAGAAATAAATAGATGGGCAATGATGATAAATGCTTATTAATCCCAGCTCATTATGAGGTTTCCTTTGTGGAGATCAGGGAATTGAACTTTATCCAATATTTATCTGAGCTTTTTAGTCCCCTTTTTCAATTTTTTTTTGGAATTGATCTTACGAAATTTGGAAAATTTTAATTAGGTATTTTGTTTGTTGAAATCCCAATGATGCAATTTTATACCATGCTAATTCTGATCAACCCATGATCGATTATTTTTCACTATTGATTAGCTGAGGGCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGAATTTGTTTTTGATCTTTTAGTTGAGAAAATCTTCGATTTGGAAAAGATGAAAGAAAACTGAGTATTTTTGTGAAGTTGTACTAGTAGAAAAGGATCTGCTTTAAATTATAGCGCATTGATAACTTGATACACTGTTGTTTATGCGTGCCTGTTTACTTGGTATCTACTGCTTTGATTAGCAATGCCTCAATCCATGATTCGATGTTTTGGGAATTCGGGAGGTAATGAGAACAGTTTCAATTCCTACAAAACTCGAATAATAGGTAACCTTGCCCAATCTATTAGATGAAGACGAACTATAATGGGTACTTTATTTCATACACTCTTGTGCCCAGCTAGAGTGTTACTCTGTAAATCAATATACATGCATTCAGATTGTAAAACACCAATTTATGTGTAATTCAATGTTACTATTGCATAGGTTCGACTACCTAAGAAGTGTAGGATGTTGGTAGGGAGAAGAAGTTAAGGAACACCCTTCTGTAATCTAAGTTGGAAAAACTGTTTATATGATCCAAATATGTTATGTTCTTACTGAGTAGTCTGAATTATTTTCTGGTAAATGCGAAGGCCTTCCTTTGATGCAACAACCTTGTCCTTTCTCAGCTTTAAATTGAATGCTCTTATTTCCATATTACTAATATGATATCTACAAGTTGTTGTATGAGTGAACAATATGTTGTTATTTTAAATTGTTGGTTTAGACTGAAGTTAAATCCATTTCAATTGCAGAATGGAGTCTCAGATCAAGCATGCTGTAGTTATTAAGTGCATGGGCCGCACCGGATCAAGGGGGCAAGTGACCCAAGTCAGAGTTAAGTTTTTGGATGACCAAAACCGTTTCATCATGAGGAACGTCAAGGGACCCGTCAGAGAGGGAGACATTCTTACCCTCCTCGAGTCTGAGAGAGAAGCTAGGAGACTTAGATGAAGTACCCGCCTTGTTGCTGAAGGCTGCAGCTATATTTCTGTTTTGGCTTCGGTTATGGTTTTTGCCTGAGTTAGATTTTGTTATTCTAAGTGTCAATTATTGGTTTGTCAAGACTTCTTTATGGATTGTCCTTTGAAGTATGATTTTGTGGTATAATACTGAGATTTTGCAAGGAAACATATTATTGTGGTTGTAGACAGTTATCCTATTGCTTTTATCATTGATGTTTGTATGCTCTTCAGCTCAAACTTTTTCCCTCTCTTGTTATAGGCCTCAAAGTTTTGGTATTTCTGATTTATGGCCTTTCACTCTTCAAATGTGCTCCCTATGTTCTTAAAAGATTACCACATTGTATTTTTTTGGTTAAACTTTGAAAACTTTGATTATGAATACTCATCGGGCT

mRNA sequence

ATGTTAGGCAAAGTACGTCTTGGAGATGATGTTAGCTTATTGCGCCTAAACCCTAACCCTTTCTTCTTCATAAAACCTTCGCGCCGTTCTTCTCTTGGATTCCTCTCGCTTTCTCTCTCCTCAAGCTGCAAATTCAGAATGGAGTCTCAGATCAAGCATGCTGTAGTTATTAAGTGCATGGGCCGCACCGGATCAAGGGGGCAAGTGACCCAAGTCAGAGTTAAGTTTTTGGATGACCAAAACCGTTTCATCATGAGGAACGTCAAGGGACCCGTCAGAGAGGGAGACATTCTTACCCTCCTCGAGTCTGAGAGAGAAGCTAGGAGACTTAGATGAAGTACCCGCCTTGTTGCTGAAGGCTGCAGCTATATTTCTGTTTTGGCTTCGGTTATGGTTTTTGCCTGAGTTAGATTTTGTTATTCTAAGTGTCAATTATTGGTTTGTCAAGACTTCTTTATGGATTGTCCTTTGAAGTATGATTTTGTGGTATAATACTGAGATTTTGCAAGGAAACATATTATTGTGGTTGTAGACAGTTATCCTATTGCTTTTATCATTGATGTTTGTATGCTCTTCAGCTCAAACTTTTTCCCTCTCTTGTTATAGGCCTCAAAGTTTTGGTATTTCTGATTTATGGCCTTTCACTCTTCAAATGTGCTCCCTATGTTCTTAAAAGATTACCACATTGTATTTTTTTGGTTAAACTTTGAAAACTTTGATTATGAATACTCATCGGGCT

Coding sequence (CDS)

ATGTTAGGCAAAGTACGTCTTGGAGATGATGTTAGCTTATTGCGCCTAAACCCTAACCCTTTCTTCTTCATAAAACCTTCGCGCCGTTCTTCTCTTGGATTCCTCTCGCTTTCTCTCTCCTCAAGCTGCAAATTCAGAATGGAGTCTCAGATCAAGCATGCTGTAGTTATTAAGTGCATGGGCCGCACCGGATCAAGGGGGCAAGTGACCCAAGTCAGAGTTAAGTTTTTGGATGACCAAAACCGTTTCATCATGAGGAACGTCAAGGGACCCGTCAGAGAGGGAGACATTCTTACCCTCCTCGAGTCTGAGAGAGAAGCTAGGAGACTTAGATGA

Protein sequence

MLGKVRLGDDVSLLRLNPNPFFFIKPSRRSSLGFLSLSLSSSCKFRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESEREARRLR

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo05863.1	Spo05863.1	mRNA

Homology

[Close]

BLAST of Spo05863.1 vs. NCBI nr
Match: gi|703110452|ref|XP_010099593.1| (Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis])

HSP 1 Score: 129.4 bits (324), Expect = 3.900e-27
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 1

		  
Query: 41  SSCKFRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 100
           SS + RMESQ+KHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL
Sbjct: 205 SSTRVRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 264

Query: 101 LESEREARRLR 112
           LESEREARRLR
Sbjct: 265 LESEREARRLR 275

[Close]

BLAST of Spo05863.1 vs. NCBI nr
Match: gi|731314092|ref|XP_010684187.1| (PREDICTED: 40S ribosomal protein S28 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 129.4 bits (324), Expect = 3.900e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1

		  
Query: 47  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 106
           MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 60

Query: 107 ARRLR 112
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of Spo05863.1 vs. NCBI nr
Match: gi|703132274|ref|XP_010105085.1| (40S ribosomal protein S28 [Morus notabilis])

HSP 1 Score: 128.6 bits (322), Expect = 6.600e-27
Identity = 69/86 (80.23%), Postives = 74/86 (86.05%), Query Frame = 1

		  
Query: 30  SSLGFL----SLSLSSSCKFRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIM 89
           S  GF+     LS S++   RMESQ+KHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIM
Sbjct: 70  SQTGFVIATSELSESAAKSTRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIM 129

Query: 90  RNVKGPVREGDILTLLESEREARRLR 112
           RNVKGPVREGDILTLLESEREARRLR
Sbjct: 130 RNVKGPVREGDILTLLESEREARRLR 155

[Close]

BLAST of Spo05863.1 vs. NCBI nr
Match: gi|567874751|ref|XP_006429965.1| (hypothetical protein CICLE_v10013157mg [Citrus clementina])

HSP 1 Score: 126.7 bits (317), Expect = 2.500e-26
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 1

		  
Query: 37  LSLSSSCKFRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGD 96
           LSL +S   RM+SQIKHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGD
Sbjct: 41  LSLLAS-SLRMDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGD 100

Query: 97  ILTLLESEREARRLR 112
           ILTLLESEREARRLR
Sbjct: 101 ILTLLESEREARRLR 114

[Close]

BLAST of Spo05863.1 vs. NCBI nr
Match: gi|703087605|ref|XP_010093316.1| (40S ribosomal protein S28 [Morus notabilis])

HSP 1 Score: 126.7 bits (317), Expect = 2.500e-26
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1

		  
Query: 46  RMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESER 105
           RMESQ+KHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESER
Sbjct: 21  RMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESER 80

Query: 106 EARRLR 112
           EARRLR
Sbjct: 81  EARRLR 86

[Close]

BLAST of Spo05863.1 vs. UniProtKB/TrEMBL
Match: F6HLE9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07210 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.100e-27
Identity = 77/129 (59.69%), Postives = 87/129 (67.44%), Query Frame = 1

		  
Query: 3   GKVRLGDDVSLL-----------------RLNPNPFFFIKPSRRSSLGFLSLSLSSSCKF 62
           G VR GD ++LL                 R    P FF   S  + + FLS + S + + 
Sbjct: 110 GPVREGDILTLLESEREARRLRVPLLRSRRKCSKPLFFSSSSLFAEIAFLSGNSSPASRT 169

Query: 63  ---RMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLE 112
              +MES +KHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLE
Sbjct: 170 GLCKMESGVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLE 229

[Close]

BLAST of Spo05863.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D562_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g013140 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.700e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1

		  
Query: 47  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 106
           MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 60

Query: 107 ARRLR 112
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of Spo05863.1 vs. UniProtKB/TrEMBL
Match: W9RZ99_9ROSA (Nicotinamide-nucleotide adenylyltransferase OS=Morus notabilis GN=L484_004025 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.700e-27
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 1

		  
Query: 41  SSCKFRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 100
           SS + RMESQ+KHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL
Sbjct: 205 SSTRVRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 264

Query: 101 LESEREARRLR 112
           LESEREARRLR
Sbjct: 265 LESEREARRLR 275

[Close]

BLAST of Spo05863.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBJ3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_013530 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.700e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1

		  
Query: 47  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 106
           MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 60

Query: 107 ARRLR 112
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of Spo05863.1 vs. UniProtKB/TrEMBL
Match: W9SEX7_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_012438 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.600e-27
Identity = 69/86 (80.23%), Postives = 74/86 (86.05%), Query Frame = 1

		  
Query: 30  SSLGFL----SLSLSSSCKFRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIM 89
           S  GF+     LS S++   RMESQ+KHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIM
Sbjct: 70  SQTGFVIATSELSESAAKSTRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIM 129

Query: 90  RNVKGPVREGDILTLLESEREARRLR 112
           RNVKGPVREGDILTLLESEREARRLR
Sbjct: 130 RNVKGPVREGDILTLLESEREARRLR 155

[Close]

BLAST of Spo05863.1 vs. ExPASy Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.300e-24
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1

		  
Query: 47  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 106
           M++Q+K AVV+K MGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1   MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 107 ARRLR 112
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of Spo05863.1 vs. ExPASy Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.900e-24
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1

		  
Query: 47  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 106
           M+SQIKHAVV+K MGRTGSRGQVTQVRVKF D  +RFIMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDVLTLLESERE 60

Query: 107 ARRLR 112
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of Spo05863.1 vs. ExPASy Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.500e-23
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1

		  
Query: 47  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 106
           M+SQIKHAVV+K MGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 107 ARRLR 112
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of Spo05863.1 vs. ExPASy Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.900e-19
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 1

		  
Query: 51  IKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESEREARRL 110
           IK A V K +GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 111 R 112
           R
Sbjct: 69  R 69

[Close]

BLAST of Spo05863.1 vs. ExPASy Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.900e-19
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 1

		  
Query: 51  IKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESEREARRL 110
           IK A V K +GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 111 R 112
           R
Sbjct: 69  R 69

[Close]

BLAST of Spo05863.1 vs. TAIR (Arabidopsis)
Match: AT5G64140.1 (ribosomal protein S28)

HSP 1 Score: 110.9 bits (276), Expect = 5.000e-25
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1

		  
Query: 47  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 106
           M+SQIKHAVV+K MGRTGSRGQVTQVRVKF D  +RFIMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDVLTLLESERE 60

Query: 107 ARRLR 112
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of Spo05863.1 vs. TAIR (Arabidopsis)
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 110.2 bits (274), Expect = 8.500e-25
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1

		  
Query: 47  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 106
           M+SQIKHAVV+K MGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 107 ARRLR 112
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of Spo05863.1 vs. TAIR (Arabidopsis)
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 110.2 bits (274), Expect = 8.500e-25
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1

		  
Query: 47  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 106
           M+SQIKHAVV+K MGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 107 ARRLR 112
           ARRLR
Sbjct: 61  ARRLR 64

The following BLAST results are available for this feature:

BLAST of Spo05863.1 vs. NCBI nr
BLAST of Spo05863.1 vs. UniProtKB/TrEMBL
BLAST of Spo05863.1 vs. ExPASy Swiss-Prot
BLAST of Spo05863.1 vs. TAIR (Arabidopsis)

BLAST of Spo05863.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|703110452\|ref\|XP_010099593.1\|	3.9e-27	91.5	Nicotinamide mononucleotide ad...	[more]
gi\|731314092\|ref\|XP_010684187.1\|	3.9e-27	100.	PREDICTED: 40S ribosomal prote...	[more]
gi\|703132274\|ref\|XP_010105085.1\|	6.6e-27	80.2	40S ribosomal protein S28 [Mor...	[more]
gi\|567874751\|ref\|XP_006429965.1\|	2.5e-26	89.3	hypothetical protein CICLE_v10...	[more]
gi\|703087605\|ref\|XP_010093316.1\|	2.5e-26	95.4	40S ribosomal protein S28 [Mor...	[more]

BLAST of Spo05863.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
F6HLE9_VITVI	2.1e-27	59.6	Putative uncharacterized prote...	[more]
A0A0J8D562_BETVU	2.7e-27	100.	Uncharacterized protein OS=Bet...	[more]
W9RZ99_9ROSA	2.7e-27	91.5	Nicotinamide-nucleotide adenyl...	[more]
A0A0K9RBJ3_SPIOL	2.7e-27	100.	Uncharacterized protein OS=Spi...	[more]
W9SEX7_9ROSA	4.6e-27	80.2	40S ribosomal protein S28 OS=M...	[more]

BLAST of Spo05863.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
RS28_MAIZE	2.3e-24	87.6	40S ribosomal protein S28 OS=Z...	[more]
RS282_ARATH	8.9e-24	87.6	40S ribosomal protein S28-2 OS...	[more]
RS281_ARATH	1.5e-23	87.6	40S ribosomal protein S28-1 OS...	[more]
RS28_DANRE	3.9e-19	78.6	40S ribosomal protein S28 OS=D...	[more]
RS28_ICTPU	3.9e-19	78.6	40S ribosomal protein S28 OS=I...	[more]

BLAST of Spo05863.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3

Position :

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Match Name	E-value	Identity	Description
AT5G64140.1	5.0e-25	87.6	ribosomal protein S28	[more]
AT3G10090.1	8.5e-25	87.6	Nucleic acid-binding, OB-fold-...	[more]
AT5G03850.1	8.5e-25	87.6	Nucleic acid-binding, OB-fold-...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000289	Ribosomal protein S28e	PRODOM	PD005541		coord: 47..92 score: 1.0
IPR000289	Ribosomal protein S28e	HAMAP	MF_00292	Ribosomal_S28e	coord: 47..111 score: 20
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 47..111 score: 9.5
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 50..110 score: 1.8
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	2.40.50.140		coord: 47..111 score: 9.9
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 47..111 score: 1.54

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006412	translation
biological_process	GO:0006529	asparagine biosynthetic process
biological_process	GO:0006531	aspartate metabolic process
biological_process	GO:0006536	glutamate metabolic process
biological_process	GO:0006541	glutamine metabolic process
biological_process	GO:0006177	GMP biosynthetic process
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006333	chromatin assembly or disassembly
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0009097	isoleucine biosynthetic process
biological_process	GO:0009098	leucine biosynthetic process
biological_process	GO:0006090	pyruvate metabolic process
biological_process	GO:0009099	valine biosynthetic process
biological_process	GO:0006260	DNA replication
biological_process	GO:0006522	alanine metabolic process
biological_process	GO:0006399	tRNA metabolic process
biological_process	GO:0006855	drug transmembrane transport
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0008152	metabolic process
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0009536	plastid
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003852	2-isopropylmalate synthase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0016462	pyrophosphatase activity
molecular_function	GO:0003922	GMP synthase (glutamine-hydrolyzing) activity
molecular_function	GO:0004066	asparagine synthase (glutamine-hydrolyzing) activity
molecular_function	GO:0015297	antiporter activity
molecular_function	GO:0015238	drug transmembrane transporter activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo26803	0.77	Barchart \| Table
Spo03708	0.73	Barchart \| Table
Spo15363	0.73	Barchart \| Table
Spo13707	0.73	Barchart \| Table
Spo19401	0.73	Barchart \| Table
Spo14353	0.73	Barchart \| Table
Spo05607	0.72	Barchart \| Table
Spo02189	0.72	Barchart \| Table
Spo05547	0.72	Barchart \| Table
Spo00568	0.72	Barchart \| Table
Spo06172	0.71	Barchart \| Table
Spo21619	0.71	Barchart \| Table
Spo04453	0.71	Barchart \| Table
Spo02472	0.70	Barchart \| Table
Spo09493	0.70	Barchart \| Table
Spo01970	0.70	Barchart \| Table
Spo18304	0.70	Barchart \| Table
Spo19500	0.70	Barchart \| Table
Spo25615	0.70	Barchart \| Table
Spo12391	0.69	Barchart \| Table
Spo00780	0.69	Barchart \| Table
Spo22520	0.69	Barchart \| Table
Spo22326	0.69	Barchart \| Table
Spo26636	0.69	Barchart \| Table
Spo23345	0.68	Barchart \| Table
Spo06455	0.68	Barchart \| Table
Spo21531	0.68	Barchart \| Table
Spo00501	0.68	Barchart \| Table
Spo12143	0.68	Barchart \| Table
Spo17114	0.68	Barchart \| Table
Spo18907	0.68	Barchart \| Table
Spo00170	0.68	Barchart \| Table
Spo14013	0.68	Barchart \| Table
Spo00554	0.68	Barchart \| Table
Spo25123	0.67	Barchart \| Table
Spo00702	0.67	Barchart \| Table
Spo03105	0.67	Barchart \| Table
Spo08451	0.67	Barchart \| Table
Spo17017	0.67	Barchart \| Table
Spo17219	0.67	Barchart \| Table
Spo18942	0.67	Barchart \| Table
Spo19833	0.67	Barchart \| Table
Spo22654	0.67	Barchart \| Table
Spo23898	0.67	Barchart \| Table
Spo25915	0.67	Barchart \| Table
Spo26850	0.67	Barchart \| Table
Spo16568	0.66	Barchart \| Table
Spo12291	0.66	Barchart \| Table
Spo09353	0.66	Barchart \| Table
Spo22410	0.66	Barchart \| Table
Spo00759	0.66	Barchart \| Table
Spo24366	0.66	Barchart \| Table
Spo25451	0.66	Barchart \| Table
Spo02181	0.66	Barchart \| Table
Spo17110	0.66	Barchart \| Table
Spo16686	0.66	Barchart \| Table
Spo17124	0.66	Barchart \| Table
Spo17135	0.66	Barchart \| Table
Spo26851	0.66	Barchart \| Table
Spo26195	0.66	Barchart \| Table
Spo19325	0.66	Barchart \| Table
Spo12071	0.66	Barchart \| Table
Spo02001	0.66	Barchart \| Table
Spo20614	0.66	Barchart \| Table
Spo21289	0.66	Barchart \| Table
Spo18908	0.65	Barchart \| Table
Spo05230	0.65	Barchart \| Table
Spo07955	0.65	Barchart \| Table
Spo12196	0.65	Barchart \| Table
Spo17496	0.65	Barchart \| Table
Spo07794	0.65	Barchart \| Table
Spo26979	0.65	Barchart \| Table
Spo16884	0.65	Barchart \| Table
Spo10702	0.65	Barchart \| Table
Spo24440	0.65	Barchart \| Table
Spo08589	0.65	Barchart \| Table