Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTCAAGCTATGGCTTCAATGGCTGGATTACGCGGCGCATCACAAGCTGTATTGGAAGGTAGTCTCCAGATCAGCGGCTCAAACCGGCTTAGTGGGCCTACTACGAGCCGTGTTGCTGTCCCGAAAATGGGCTTAAACATCCGAGCTCAGCAAGTGTCAGCTGAGGCTGAGACTAGCCGCCGAGCTATGTTGGGCTTCGTCGCAGCTGGTTTGGCTTCTGGTTCGTTTGTTAAGGCTGTTCTTGCTGAGGCCAGGCCCATCGTTGTTGGCCCACCACCACCACTATCCGGTGGTCTTCGTAAGTGTTCATCCCCATTTAATCTTATGTATCTTCAACAGTTCTAGCATTCAACTAGCGTACAATAAATTGATTGTATATCGGATAATTTAATCAATTTTTTGGTAACTTCTAACATAACTTTTTATTGTATACCGGGTGTAATTAAGAATTTGTGAAGTCTCGTTTTATCTTTTATGCTTTTTACTCCATCCGTACCTAAATGTTTTTCTCATTTGCCATTTTACGCGGTAATTAAGAAGAAAGGAAACTAAACAACATTGAGAATTGATATGCACTTATCGTTGTATTTTATGGGGAGTTTTGTCTTTTCTAATTTTTTAACAAGAAAACAAAACAACTTTTAGAGTTTCGACTTGTGAGAGTCGATAGAATTTAAGGAATTAAAGTGTCAACTCATCAATCCATCAACACTTAAACTAACCAATGAGATTACATGATTTTATATTGATAAACCAATAAAATTACAAGGCTAAAAAGGAAATAAAACAAATGAGAATATCTTTTTAAAATACTTAAAAAGGAAATGAGAAAAACATTTAGGTGCGGAGAAAGTAGTTTTGTACGTGTATGGTATCTCTTATGTAATAGGAGTTTTGAAATTTTAGTACATTGGATGGTAATGAAACAAGCATGATCAAGCGGGGAAGTTGACCCGTGAGTGATTTGGTTCAGGTCCAGTAGGATCTTTCATCTTACTTACCTAAAAATAAAATTAATCCAGCGGCGAACATCATTAGAGAAGCTAGAAATAACATGTATGGAGTAGTCGACTATATTATACCATTGATGCTTTATAGGTGACACACAAGTACACAACACAAACAATGTGCATAAATATATGTAAAAAAAACATTTAGTGTTGCGTTTAACATTTTCCTAAATATTTTATTTTACGTGGTGAGCAGCCGGAACAGAAAACTCGGACCAAGCAAGAGACGGTACCTTGCCTTACACCAAGGACAGGTTCTACCTTCAACCTCTGCCTCCTACTGAGGCAGCCCAAAGAGCAAAAGTATCCGCCTCTGAAATCCTCAACGTGAAGCAATTCATCGACAGGAAGGCATGGCCATCTCTACAGAATGACTTACGTCTTAGGGCGTCATACCTTCGTTATGACCTCAAGACTGTCATCTCTGCTAAGCCTAAGGATGAGAAGAAATCACTCCAAGAACTCACTAGCAAGCTCTTCAGCAGTATCGACAATGTGAGTCACTCTTTATAATCTGTATTTGGTCGTTTTGGTTATCAATTTGAAACTTCCATTCTTGGAAGTTTGGACCGATCAACTATAGTCTGGCCCGCTGGCCCAGACCCAAACAGCCCGAAAATGTGTGGGTATGGAAAGCCTCAAATATGCATTTTAACTCAAAGCCCGAAAGAAACTTGTTTCGGCCAGAAAAACCCACACCAAATGGGTTTGGGCATGAGTTTTTGTGTTAAAACCCGGTCCAGCCCGAATTTTGATCAACTCTTATACATCCCCCGTTTCACTAGAGGTGATCAAAATTCGGGTCGGGTCTGGTCGGGCTTTAACACAAAAAAATCATGCCCAAACCCATGTATTTGGTGCTGGCTTTTCAGACCGTAATGGGTATTCGGACTTTTTCGGGACGGGTTCGAGTTTTTGGTCTAAATGCATATTTGAGGTTGCTCAAACCCGTACTTTTTTTGGTCGGGCCATAGATGATCAGGTCTATATCGCACCATTGATTTTTTTACACTATTCACACTACGATTTTGGTCATTTTGTGTGATTCATACATAAGAAAATTGTAGTTATGTGGGGTTATGTTAGATTCGTATCGATATATATATTCTAAATATCAATTTTTTTATAATTTTTACTTACACGTAATTTGAGATTTTCAAGGTAATGGGTTAGAGGGAAAAAAGTGAACCATGTTGCGATATTTATGAGATGGGTAAAGAGGTAAAGTATTATTCAGTCAAAACAAGTAAACAACCTCCTCGCTAATGAGTTTTCGTTGTTTTCATTGTGTAACAGTTGGACCATGCTGCAAAGATAAAGAGCCCTACCGAGGCAGAGAAATACTACGGTCAGACTGTATCCAACATCAATGAAGTTCTTGCCAAGCTCGGTTAA ATGGCTCAAGCTATGGCTTCAATGGCTGGATTACGCGGCGCATCACAAGCTGTATTGGAAGGTAGTCTCCAGATCAGCGGCTCAAACCGGCTTAGTGGGCCTACTACGAGCCGTGTTGCTGTCCCGAAAATGGGCTTAAACATCCGAGCTCAGCAAGTGTCAGCTGAGGCTGAGACTAGCCGCCGAGCTATGTTGGGCTTCGTCGCAGCTGGTTTGGCTTCTGGTTCGTTTGTTAAGGCTGTTCTTGCTGAGGCCAGGCCCATCGTTGTTGGCCCACCACCACCACTATCCGGTGGTCTTCCCGGAACAGAAAACTCGGACCAAGCAAGAGACGGTACCTTGCCTTACACCAAGGACAGGTTCTACCTTCAACCTCTGCCTCCTACTGAGGCAGCCCAAAGAGCAAAAGTATCCGCCTCTGAAATCCTCAACGTGAAGCAATTCATCGACAGGAAGGCATGGCCATCTCTACAGAATGACTTACGTCTTAGGGCGTCATACCTTCGTTATGACCTCAAGACTGTCATCTCTGCTAAGCCTAAGGATGAGAAGAAATCACTCCAAGAACTCACTAGCAAGCTCTTCAGCAGTATCGACAATTTGGACCATGCTGCAAAGATAAAGAGCCCTACCGAGGCAGAGAAATACTACGGTCAGACTGTATCCAACATCAATGAAGTTCTTGCCAAGCTCGGTTAA ATGGCTCAAGCTATGGCTTCAATGGCTGGATTACGCGGCGCATCACAAGCTGTATTGGAAGGTAGTCTCCAGATCAGCGGCTCAAACCGGCTTAGTGGGCCTACTACGAGCCGTGTTGCTGTCCCGAAAATGGGCTTAAACATCCGAGCTCAGCAAGTGTCAGCTGAGGCTGAGACTAGCCGCCGAGCTATGTTGGGCTTCGTCGCAGCTGGTTTGGCTTCTGGTTCGTTTGTTAAGGCTGTTCTTGCTGAGGCCAGGCCCATCGTTGTTGGCCCACCACCACCACTATCCGGTGGTCTTCCCGGAACAGAAAACTCGGACCAAGCAAGAGACGGTACCTTGCCTTACACCAAGGACAGGTTCTACCTTCAACCTCTGCCTCCTACTGAGGCAGCCCAAAGAGCAAAAGTATCCGCCTCTGAAATCCTCAACGTGAAGCAATTCATCGACAGGAAGGCATGGCCATCTCTACAGAATGACTTACGTCTTAGGGCGTCATACCTTCGTTATGACCTCAAGACTGTCATCTCTGCTAAGCCTAAGGATGAGAAGAAATCACTCCAAGAACTCACTAGCAAGCTCTTCAGCAGTATCGACAATTTGGACCATGCTGCAAAGATAAAGAGCCCTACCGAGGCAGAGAAATACTACGGTCAGACTGTATCCAACATCAATGAAGTTCTTGCCAAGCTCGGTTAA MAQAMASMAGLRGASQAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAEAETSRRAMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo19731.1 vs. NCBI nr
Match: gi|131397|sp|P12301.1|PSBQ_SPIOL (RecName: Full=Oxygen-evolving enhancer protein 3, chloroplastic; Short=OEE3; AltName: Full=16 kDa subunit of oxygen evolving system of photosystem II; AltName: Full=OEC 16 kDa subunit; Flags: Precursor) HSP 1 Score: 437.6 bits (1124), Expect = 1.400e-119 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1
BLAST of Spo19731.1 vs. NCBI nr
Match: gi|731351236|ref|XP_010686934.1| (PREDICTED: oxygen-evolving enhancer protein 3, chloroplastic-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 366.7 bits (940), Expect = 3.000e-98 Identity = 196/233 (84.12%), Postives = 211/233 (90.56%), Query Frame = 1
BLAST of Spo19731.1 vs. NCBI nr
Match: gi|146345327|gb|ABQ23675.1| (photosynthetic oxygen-evolving protein 16 kDa subunit [Salicornia veneta]) HSP 1 Score: 335.1 bits (858), Expect = 9.700e-89 Identity = 177/236 (75.00%), Postives = 206/236 (87.29%), Query Frame = 1
BLAST of Spo19731.1 vs. NCBI nr
Match: gi|197691943|dbj|BAG70023.1| (16 kDa precursor protein of the oxygen-evolving complex [Salicornia europaea]) HSP 1 Score: 333.6 bits (854), Expect = 2.800e-88 Identity = 176/236 (74.58%), Postives = 205/236 (86.86%), Query Frame = 1
BLAST of Spo19731.1 vs. NCBI nr
Match: gi|645236730|ref|XP_008224877.1| (PREDICTED: oxygen-evolving enhancer protein 3, chloroplastic [Prunus mume]) HSP 1 Score: 316.2 bits (809), Expect = 4.700e-83 Identity = 173/233 (74.25%), Postives = 197/233 (84.55%), Query Frame = 1
BLAST of Spo19731.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QRK4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_156430 PE=4 SV=1) HSP 1 Score: 437.6 bits (1124), Expect = 9.600e-120 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1
BLAST of Spo19731.1 vs. UniProtKB/TrEMBL
Match: A0A0J8ELT3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g186680 PE=4 SV=1) HSP 1 Score: 366.7 bits (940), Expect = 2.100e-98 Identity = 196/233 (84.12%), Postives = 211/233 (90.56%), Query Frame = 1
BLAST of Spo19731.1 vs. UniProtKB/TrEMBL
Match: B0L6Y3_9CARY (Photosynthetic oxygen-evolving protein 16 kDa subunit OS=Salicornia veneta GN=psbQ PE=2 SV=1) HSP 1 Score: 335.1 bits (858), Expect = 6.700e-89 Identity = 177/236 (75.00%), Postives = 206/236 (87.29%), Query Frame = 1
BLAST of Spo19731.1 vs. UniProtKB/TrEMBL
Match: B5BT08_SALEU (16 kDa protein of the oxygen-evolving complex OS=Salicornia europaea GN=OEE3 PE=2 SV=1) HSP 1 Score: 333.6 bits (854), Expect = 2.000e-88 Identity = 176/236 (74.58%), Postives = 205/236 (86.86%), Query Frame = 1
BLAST of Spo19731.1 vs. UniProtKB/TrEMBL
Match: A0A067GJW2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026780mg PE=4 SV=1) HSP 1 Score: 314.7 bits (805), Expect = 9.400e-83 Identity = 168/234 (71.79%), Postives = 196/234 (83.76%), Query Frame = 1
BLAST of Spo19731.1 vs. ExPASy Swiss-Prot
Match: PSBQ_SPIOL (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1) HSP 1 Score: 437.6 bits (1124), Expect = 8.700e-122 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1
BLAST of Spo19731.1 vs. ExPASy Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2) HSP 1 Score: 296.2 bits (757), Expect = 3.100e-79 Identity = 167/234 (71.37%), Postives = 195/234 (83.33%), Query Frame = 1
BLAST of Spo19731.1 vs. ExPASy Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3) HSP 1 Score: 283.1 bits (723), Expect = 2.700e-75 Identity = 161/230 (70.00%), Postives = 189/230 (82.17%), Query Frame = 1
BLAST of Spo19731.1 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2) HSP 1 Score: 244.6 bits (623), Expect = 1.100e-63 Identity = 140/233 (60.09%), Postives = 171/233 (73.39%), Query Frame = 1
BLAST of Spo19731.1 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSJ (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1) HSP 1 Score: 244.6 bits (623), Expect = 1.100e-63 Identity = 140/233 (60.09%), Postives = 171/233 (73.39%), Query Frame = 1
BLAST of Spo19731.1 vs. TAIR (Arabidopsis)
Match: AT4G05180.1 (photosystem II subunit Q-2) HSP 1 Score: 296.2 bits (757), Expect = 1.800e-80 Identity = 167/234 (71.37%), Postives = 195/234 (83.33%), Query Frame = 1
BLAST of Spo19731.1 vs. TAIR (Arabidopsis)
Match: AT4G21280.2 (photosystem II subunit QA) HSP 1 Score: 283.1 bits (723), Expect = 1.500e-76 Identity = 161/230 (70.00%), Postives = 189/230 (82.17%), Query Frame = 1
BLAST of Spo19731.1 vs. TAIR (Arabidopsis)
Match: AT3G01440.1 (PsbQ-like 1) HSP 1 Score: 62.0 bits (149), Expect = 5.600e-10 Identity = 49/176 (27.84%), Postives = 85/176 (48.30%), Query Frame = 1
BLAST of Spo19731.1 vs. TAIR (Arabidopsis)
Match: AT2G01918.1 (PsbQ-like 3) HSP 1 Score: 54.3 bits (129), Expect = 1.200e-7 Identity = 32/110 (29.09%), Postives = 59/110 (53.64%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo19731.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo19731.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo19731.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo19731.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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