Spo07174.1 (mRNA)

Overview
NameSpo07174.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00419 : 7372 .. 8521 (-)
Sequence length668
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAACTTCTTACCGTAGATTGACTCGCCGCCAGTGTCATTTCCATGCGGTGAAATCACCTCCTTGGCTCATGAATCCGGGATCACACGGTGGAAGGCGGAGCCCTTGGAGTGGGGTGACTTTCCCCTGCGGCCGTTGCCCTTCTATCCGGTGCCGAGTGCGGGGAATTTCTCGGCGGTTTTGGGAACAACACCGGCGTACAACTCCATGACGATTCTTCCGGCAGGTTGGTCGCCAACAGCCATGTCAAAGAAGACCTTTGGGTTCGCCGCTTCACGGATCCACCTCGCCTCAATCTCTTGGTAGTCTCCTTCAGCCCTTCTCCTATTATCCTTCCCGGCTTCATCAAAGGTATTGATAATCTCTTACTCTTAATTTTTGTTCAATTCATTATTTGTTTGTTTTATTTTCATGGATTTATTATTCGAATTTTGATGGGTTTATTATTCGATTTTTTGATCAACTTTTGGTGATTATTTTTTATCGATTTTTGGTGATTATTTTTGCTCGAAGTTAGGTGATTATTTTTGCTCGAAGTTAGGTGATGATTTTTGCTCGAATGTAGGTTTTTTTTTTTCCAGTGATTTATGTTCGAATTTAGTGATTTATTACTCGAATTCAGGTTAATTTCGGCTCGAATGATTAGTGACTTTTCTCGAATTTGGTGATTATTATTTTCATGGATTTTCAGTGATTCACGCCTTTACGGTTCCAATTTGAGTGATTTAATTGTTTGAAATTTCTGTTTTTGCTCGAATTTTCAGTGATTTATTAGATCGAGCTATCAAGGATTCGAGATTTCGAGCTGCTGCTTGTTGAGTTGCTGACGTGCTGCTGGATGCTTGCTTAGTTGCTGGACGTGCTGCTTGCTGAGTTGCTGCTGGCTGCTGCTGTTAATTGAATTACAGAGATTCAGAATTTTAGACCTGTTGTTATTCCTGCAATGTTGTTATTCGACTTTGATAAATAAATTTAAGACTTTAATCTTTGGTGTATTAATTTGTAAGAATTAATTCAAAGTTGGATTAATTTGTTTTTGAAGACTTGAAGTCTAATTTTAATTACAGTTCTTAGTTTAATGGTTAATTTGTGTTTGTTGGTGGGCCAGATATTGACTTAAAGCAGGTACAATACAATATAGGCCCAAA

mRNA sequence

ATGAGAACTTCTTACCGTAGATTGACTCGCCGCCAGTGTCATTTCCATGCGGTGAAATCACCTCCTTGGCTCATGAATCCGGGATCACACGGTGGAAGGCGGAGCCCTTGGAGTGGGGTGACTTTCCCCTGCGGCCGTTGCCCTTCTATCCGGTGCCGAGTTGGTCGCCAACAGCCATGTCAAAGAAGACCTTTGGGTTCGCCGCTTCACGGATCCACCTCGCCTCAATCTCTTGGTAGTCTCCTTCAGCCCTTCTCCTATTATCCTTCCCGGCTTCATCAAAGTGATTTATTAGATCGAGCTATCAAGGATTCGAGATTTCGAGCTGCTGCTTGTTGAGTTGCTGACGTGCTGCTGGATGCTTGCTTAGTTGCTGGACGTGCTGCTTGCTGAGTTGCTGCTGGCTGCTGCTGTTAATTGAATTACAGAGATTCAGAATTTTAGACCTGTTGTTATTCCTGCAATGTTGTTATTCGACTTTGATAAATAAATTTAAGACTTTAATCTTTGGTGTATTAATTTGTAAGAATTAATTCAAAGTTGGATTAATTTGTTTTTGAAGACTTGAAGTCTAATTTTAATTACAGTTCTTAGTTTAATGGTTAATTTGTGTTTGTTGGTGGGCCAGATATTGACTTAAAGCAGGTACAATACAATATAGGCCCAAA

Coding sequence (CDS)

ATGAGAACTTCTTACCGTAGATTGACTCGCCGCCAGTGTCATTTCCATGCGGTGAAATCACCTCCTTGGCTCATGAATCCGGGATCACACGGTGGAAGGCGGAGCCCTTGGAGTGGGGTGACTTTCCCCTGCGGCCGTTGCCCTTCTATCCGGTGCCGAGTTGGTCGCCAACAGCCATGTCAAAGAAGACCTTTGGGTTCGCCGCTTCACGGATCCACCTCGCCTCAATCTCTTGGTAGTCTCCTTCAGCCCTTCTCCTATTATCCTTCCCGGCTTCATCAAAGTGATTTATTAGATCGAGCTATCAAGGATTCGAGATTTCGAGCTGCTGCTTGTTGA

Protein sequence

MRTSYRRLTRRQCHFHAVKSPPWLMNPGSHGGRRSPWSGVTFPCGRCPSIRCRVGRQQPCQRRPLGSPLHGSTSPQSLGSLLQPFSYYPSRLHQSDLLDRAIKDSRFRAAAC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo07174Spo07174gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo07174.1Spo07174.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07174.1.CDS.3Spo07174.1.CDS.3CDS
Spo07174.1.CDS.2Spo07174.1.CDS.2CDS
Spo07174.1.CDS.1Spo07174.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07174.1.utr3p.1Spo07174.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07174.1.exon.3Spo07174.1.exon.3exon
Spo07174.1.exon.2Spo07174.1.exon.2exon
Spo07174.1.exon.1Spo07174.1.exon.1exon


Homology
[Close]
BLAST of Spo07174.1 vs. NCBI nr
Match: gi|902210381|gb|KNA16412.1| (hypothetical protein SOVF_089390 [Spinacia oleracea])

HSP 1 Score: 126.3 bits (316), Expect = 3.300e-26
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 

		  

Query: 1  MRTSYRRLTRRQCHFHAVKSPPWLMNPGSHGGRRSPWSGVTFPCGRCPSIRCRV 55
          MRTSYRRLTRRQCHFHAVKSPPWLMNPGSHGGRRSPWSGVTFPCGRCPSIRCRV
Sbjct: 1  MRTSYRRLTRRQCHFHAVKSPPWLMNPGSHGGRRSPWSGVTFPCGRCPSIRCRV 54
[Close]
BLAST of Spo07174.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RC75_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_089390 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.300e-26
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 

		  

Query: 1  MRTSYRRLTRRQCHFHAVKSPPWLMNPGSHGGRRSPWSGVTFPCGRCPSIRCRV 55
          MRTSYRRLTRRQCHFHAVKSPPWLMNPGSHGGRRSPWSGVTFPCGRCPSIRCRV
Sbjct: 1  MRTSYRRLTRRQCHFHAVKSPPWLMNPGSHGGRRSPWSGVTFPCGRCPSIRCRV 54
The following BLAST results are available for this feature:
BLAST of Spo07174.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902210381|gb|KNA16412.1|3.3e-26100.hypothetical protein SOVF_0893... [more]
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BLAST of Spo07174.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RC75_SPIOL2.3e-26100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo07174.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo07174.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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