Spo25307 (gene) | SpinachBase

Overview


Name	Spo25307
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	ELF4-like protein
Location	chr2 : 6189879 .. 6193289 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTAACAAGTGAGTATTCCGTATGGATATTAGGGATATCAATTTAAACTTATATTGATTGTTTTCAAAATTCATGTCTTGTCTAATAAGATCATTTTCAACTTTTTCATATTGAAACTTATTGCAACTTATCTGAATTTATCTGAACTTATTGAAAATTATCTAAACTTATCTGAACTTATAGGAGTTGAAAATAAAGTCTTATAAGTTGAAGAAAACAAGGTCATACACTCTCTACAAATATGACTTCACGAGTCATATAAACATTTTCGAAATTGATTTTGACACACCTTTATGTGAACATAGCAAAGTGGATTTAAGACTTGGATATGTTGAGTAAAATAAAAATCGGCATCTCCTTGACATATCATTCATTCATTCATGGTAGATCTAAGTAGGAAATCCAAAGTATAATATCCTCTTGATTGGATAAAGATTATCATAGGAAAGAGCCCAACACATATTTAGTGGACCCGAATATTGATGGCTTAGTACCTCACATAGCATTTAGGATTTACGAAACTGTCCAAACTAACTCAACAAATGTGTTTTTAAAACCACCTCTGTCCTCAGATCTGGATGAAATCATCAAACTATTTCCCACCAATTAAATACTTTATCTCATTTTTCTAAATGACACAATTATTTAGATATGTTAGCCAATGCACAATTTTGAATACTAACATCTTTTATTATGGATAGAAAAAATTATAAAAAATTGATATCTCAAAAACATTTATTGGACGAATCTAATAATATCCCACACGACTATGTTTTTTCCTATGTATAAGTCACAAGAGGAAGTCAAATGAGCTCGTATGAATTGTATCAAAAACTAAATTGTTTCATGTAAATAAGAACAGAGGAAGTAGTCTCAAACCAAAATATACGAAGTAACATTTTTCATAAAATAAATTAAGGTCAATTATAAAATGGTGGAAATTCTTATATGCACCCGAATGCATTATAATACTGAACTCAAGAGTATATATATACATGAGTTGTAAACTCTTTTAATGAATATTTTTCGGTCGTTTAAGACTTTCAAATGAGCATAAGTATACTTCTGATTGTGCATATCTATAGCATTCGGAGGCATTTTATCGTTAAAACATTTACACTCGATGTATAATTAAAGTGGTGATTTATTTACTAAAAAATCAATTCCGTAAAAATAAACTTGTGTGTTCATGATAATTAAAAATCATAGAAATTCTTATATGCACCCAATTCACCGTTGAATTGCATCTAATTGTATATGTACACATGTGCGTTTTTCTATAAAAATGCAACGAATAATATCCGCTTATTTAAAAGTAAAAAATATTAAAAAAATAAGCAGAAATATAGATTATGATAAAAATAACTGTCATTTTCAATTCTCACATTTCATATTCATTTTTCTCTGTTAGTTTTTCTAAAATTATTTTTATGCATAAGCAGTATAACACACCCGGTTTACTAGAGCTTAACTCTAACTATATCCGGATCCGATACATGTTCCACACCTTACTACTCCGTATTTATAATGGGTCAGTCTTCCAACTAGAGTTTCTGCATACGAAAATGCTCAAATCTGAAACCCCCTAAACGACATCAAACTGCTTACAACAAATCCAAAACCTTTATTTTTTTTTTCCATTATATTCGGATTCAATTCTAAAATATATAAATAGTGTAAAATACACAAACGTTGCTGAGTATTAAAAATTCGGAGAAAGTGTAATAAATTTTCGTGAATAATTTTTCCTTAAAAGATCTCCTCCGTAAAATTTATAAAAAGAGGAGAGAGAAAGATCAACATTTTAGACAGCAGCGTGAGCGTGACTATCAAATCTTCATATTCTCTCTCCTTTCTCTCCCTCTTTTTTTTTCTTTTTTATTTTTTTTTATTTTAATACAAAATACATCTTCTGTTCTTCTTTCCGTCTTCTCCAAATTCACATCTACTGAAAGAAAGAGGAGCGTTCTTCTGATTTCAAGAATCAAAGTTTTCCCAAGAAAATCGAATTCCAGAGGTAAAATCACTCAATTTCTCTCATTTACTTAACTATTTTCGATTTCTAATTTTTAATCAATTTTGCTTAATTTAACCCACTAATTGTACTACGGCCGTATGAATTATTATTATTATTGTTCGTAGATTACAGAATTTGTAATTTCGCGTCATTGACTACATACAAATACCTATTATTACATACAAGTTTGATGGAGATTCTTTGTTTTGAAACTGTGAAAAACTTTAGGTGGGTTTTTCAGAGTACATTTGACAAAAGGTTCCCTTTTATGGAAAATGGGATCTGCTTTTCACATCTCATCATACCCAAAAAAACAGAAAAAGAATTTATAATTATCACAACAGTTAATTTTTTTTTCATCTCCCCCCAGTAATCCAAATTTACCTTGTCCTTGGTTTTCAGGATTATAAACAAATAAATTAAGATTATGATTTTGGTTTGTCTTACCTCTATTTGATGGGTTTTTATGGATTGGGGGCGAAATAATGAGGTTTTGTTGTCGTAATTATGGATTCCATATATGACTAAGGTTTGTTAAGATTGTGATTATACTCAAACCTCGATATGGGTAAGGTTTGTTGGTTAAGATAGTGATATTTTGTCCTGTAATTATGGATTCGAACCTCTGTCTATATGAGTAAGGTTTTGTTTGTTAAGATTGTGAATATATTAATATATTCAAACCTCGATATGAATAAGGTTTTGTTTGGTTAAGATTGTGAATTTATGTGGTAATTATGGATTCGGACTCGATTTAGCATTGTTAAGATTGTGATTATATTCAAACCTTGATATGAGTAAGGTTTTGTTTGTTAAGATTGTGAATTTATGTCGTAATTATGGATTCTGGCTCGATTTAGCATTGTTAAGATTGTGAATTTACTACTTTTAACCTATTCCTACCTAATGAATTATGTGTTTTTTCTTTCATTTTCGGAATCTGTTTGGCAGTTTGGTGAAAGGACAATTGGAATTGGAATTGGAATTGGAGTTGGAATTGGAACTGGAATTAGAACTGGAAAAGGGGGGAAATTGATTCTAAAAATGGAAGGTGACACATTTTCAGGACTAGGAAATGGTACACAGATAGACAGTAAAGTATTGCAGACATTTCAGAAGAGTTTTGTGCAAGTTCAGAGCATATTGGATCAAAACAGATTGCTAATCAATGAGATCAACCAAAACCATGAATCAAGAATTCCTGATAATCTTTCCAGAAATGTGGGATTAATAAGGGAGCTTAACAATAACATCAGAAGAGTTGTTGATCTTTATTCTGATCTTTCTCATTCCTTAACAAGATCCATGGAAGCATCATCCGAAGGCGATTCAAGTGGCGTTCTAAAATCCGATGCCAAAGCTACCCACAAGAGAAATCGGCCCGGTTAG

mRNA sequence

ATGAGAGTAACAAAATCAAAGTTTTCCCAAGAAAATCGAATTCCAGAGTTTGGTGAAAGGACAATTGGAATTGGAATTGGAATTGGAGTTGGAATTGGAACTGGAATTAGAACTGGAAAAGGGGGGAAATTGATTCTAAAAATGGAAGGTGACACATTTTCAGGACTAGGAAATGGTACACAGATAGACAGTAAAGTATTGCAGACATTTCAGAAGAGTTTTGTGCAAGTTCAGAGCATATTGGATCAAAACAGATTGCTAATCAATGAGATCAACCAAAACCATGAATCAAGAATTCCTGATAATCTTTCCAGAAATGTGGGATTAATAAGGGAGCTTAACAATAACATCAGAAGAGTTGTTGATCTTTATTCTGATCTTTCTCATTCCTTAACAAGATCCATGGAAGCATCATCCGAAGGCGATTCAAGTGGCGTTCTAAAATCCGATGCCAAAGCTACCCACAAGAGAAATCGGCCCGGTTAG

Coding sequence (CDS)

ATGAGAGTAACAAAATCAAAGTTTTCCCAAGAAAATCGAATTCCAGAGTTTGGTGAAAGGACAATTGGAATTGGAATTGGAATTGGAGTTGGAATTGGAACTGGAATTAGAACTGGAAAAGGGGGGAAATTGATTCTAAAAATGGAAGGTGACACATTTTCAGGACTAGGAAATGGTACACAGATAGACAGTAAAGTATTGCAGACATTTCAGAAGAGTTTTGTGCAAGTTCAGAGCATATTGGATCAAAACAGATTGCTAATCAATGAGATCAACCAAAACCATGAATCAAGAATTCCTGATAATCTTTCCAGAAATGTGGGATTAATAAGGGAGCTTAACAATAACATCAGAAGAGTTGTTGATCTTTATTCTGATCTTTCTCATTCCTTAACAAGATCCATGGAAGCATCATCCGAAGGCGATTCAAGTGGCGTTCTAAAATCCGATGCCAAAGCTACCCACAAGAGAAATCGGCCCGGTTAG

Protein sequence

MRVTKSKFSQENRIPEFGERTIGIGIGIGVGIGTGIRTGKGGKLILKMEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNVGLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATHKRNRPG

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo25307.1	Spo25307.1	mRNA

Homology

[Close]

BLAST of Spo25307.1 vs. NCBI nr
Match: gi|902213959|gb|KNA17377.1| (hypothetical protein SOVF_080550 [Spinacia oleracea])

HSP 1 Score: 217.2 bits (552), Expect = 2.000e-53
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


		  
Query: 48  MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV 107
           MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV
Sbjct: 1   MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV 60

Query: 108 GLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATHKRNRPG 162
           GLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATHKRNRPG
Sbjct: 61  GLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATHKRNRPG 114

[Close]

BLAST of Spo25307.1 vs. NCBI nr
Match: gi|731377917|ref|XP_010668016.1| (PREDICTED: protein ELF4-LIKE 4 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 213.0 bits (541), Expect = 3.800e-52
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 1


		  
Query: 48  MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV 107
           MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV
Sbjct: 1   MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV 60

Query: 108 GLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATHKRNRPG 162
           GLIRELNNNIRRVVDLY DLSH+LTRSMEASSEGDSSG LKSDAKATHKRNRPG
Sbjct: 61  GLIRELNNNIRRVVDLYGDLSHTLTRSMEASSEGDSSGALKSDAKATHKRNRPG 114

[Close]

BLAST of Spo25307.1 vs. NCBI nr
Match: gi|802628260|ref|XP_012077023.1| (PREDICTED: protein ELF4-LIKE 4 [Jatropha curcas])

HSP 1 Score: 197.6 bits (501), Expect = 1.700e-47
Identity = 102/113 (90.27%), Postives = 108/113 (95.58%), Query Frame = 1


		  
Query: 48  MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV 107
           MEGDTFSGLGNGTQIDSK+LQTFQK+FVQVQ ILDQNRLLINEINQNHES+IPDNLSRNV
Sbjct: 1   MEGDTFSGLGNGTQIDSKILQTFQKNFVQVQHILDQNRLLINEINQNHESKIPDNLSRNV 60

Query: 108 GLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATHKRNRP 161
           GLIRELNNNIRRVVDLY+DLS S T+S+EASSEGDSSGVLKSD KA HKRNRP
Sbjct: 61  GLIRELNNNIRRVVDLYADLSSSFTKSIEASSEGDSSGVLKSDGKAGHKRNRP 113

[Close]

BLAST of Spo25307.1 vs. NCBI nr
Match: gi|1012346664|gb|KYP57856.1| (hypothetical protein KK1_004137, partial [Cajanus cajan])

HSP 1 Score: 195.3 bits (495), Expect = 8.300e-47
Identity = 99/114 (86.84%), Postives = 108/114 (94.74%), Query Frame = 1


		  
Query: 47  KMEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRN 106
           KMEGDTFSGLGNGTQIDSK+LQTFQKSFVQVQ+ILDQNR+LINEINQNHES++PDNLSRN
Sbjct: 1   KMEGDTFSGLGNGTQIDSKILQTFQKSFVQVQNILDQNRVLINEINQNHESKVPDNLSRN 60

Query: 107 VGLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATHKRNRP 161
           VGLIRELNNNIRRVVDLY+DLS S T+SME SSEGDSSG +KSD KA HKR+RP
Sbjct: 61  VGLIRELNNNIRRVVDLYADLSSSFTKSMEVSSEGDSSGAVKSDGKAGHKRHRP 114

[Close]

BLAST of Spo25307.1 vs. NCBI nr
Match: gi|661893296|emb|CDP03105.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 195.3 bits (495), Expect = 8.300e-47
Identity = 101/114 (88.60%), Postives = 106/114 (92.98%), Query Frame = 1


		  
Query: 48  MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV 107
           MEGD FSGLGNGTQID KVLQTFQKSFVQVQ+ILDQNRLLINEINQNHES+IPDNLSRNV
Sbjct: 1   MEGDAFSGLGNGTQIDGKVLQTFQKSFVQVQNILDQNRLLINEINQNHESKIPDNLSRNV 60

Query: 108 GLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATHKRNRPG 162
           GLIRELNNNIRRVVDLY+DLS S T+SM+ASSEGDSSG  KSD KA HKRNRPG
Sbjct: 61  GLIRELNNNIRRVVDLYADLSTSFTKSMDASSEGDSSGAFKSDGKAGHKRNRPG 114

[Close]

BLAST of Spo25307.1 vs. UniProtKB/TrEMBL
Match: A0A0K9REU7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_080550 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.400e-53
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


		  
Query: 48  MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV 107
           MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV
Sbjct: 1   MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV 60

Query: 108 GLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATHKRNRPG 162
           GLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATHKRNRPG
Sbjct: 61  GLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATHKRNRPG 114

[Close]

BLAST of Spo25307.1 vs. UniProtKB/TrEMBL
Match: C6ZKH2_BETVU (ELF4-like protein OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.700e-52
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 1


		  
Query: 48  MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV 107
           MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV
Sbjct: 1   MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV 60

Query: 108 GLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATHKRNRPG 162
           GLIRELNNNIRRVVDLY DLSH+LTRSMEASSEGDSSG LKSDAKATHKRNRPG
Sbjct: 61  GLIRELNNNIRRVVDLYGDLSHTLTRSMEASSEGDSSGALKSDAKATHKRNRPG 114

[Close]

BLAST of Spo25307.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B528_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_013600 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.700e-52
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 1


		  
Query: 48  MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV 107
           MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV
Sbjct: 1   MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV 60

Query: 108 GLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATHKRNRPG 162
           GLIRELNNNIRRVVDLY DLSH+LTRSMEASSEGDSSG LKSDAKATHKRNRPG
Sbjct: 61  GLIRELNNNIRRVVDLYGDLSHTLTRSMEASSEGDSSGALKSDAKATHKRNRPG 114

[Close]

BLAST of Spo25307.1 vs. UniProtKB/TrEMBL
Match: A0A067KQ00_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07470 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.200e-47
Identity = 102/113 (90.27%), Postives = 108/113 (95.58%), Query Frame = 1


		  
Query: 48  MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV 107
           MEGDTFSGLGNGTQIDSK+LQTFQK+FVQVQ ILDQNRLLINEINQNHES+IPDNLSRNV
Sbjct: 1   MEGDTFSGLGNGTQIDSKILQTFQKNFVQVQHILDQNRLLINEINQNHESKIPDNLSRNV 60

Query: 108 GLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATHKRNRP 161
           GLIRELNNNIRRVVDLY+DLS S T+S+EASSEGDSSGVLKSD KA HKRNRP
Sbjct: 61  GLIRELNNNIRRVVDLYADLSSSFTKSIEASSEGDSSGVLKSDGKAGHKRNRP 113

[Close]

BLAST of Spo25307.1 vs. UniProtKB/TrEMBL
Match: A0A068U3H1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041590001 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 5.800e-47
Identity = 101/114 (88.60%), Postives = 106/114 (92.98%), Query Frame = 1


		  
Query: 48  MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV 107
           MEGD FSGLGNGTQID KVLQTFQKSFVQVQ+ILDQNRLLINEINQNHES+IPDNLSRNV
Sbjct: 1   MEGDAFSGLGNGTQIDGKVLQTFQKSFVQVQNILDQNRLLINEINQNHESKIPDNLSRNV 60

Query: 108 GLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATHKRNRPG 162
           GLIRELNNNIRRVVDLY+DLS S T+SM+ASSEGDSSG  KSD KA HKRNRPG
Sbjct: 61  GLIRELNNNIRRVVDLYADLSTSFTKSMDASSEGDSSGAFKSDGKAGHKRNRPG 114

[Close]

BLAST of Spo25307.1 vs. ExPASy Swiss-Prot
Match: EF4L4_ARATH (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.400e-38
Identity = 83/114 (72.81%), Postives = 92/114 (80.70%), Query Frame = 1


		  
Query: 48  MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV 107
           MEGD  SG G+   +D K+LQ+FQKSFV VQ ILDQNRLLINEINQNHES+ PDNL RNV
Sbjct: 1   MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query: 108 GLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATHKRNRPG 162
           GLI+ELNNNIRRV  LY DLSHS  RS++ASSEG+SSG LKSD KA  KR R G
Sbjct: 61  GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114

[Close]

BLAST of Spo25307.1 vs. ExPASy Swiss-Prot
Match: EF4L2_ARATH (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana GN=EFL2 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.000e-36
Identity = 82/116 (70.69%), Postives = 93/116 (80.17%), Query Frame = 1


		  
Query: 47  KMEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRN 106
           +MEGD +SG G   Q+D K+LQ FQKSFVQVQ ILDQNRLLINEINQNHES+  D+L RN
Sbjct: 4   RMEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRN 63

Query: 107 VGLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATH-KRNRPG 162
           VGLIRELNNNIR V  LY DLSHS  RS++ASSEG+S+G LKSD KA + KR R G
Sbjct: 64  VGLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119

[Close]

BLAST of Spo25307.1 vs. ExPASy Swiss-Prot
Match: EF4L3_ARATH (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana GN=EFL3 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 8.100e-34
Identity = 75/98 (76.53%), Postives = 87/98 (88.78%), Query Frame = 1


		  
Query: 48  MEGDTFSGL-GNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRN 107
           MEGDT S + G+G Q+D K+LQTF+KSFVQVQ+ILD NRLLINEINQNHES+IPDNL RN
Sbjct: 1   MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query: 108 VGLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSS 145
           VGLIRELNNN+RRV  LY DLS++ ++SMEASSEGDSS
Sbjct: 61  VGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSS 98

[Close]

BLAST of Spo25307.1 vs. ExPASy Swiss-Prot
Match: ELF4_ARATH (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.400e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 1


		  
Query: 63  DSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNVGLIRELNNNIRRVVD 122
           D  + +   ++F QVQS+LD+NR LI ++N NH+SR+ DN+S+NV LI+ELN NI +VV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 123 LYSDLSHSLTRSMEASSEGDSSG 146
           +YSDL+ S +        G   G
Sbjct: 82  MYSDLNTSFSSGFHGGKNGHDGG 104

[Close]

BLAST of Spo25307.1 vs. ExPASy Swiss-Prot
Match: EF4L1_ARATH (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana GN=EFL1 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.600e-13
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 1


		  
Query: 63  DSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNVGLIRELNNNIRRVVD 122
           D +V  T    F + Q  LDQNR LI  +N+NH SRIPDN+SRNVGLI E+N NI +V++
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 123 LYSDLSHSLTRSME----ASSEGDSS 145
           +YSDLS +  +  +     + +GD++
Sbjct: 94  IYSDLSLNFAKKFDQRRRTTKDGDTT 119

[Close]

BLAST of Spo25307.1 vs. TAIR (Arabidopsis)
Match: AT1G17455.1 (ELF4-like 4)

HSP 1 Score: 158.7 bits (400), Expect = 3.000e-39
Identity = 83/114 (72.81%), Postives = 92/114 (80.70%), Query Frame = 1


		  
Query: 48  MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV 107
           MEGD  SG G+   +D K+LQ+FQKSFV VQ ILDQNRLLINEINQNHES+ PDNL RNV
Sbjct: 1   MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query: 108 GLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATHKRNRPG 162
           GLI+ELNNNIRRV  LY DLSHS  RS++ASSEG+SSG LKSD KA  KR R G
Sbjct: 61  GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114

[Close]

BLAST of Spo25307.1 vs. TAIR (Arabidopsis)
Match: AT1G72630.1 (ELF4-like 2)

HSP 1 Score: 152.1 bits (383), Expect = 2.800e-37
Identity = 82/116 (70.69%), Postives = 93/116 (80.17%), Query Frame = 1


		  
Query: 47  KMEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRN 106
           +MEGD +SG G   Q+D K+LQ FQKSFVQVQ ILDQNRLLINEINQNHES+  D+L RN
Sbjct: 4   RMEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRN 63

Query: 107 VGLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSSGVLKSDAKATH-KRNRPG 162
           VGLIRELNNNIR V  LY DLSHS  RS++ASSEG+S+G LKSD KA + KR R G
Sbjct: 64  VGLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119

[Close]

BLAST of Spo25307.1 vs. TAIR (Arabidopsis)
Match: AT2G06255.1 (ELF4-like 3)

HSP 1 Score: 144.8 bits (364), Expect = 4.500e-35
Identity = 75/98 (76.53%), Postives = 87/98 (88.78%), Query Frame = 1


		  
Query: 48  MEGDTFSGL-GNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRN 107
           MEGDT S + G+G Q+D K+LQTF+KSFVQVQ+ILD NRLLINEINQNHES+IPDNL RN
Sbjct: 1   MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query: 108 VGLIRELNNNIRRVVDLYSDLSHSLTRSMEASSEGDSS 145
           VGLIRELNNN+RRV  LY DLS++ ++SMEASSEGDSS
Sbjct: 61  VGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSS 98

[Close]

BLAST of Spo25307.1 vs. TAIR (Arabidopsis)
Match: AT2G40080.1 (Protein of unknown function (DUF1313))

HSP 1 Score: 79.0 bits (193), Expect = 3.100e-15
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 1


		  
Query: 63  DSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNVGLIRELNNNIRRVVD 122
           D  + +   ++F QVQS+LD+NR LI ++N NH+SR+ DN+S+NV LI+ELN NI +VV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 123 LYSDLSHSLTRSMEASSEGDSSG 146
           +YSDL+ S +        G   G
Sbjct: 82  MYSDLNTSFSSGFHGGKNGHDGG 104

[Close]

BLAST of Spo25307.1 vs. TAIR (Arabidopsis)
Match: AT2G29950.1 (ELF4-like 1)

HSP 1 Score: 75.9 bits (185), Expect = 2.600e-14
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 1


		  
Query: 63  DSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNVGLIRELNNNIRRVVD 122
           D +V  T    F + Q  LDQNR LI  +N+NH SRIPDN+SRNVGLI E+N NI +V++
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 123 LYSDLSHSLTRSME----ASSEGDSS 145
           +YSDLS +  +  +     + +GD++
Sbjct: 94  IYSDLSLNFAKKFDQRRRTTKDGDTT 119

The following BLAST results are available for this feature:

BLAST of Spo25307.1 vs. NCBI nr
BLAST of Spo25307.1 vs. UniProtKB/TrEMBL
BLAST of Spo25307.1 vs. ExPASy Swiss-Prot
BLAST of Spo25307.1 vs. TAIR (Arabidopsis)

BLAST of Spo25307.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902213959\|gb\|KNA17377.1\|	2.0e-53	100.	hypothetical protein SOVF_0805...	[more]
gi\|731377917\|ref\|XP_010668016.1\|	3.8e-52	97.3	PREDICTED: protein ELF4-LIKE 4...	[more]
gi\|802628260\|ref\|XP_012077023.1\|	1.7e-47	90.2	PREDICTED: protein ELF4-LIKE 4...	[more]
gi\|1012346664\|gb\|KYP57856.1\|	8.3e-47	86.8	hypothetical protein KK1_00413...	[more]
gi\|661893296\|emb\|CDP03105.1\|	8.3e-47	88.6	unnamed protein product [Coffe...	[more]

BLAST of Spo25307.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9REU7_SPIOL	1.4e-53	100.	Uncharacterized protein OS=Spi...	[more]
C6ZKH2_BETVU	2.7e-52	97.3	ELF4-like protein OS=Beta vulg...	[more]
A0A0J8B528_BETVU	2.7e-52	97.3	Uncharacterized protein OS=Bet...	[more]
A0A067KQ00_JATCU	1.2e-47	90.2	Uncharacterized protein OS=Jat...	[more]
A0A068U3H1_COFCA	5.8e-47	88.6	Uncharacterized protein OS=Cof...	[more]

BLAST of Spo25307.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
EF4L4_ARATH	5.4e-38	72.8	Protein ELF4-LIKE 4 OS=Arabido...	[more]
EF4L2_ARATH	5.0e-36	70.6	Protein ELF4-LIKE 2 OS=Arabido...	[more]
EF4L3_ARATH	8.1e-34	76.5	Protein ELF4-LIKE 3 OS=Arabido...	[more]
ELF4_ARATH	5.4e-14	45.7	Protein EARLY FLOWERING 4 OS=A...	[more]
EF4L1_ARATH	4.6e-13	46.5	Protein ELF4-LIKE 1 OS=Arabido...	[more]

BLAST of Spo25307.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT1G17455.1	3.0e-39	72.8	ELF4-like 4	[more]
AT1G72630.1	2.8e-37	70.6	ELF4-like 2	[more]
AT2G06255.1	4.5e-35	76.5	ELF4-like 3	[more]
AT2G40080.1	3.1e-15	45.7	Protein of unknown function (D...	[more]
AT2G29950.1	2.6e-14	46.5	ELF4-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009741	Protein of unknown function DUF1313	PFAM	PF07011	DUF1313	coord: 61..142 score: 4.3
None	No IPR available	PANTHER	PTHR33469	FAMILY NOT NAMED	coord: 48..161 score: 2.1
None	No IPR available	PANTHER	PTHR33469:SF3	PROTEIN ELF4-LIKE 2-RELATED	coord: 48..161 score: 2.1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046339	diacylglycerol metabolic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0044267	cellular protein metabolic process
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0030488	tRNA methylation
biological_process	GO:0009698	phenylpropanoid metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009056	catabolic process
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006011	UDP-glucose metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0051179	localization
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0035556	intracellular signal transduction
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0010035	response to inorganic substance
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0034655	nucleobase-containing compound catabolic process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006260	DNA replication
biological_process	GO:0006281	DNA repair
biological_process	GO:0044265	cellular macromolecule catabolic process
biological_process	GO:0006457	protein folding
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0018108	peptidyl-tyrosine phosphorylation
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006810	transport
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0009627	systemic acquired resistance
biological_process	GO:0009863	salicylic acid mediated signaling pathway
biological_process	GO:0009697	salicylic acid biosynthetic process
biological_process	GO:0045017	glycerolipid biosynthetic process
biological_process	GO:0009987	cellular process
biological_process	GO:0006970	response to osmotic stress
biological_process	GO:0009651	response to salt stress
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0007165	signal transduction
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009269	response to desiccation
biological_process	GO:0009790	embryo development
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006508	proteolysis
biological_process	GO:0005992	trehalose biosynthetic process
biological_process	GO:0070536	protein K63-linked deubiquitination
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0071108	protein K48-linked deubiquitination
biological_process	GO:0070676	intralumenal vesicle formation
biological_process	GO:0061025	membrane fusion
biological_process	GO:0015031	protein transport
biological_process	GO:0010224	response to UV-B
biological_process	GO:0010046	response to mycotoxin
biological_process	GO:2000030	regulation of response to red or far red light
biological_process	GO:0008152	metabolic process
biological_process	GO:0009864	induced systemic resistance, jasmonic acid mediated signaling pathway
biological_process	GO:0009395	phospholipid catabolic process
biological_process	GO:0009409	response to cold
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0007034	vacuolar transport
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0010200	response to chitin
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0044446	intracellular organelle part
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0031515	tRNA (m1A) methyltransferase complex
cellular_component	GO:0008287	protein serine/threonine phosphatase complex
cellular_component	GO:0005771	multivesicular body
cellular_component	GO:0000159	protein phosphatase type 2A complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000785	chromatin
cellular_component	GO:0000815	ESCRT III complex
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0031981	nuclear lumen
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005215	transporter activity
molecular_function	GO:0004527	exonuclease activity
molecular_function	GO:0003756	protein disulfide isomerase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0033743	peptide-methionine (R)-S-oxide reductase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0004871	obsolete signal transducer activity
molecular_function	GO:0004435	phosphatidylinositol phospholipase C activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008237	metallopeptidase activity
molecular_function	GO:0005488	binding
molecular_function	GO:0019888	protein phosphatase regulator activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0019899	enzyme binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0004144	diacylglycerol O-acyltransferase activity
molecular_function	GO:0016760	cellulose synthase (UDP-forming) activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0016429	tRNA (adenine-N1-)-methyltransferase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0004715	non-membrane spanning protein tyrosine kinase activity
molecular_function	GO:0030247	polysaccharide binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0004722	protein serine/threonine phosphatase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0046983	protein dimerization activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo17713	0.81	Barchart \| Table
Spo27031	0.75	Barchart \| Table
Spo09316	0.74	Barchart \| Table
Spo05816	0.74	Barchart \| Table
Spo24101	0.74	Barchart \| Table
Spo07515	0.74	Barchart \| Table
Spo11193	0.73	Barchart \| Table
Spo00748	0.73	Barchart \| Table
Spo17338	0.72	Barchart \| Table
Spo03610	0.72	Barchart \| Table
Spo02454	0.72	Barchart \| Table
Spo13499	0.72	Barchart \| Table
Spo09761	0.71	Barchart \| Table
Spo26013	0.71	Barchart \| Table
Spo10653	0.71	Barchart \| Table
Spo12718	0.71	Barchart \| Table
Spo04129	0.71	Barchart \| Table
Spo19035	0.71	Barchart \| Table
Spo04663	0.71	Barchart \| Table
Spo04941	0.71	Barchart \| Table
Spo07786	0.71	Barchart \| Table
Spo08725	0.71	Barchart \| Table
Spo23382	0.70	Barchart \| Table
Spo25320	0.70	Barchart \| Table
Spo21525	0.70	Barchart \| Table
Spo27352	0.70	Barchart \| Table
Spo18389	0.70	Barchart \| Table
Spo01514	0.70	Barchart \| Table
Spo16361	0.69	Barchart \| Table
Spo08187	0.69	Barchart \| Table
Spo00716	0.69	Barchart \| Table
Spo05961	0.69	Barchart \| Table
Spo17344	0.69	Barchart \| Table
Spo22436	0.69	Barchart \| Table
Spo01792	0.69	Barchart \| Table
Spo19851	0.68	Barchart \| Table
Spo00526	0.68	Barchart \| Table
Spo02231	0.68	Barchart \| Table
Spo02548	0.68	Barchart \| Table
Spo03184	0.68	Barchart \| Table
Spo06792	0.68	Barchart \| Table
Spo08494	0.68	Barchart \| Table
Spo10171	0.68	Barchart \| Table
Spo12363	0.68	Barchart \| Table
Spo13171	0.68	Barchart \| Table
Spo13583	0.68	Barchart \| Table
Spo19123	0.68	Barchart \| Table
Spo20174	0.68	Barchart \| Table
Spo21362	0.68	Barchart \| Table
Spo23402	0.68	Barchart \| Table
Spo01198	0.67	Barchart \| Table
Spo12934	0.67	Barchart \| Table
Spo05269	0.67	Barchart \| Table
Spo09918	0.67	Barchart \| Table
Spo12218	0.67	Barchart \| Table
Spo02947	0.67	Barchart \| Table
Spo00190	0.67	Barchart \| Table
Spo24096	0.67	Barchart \| Table
Spo16584	0.67	Barchart \| Table
Spo19503	0.67	Barchart \| Table
Spo15390	0.67	Barchart \| Table
Spo10895	0.67	Barchart \| Table
Spo03903	0.66	Barchart \| Table
Spo16587	0.66	Barchart \| Table
Spo07468	0.66	Barchart \| Table
Spo04639	0.66	Barchart \| Table
Spo01629	0.66	Barchart \| Table
Spo00172	0.66	Barchart \| Table
Spo10861	0.66	Barchart \| Table
Spo03630	0.66	Barchart \| Table
Spo02732	0.66	Barchart \| Table
Spo24331	0.66	Barchart \| Table
Spo02481	0.66	Barchart \| Table
Spo25350	0.66	Barchart \| Table
Spo27162	0.65	Barchart \| Table
Spo06022	0.65	Barchart \| Table
Spo24269	0.65	Barchart \| Table
Spo19895	0.65	Barchart \| Table
Spo23278	0.65	Barchart \| Table