Spo06060 (gene)

Overview
NameSpo06060
Typegene
OrganismSpinacia oleracea (Spinach)
Description50S ribosomal protein L35
Locationchr2 : 12566380 .. 12570447 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTACAATAATTTTTAGCCGTCATACGTGGACTCGCACGTATGACGTGGGCACCGACGTGACACGTACGCATCATCATATCTTCACATTCCAAACTTCTATCCCCATATCCACAAACTCAAACCTCCATTACTCTACTCTCCCAAGCTCACTCACTCTCTCTCTCTCTGTTTCTTGCTCTCCTCTGAACAACTGGTTTTGGCACAACCATAATGGCAATGGCTTCCGCAACAGCAACACTGTCATTCAAAACCCCATCTCTTTCTCTCTCTCCTCCCTCAACTCGATGCTCTGCAGCTCAAGGCATTTCTCTTACGCATTTCAACAAACAGCTTAAGAGCACTCTCAACCTTAGCTCTTCCAGCAGCATTTCATCTTCTAAGCTTCAACCTATTGTTCTTAAGAATAAGAGAATCTCCACCGTCGATTCTTCTGTCTCTACTTCTTCTCCTTCTTTCACTGTTTTCGCTGCTAAAGGGTACAAGATGAAGACCCACAAGGTCCATTATTTCTCTCTTATCTCCGAATTTTTACTGGGTTTTGGTTAATAGAGTGATTTGGGGTTTGGTTTCTTATTAAAGTCGTTAATTGCGTGTTCTATTTGGTAAATTTTGAATAATTGTAGGTCAATTATGGCTTTCTCTATTTTATTTCTTTGGTTAATTGGGTGATTTGGGTGGTGAGGTTCTTGTATACTGTTTTTTATTTGGTGAATTTTGAATCAGTTTAGGTCAATTCTCCCTCTTTTCTGGTTTTGGGTAATTTGGATTAGTGGCAGTCTTGAATAATTGGTTAAATGTGTGTTATAATTGGTGAATTTGAATAATTGTAGGCCTCAGCAAAGAGATTTAGGGTAACTGGAAAGGGGAAGATTGTGAGGAGGAGAGCTGGGAAGCAGCATCTTCTCGCCAAGAAGAACACTAAGAGGAAGAATCGTCTCTCCAAATTGGTATTCATCTCTCTATTTTCATGCTAATATACATTTTTAGACTTGTGTGTTTGAAACTTAAGCAATCTTTTAGTAATTGGTTCTCTACTGAACACCATAGTTGGTATGCTGTTATTGAACTTGATGTATGGCTTGTTTGAACATAATCTAAGCTCCATCCTTGTGAAACTGCACTACATTACTCGGGTGCGTTGAAAGTCTATTTAGCATAAGAACAGGAAATTCTGATTGTGTCTCTTCGATTCTTTGTGATCCTTTTGGCTGTGTTAACTTAAATGGTACATTAGTACTCCCTCTGTCTGCATGCCTTTGCATGGATGCTGAATTGCTGATGTAGAAGAAATTTATGTCTTCGGTATCTACTATGACTGTCTCTGTGTATAATTGTCTTTTTAGCATTTTTTTTATCCTAACTTTATCATGTTATGTTTCGGTTTTCCATGTGGTCTACATTTGCTTCTCTTTCATTTGTGTCAGTATAATCTGTGTGATTATACATTATGGGTATGTGAAGATTGGCATGATGTTAGCAAACCCTTCAGTGTTGACTTGCACTTTATGACAATAGTGTTAAGGGAATTGGGCTATAAAATCGCCGGCTAATGGTGAAAGTCTCGTGTTGTATGAATTTTGAGCCTTTGTTTTTAGTTTTATATTTGAAGATTGACATGCTGTAGAAGTCTCATCTTGGTGTTTCTTTTTCAAGTTGATATGGTCTTTCTTAATCTCTTTTCTTTGGAAGGGATCTTGGCTTGAAGGCTAAGTGTATGTGCCGAACTAGTTTATGATGTTTAAGCAGTCTGATAGTAGTTGAGGATAAGTTGAAGATAAATGGAAGTTCTCAGGACCTTGGTTTATTCACTTGCTTCATAAGATTTAGGGATGGTGGTAATGACATATTGCACTTTGCACTGCCATCAGGTAGTAATAGTATTGCAAAAGATTTTGTCAATTAAGTATGCATTGTTCTTCTCATGTCTTTATTACCATGAAGGGAGTTTGGAATGAGCTGTAATCAAAACGACAGAAGAAAACAACATATTTTCTTATGTGGATGCATTAGATTGGACCGTTGAGAATAAAAATGTATGCTTAGTGTAAAGGGTTTGATGACTTTGATCGCAAAATTAGACATGCTTCAATACCATTTGAATTATTTATTACCTCAACTAAATAGGTTGAACGAAAGAGTGTGATGATATCAACTTTGTCGGAGAAGCCAAATAAATTTTGGAAAGGACTCCTATATATAAGCGAGCAAGGCATAAGTAAGCATCATACAAACATGAAACATGTGGGATCGGTTATGTATATAGGAGAACATGACAAATAGGATGCATCACTTTAGAAGCTTCTGGTTAGTTTTAAACGGCTCACATAATATGCGGCCCCTTCATTAAGCATCATTATTCACTGCTTTCAAGGTTGTATATCTTGACAAAATGTACCTGTTATATGAAGGACTTTTGGGAATGTCCCATCCTAAAACCCATACGAACCTCATATCAAGTTGGGCTTTTTGAATGACCTGTTTCCTCAAATCATTCTGATTTTTTCATGTAATTCTCATATCAACTCCTACTTAAGTCCCTTGGGGTATTGGATCAATAGTGGCTAATAAGGACATATTCTTTTATTTTCCTTACAATTTATCAAATTTCCAATTCCCTTCTGTTTGGCTGAGGCCATACATTAGGGGAGCCGGGACAAATCATAAGGTGAAAGCAATAAGTGTCTGTAATGCTGTGATGCTGAAGAGAGTCCTTTTCTTTCTTTTCTAAAAATCTTTTCCTTATAGAATAAGAATTCGAAACAAAAGTGAGTCCTCTACTGTAAGATTTGTTACTTAATGGATCAATAAGGTTGAATTCGAGATCAATGATCTTACAAACAGTTTGTTGAATCAGTGTCTTGGCGTACAGAACCAAGGCCTCCGTACACTACTGCAGAATGTTTCTCATTTTGACTAGTCTCTTGGTGACACTTACCTAATTTGCTAGTATAAGATTGGGTACGGGTTCACAATTCCCTACCTAATTTGTTAAATTAGGCAAAAAGTTTACCGCTTTAATTATATACTTCTCCTTACGGTCCGCGTTTTGCGCGAGGATTAGGGAATAACATTGGTCTTCCATCAGTTTCAGGACATGGATAAACTTTCTTTAGATTTTCTCTTTAGAGGCCTTTTGTGAAGTTGACCTGTTTCTAATTTTTTTCATTTTCCCCTTGTTGAGCTGTTGAAACTATAGATATTTTTTTTTTTTTTTTTGTGAATTGAATGTGAGCATGTCCTGGGTGAGATGGTCTCACATAAATTTATTCTGAGACAATCTTATAATACATTTGCTACAGAATGTTGATTTTGCTGTCCCCTTGCTGAGTTTCTGAAAGCCTGAAACTAGTGAATGTTGTTTCAGACCTTTATTCTTTGATTTTGCTTTCACTGTGTGTGATCCTGAATCTAACACTCTCTTATTTTAATGCTTAGATTCAAGTTGATAGGAGTGATTATGACAATGTGATCGGCGCATTGCCCTACCTGAAAGTAAACAGGAAAGTATAATGGAAGCAACATTTCCATCAAAGACTCAGCAAAGTTTCTCTCCCTCTTGTAATTTCGAATCATGTTTAGCAATTATGCTGTTAATTCTAGCTAATCGATCATTTACATCCAAGATTTTGTTAGTTCTTCTCTTTCAGCATGTTCATGTAACCAAATGATTATTTCTGGAGCAAGTTCTTTTGTGGCTTAGTACAATATTGCTTATGCTTGAAAGTTGTAACCAAATGAATCAAAGTCCAACAGATATGTGAAGCAGCTTTTACTGTAAGTCTGTCCGAGAAAGTATACCCCGATTTCAGCAAACTCGCCTTTTTTTTCTCCTGAAATCCTCATCTATTTTATGCTTGTGTCAAAAATTCCCCTAAAAAAAGGTTGTTTTGAGGGGGCTATGAAGGGGAATTTTCGACACATGAAGAGCGATTTCCGAATAAAATGCTATTGAGTATTGAGGTAGTTCAACAACCGACGTCCGTACAGAACAAATAGAACAATAATATCTAGTATCCTGTGTGTACGATAAAATTATTGTACAGAGTACATCCTTTATTAGTGGGAT

mRNA sequence

TATTACAATAATTTTTAGCCGTCATACGTGGACTCGCACGTATGACGTGGGCACCGACGTGACACGTACGCATCATCATATCTTCACATTCCAAACTTCTATCCCCATATCCACAAACTCAAACCTCCATTACTCTACTCTCCCAAGCTCACTCACTCTCTCTCTCTCTGTTTCTTGCTCTCCTCTGAACAACTGGTTTTGGCACAACCATAATGGCAATGGCTTCCGCAACAGCAACACTGTCATTCAAAACCCCATCTCTTTCTCTCTCTCCTCCCTCAACTCGATGCTCTGCAGCTCAAGGCATTTCTCTTACGCATTTCAACAAACAGCTTAAGAGCACTCTCAACCTTAGCTCTTCCAGCAGCATTTCATCTTCTAAGCTTCAACCTATTGTTCTTAAGAATAAGAGAATCTCCACCGTCGATTCTTCTGTCTCTACTTCTTCTCCTTCTTTCACTGTTTTCGCTGCTAAAGGGTACAAGATGAAGACCCACAAGGCCTCAGCAAAGAGATTTAGGGTAACTGGAAAGGGGAAGATTGTGAGGAGGAGAGCTGGGAAGCAGCATCTTCTCGCCAAGAAGAACACTAAGAGGAAGAATCGTCTCTCCAAATTGATTCAAGTTGATAGGAGTGATTATGACAATGTGATCGGCGCATTGCCCTACCTGAAAGTAAACAGGAAAGTATAATGGAAGCAACATTTCCATCAAAGACTCAGCAAAGTTTCTCTCCCTCTTGTAATTTCGAATCATGTTTAGCAATTATGCTGTTAATTCTAGCTAATCGATCATTTACATCCAAGATTTTGTTAGTTCTTCTCTTTCAGCATGTTCATGTAACCAAATGATTATTTCTGGAGCAAGTTCTTTTGTGGCTTAGTACAATATTGCTTATGCTTGAAAGTTGTAACCAAATGAATCAAAGTCCAACAGATATGTGAAGCAGCTTTTACTGTAAGTCTGTCCGAGAAAGTATACCCCGATTTCAGCAAACTCGCCTTTTTTTTCTCCTGAAATCCTCATCTATTTTATGCTTGTGTCAAAAATTCCCCTAAAAAAAGGTTGTTTTGAGGGGGCTATGAAGGGGAATTTTCGACACATGAAGAGCGATTTCCGAATAAAATGCTATTGAGTATTGAGGTAGTTCAACAACCGACGTCCGTACAGAACAAATAGAACAATAATATCTAGTATCCTGTGTGTACGATAAAATTATTGTACAGAGTACATCCTTTATTAGTGGGAT

Coding sequence (CDS)

ATGGCAATGGCTTCCGCAACAGCAACACTGTCATTCAAAACCCCATCTCTTTCTCTCTCTCCTCCCTCAACTCGATGCTCTGCAGCTCAAGGCATTTCTCTTACGCATTTCAACAAACAGCTTAAGAGCACTCTCAACCTTAGCTCTTCCAGCAGCATTTCATCTTCTAAGCTTCAACCTATTGTTCTTAAGAATAAGAGAATCTCCACCGTCGATTCTTCTGTCTCTACTTCTTCTCCTTCTTTCACTGTTTTCGCTGCTAAAGGGTACAAGATGAAGACCCACAAGGCCTCAGCAAAGAGATTTAGGGTAACTGGAAAGGGGAAGATTGTGAGGAGGAGAGCTGGGAAGCAGCATCTTCTCGCCAAGAAGAACACTAAGAGGAAGAATCGTCTCTCCAAATTGATTCAAGTTGATAGGAGTGATTATGACAATGTGATCGGCGCATTGCCCTACCTGAAAGTAAACAGGAAAGTATAA

Protein sequence

MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQPIVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo06060.1Spo06060.1mRNA


Homology
[Close]
BLAST of Spo06060.1 vs. NCBI nr
Match: gi|132918|sp|P23326.1|RK35_SPIOL (RecName: Full=50S ribosomal protein L35, chloroplastic; AltName: Full=CL35; Flags: Precursor)

HSP 1 Score: 285.0 bits (728), Expect = 7.900e-74
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 1 

		  

Query: 1   MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQP 60
           MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSK+QP
Sbjct: 1   MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKVQP 60

Query: 61  IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL 120
           IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL
Sbjct: 61  IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL 120

Query: 121 LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV 160
           LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV
Sbjct: 121 LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV 159
[Close]
BLAST of Spo06060.1 vs. NCBI nr
Match: gi|870851445|gb|KMT03492.1| (hypothetical protein BVRB_8g191720 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 227.6 bits (579), Expect = 1.500e-56
Identity = 134/162 (82.72%), Postives = 142/162 (87.65%), Query Frame = 1 

		  

Query: 1   MAMASATAT-LSFKTPSL---SLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSS 60
           MAMASAT T LS K+ S    SLSPP TRC+ A+GISLTHFNK L +TL L+SS SISSS
Sbjct: 1   MAMASATTTILSLKSSSFQTSSLSPPITRCTTAKGISLTHFNKHLNNTLKLTSSHSISSS 60

Query: 61  KLQPIVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAG 120
            LQPI L+N RISTVDS  STSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAG
Sbjct: 61  VLQPISLQN-RISTVDSPTSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAG 120

Query: 121 KQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 159
           KQHLLAKKNTKRK RLSK++QVDRSDYDNVIGALPYLKVNRK
Sbjct: 121 KQHLLAKKNTKRKTRLSKMVQVDRSDYDNVIGALPYLKVNRK 161
[Close]
BLAST of Spo06060.1 vs. NCBI nr
Match: gi|731352939|ref|XP_010687804.1| (PREDICTED: nuclear pore complex protein NUP43 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 227.6 bits (579), Expect = 1.500e-56
Identity = 134/162 (82.72%), Postives = 142/162 (87.65%), Query Frame = 1 

		  

Query: 1   MAMASATAT-LSFKTPSL---SLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSS 60
           MAMASAT T LS K+ S    SLSPP TRC+ A+GISLTHFNK L +TL L+SS SISSS
Sbjct: 381 MAMASATTTILSLKSSSFQTSSLSPPITRCTTAKGISLTHFNKHLNNTLKLTSSHSISSS 440

Query: 61  KLQPIVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAG 120
            LQPI L+N RISTVDS  STSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAG
Sbjct: 441 VLQPISLQN-RISTVDSPTSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAG 500

Query: 121 KQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 159
           KQHLLAKKNTKRK RLSK++QVDRSDYDNVIGALPYLKVNRK
Sbjct: 501 KQHLLAKKNTKRKTRLSKMVQVDRSDYDNVIGALPYLKVNRK 541
[Close]
BLAST of Spo06060.1 vs. NCBI nr
Match: gi|357479955|ref|XP_003610263.1| (50S ribosomal protein L35 [Medicago truncatula])

HSP 1 Score: 147.5 bits (371), Expect = 2.000e-32
Identity = 99/158 (62.66%), Postives = 115/158 (72.78%), Query Frame = 1 

		  

Query: 1   MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQP 60
           MA+ASATAT+S    +L LSPPST    +     + F+  + S L L+ S SIS+    P
Sbjct: 1   MALASATATVS-SFAALRLSPPSTSTRVSFSSVKSPFSNNVNS-LKLNWSCSISA----P 60

Query: 61  IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL 120
           I+ +N  I      V+TS  S T+ +AKGYKMKTHKASAKRFRVTG GKIVRRRAGKQHL
Sbjct: 61  ILNQNHSI------VTTSPRSLTIVSAKGYKMKTHKASAKRFRVTGAGKIVRRRAGKQHL 120

Query: 121 LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 159
           L KKN KRK RLSK+IQV+RSDYDNVIGALPYLKVNRK
Sbjct: 121 LYKKNKKRKLRLSKMIQVNRSDYDNVIGALPYLKVNRK 146
[Close]
BLAST of Spo06060.1 vs. NCBI nr
Match: gi|747065451|ref|XP_011079364.1| (PREDICTED: 50S ribosomal protein L35, chloroplastic [Sesamum indicum])

HSP 1 Score: 145.6 bits (366), Expect = 7.500e-32
Identity = 92/154 (59.74%), Postives = 109/154 (70.78%), Query Frame = 1 

		  

Query: 4   ASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQPIVL 63
           A+  AT  F     + SP   + +AA   + T F K+  S+LNLSSS SIS   L+P+VL
Sbjct: 3   AATMATTGFSFGLKTFSPRREKRTAAVAFTFTPFIKKQASSLNLSSSHSISG--LRPLVL 62

Query: 64  KNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAK 123
              +  T    V  +S   TV  AKGYKMKTHKASAKRFRV+G GKI+RRRAGKQHLL K
Sbjct: 63  S--KTLTATGPVQRNSLPLTVVCAKGYKMKTHKASAKRFRVSGSGKIMRRRAGKQHLLRK 122

Query: 124 KNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNR 158
           KNTKR+ RLSK++QVDRSDY+NVIGALPYLKVNR
Sbjct: 123 KNTKRRLRLSKMVQVDRSDYNNVIGALPYLKVNR 152
[Close]
BLAST of Spo06060.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCY8_SPIOL (50S ribosomal protein L35 OS=Spinacia oleracea GN=SOVF_080710 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 5.500e-74
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 1 

		  

Query: 1   MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQP 60
           MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSK+QP
Sbjct: 1   MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKVQP 60

Query: 61  IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL 120
           IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL
Sbjct: 61  IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL 120

Query: 121 LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV 160
           LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV
Sbjct: 121 LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV 159
[Close]
BLAST of Spo06060.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BQL1_BETVU (50S ribosomal protein L35 OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g191720 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.000e-56
Identity = 134/162 (82.72%), Postives = 142/162 (87.65%), Query Frame = 1 

		  

Query: 1   MAMASATAT-LSFKTPSL---SLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSS 60
           MAMASAT T LS K+ S    SLSPP TRC+ A+GISLTHFNK L +TL L+SS SISSS
Sbjct: 1   MAMASATTTILSLKSSSFQTSSLSPPITRCTTAKGISLTHFNKHLNNTLKLTSSHSISSS 60

Query: 61  KLQPIVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAG 120
            LQPI L+N RISTVDS  STSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAG
Sbjct: 61  VLQPISLQN-RISTVDSPTSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAG 120

Query: 121 KQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 159
           KQHLLAKKNTKRK RLSK++QVDRSDYDNVIGALPYLKVNRK
Sbjct: 121 KQHLLAKKNTKRKTRLSKMVQVDRSDYDNVIGALPYLKVNRK 161
[Close]
BLAST of Spo06060.1 vs. UniProtKB/TrEMBL
Match: B7FGY3_MEDTR (50S ribosomal protein L35 OS=Medicago truncatula GN=MTR_4g130300 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.400e-32
Identity = 99/158 (62.66%), Postives = 115/158 (72.78%), Query Frame = 1 

		  

Query: 1   MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQP 60
           MA+ASATAT+S    +L LSPPST    +     + F+  + S L L+ S SIS+    P
Sbjct: 1   MALASATATVS-SFAALRLSPPSTSTRVSFSSVKSPFSNNVNS-LKLNWSCSISA----P 60

Query: 61  IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL 120
           I+ +N  I      V+TS  S T+ +AKGYKMKTHKASAKRFRVTG GKIVRRRAGKQHL
Sbjct: 61  ILNQNHSI------VTTSPRSLTIVSAKGYKMKTHKASAKRFRVTGAGKIVRRRAGKQHL 120

Query: 121 LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 159
           L KKN KRK RLSK+IQV+RSDYDNVIGALPYLKVNRK
Sbjct: 121 LYKKNKKRKLRLSKMIQVNRSDYDNVIGALPYLKVNRK 146
[Close]
BLAST of Spo06060.1 vs. UniProtKB/TrEMBL
Match: A0A068U3V4_COFCA (50S ribosomal protein L35 OS=Coffea canephora GN=GSCOC_T00041250001 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.400e-31
Identity = 95/155 (61.29%), Postives = 113/155 (72.90%), Query Frame = 1 

		  

Query: 5   SATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQPIVLK 64
           S T T+ F   SL +  P       + + L+ F K  K++LNLSS+ SIS     P+VL 
Sbjct: 7   SRTTTMVF---SLGIKGPQQH-HPVRTVHLSPFAK--KTSLNLSSTCSISG--FTPVVLN 66

Query: 65  NKRISTVDSSVSTSSPSF-TVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAK 124
             R+STV S    S+P F T+  AKGYKMKTHKASAKRFRV+G GKI+RRRAGKQHLLAK
Sbjct: 67  --RLSTVASPSQISNPQFLTIVCAKGYKMKTHKASAKRFRVSGSGKIMRRRAGKQHLLAK 126

Query: 125 KNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 159
           KNTKRK RLSK++QVD+SDY+NVIGALPYLKVNRK
Sbjct: 127 KNTKRKLRLSKMVQVDQSDYNNVIGALPYLKVNRK 151
[Close]
BLAST of Spo06060.1 vs. UniProtKB/TrEMBL
Match: V4U1U3_9ROSI (50S ribosomal protein L35 OS=Citrus clementina GN=CICLE_v10009792mg PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.400e-31
Identity = 90/151 (59.60%), Postives = 113/151 (74.83%), Query Frame = 1 

		  

Query: 10  LSFKTPSLSLSPPSTRCSAAQGISLT-HFNKQLKSTLNLSSSSSISSSKLQPIVLKNKRI 69
           +SF      L P S+   A++G SL    + +L ++L L+SS SIS+S   P++ ++  +
Sbjct: 5   ISFNLKFCPLCPSSSSVRASRGSSLRLALSNKLNNSLRLNSSYSISAS---PLLFRHNNL 64

Query: 70  STVDSSVSTSSP-SFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTK 129
            T   +V+ + P + TVFAAKGYKMKTHKASAKRFRVTGKGKI+RRRAGKQHLLAKKNTK
Sbjct: 65  PT---TVTQNRPQTVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTK 124

Query: 130 RKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 159
           RK RLSK+ +V RSDYDNVIG LPYLKVNR+
Sbjct: 125 RKLRLSKMHEVSRSDYDNVIGCLPYLKVNRQ 149
[Close]
BLAST of Spo06060.1 vs. ExPASy Swiss-Prot
Match: RK35_SPIOL (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea GN=RPL35 PE=1 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 4.900e-76
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 1 

		  

Query: 1   MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQP 60
           MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSK+QP
Sbjct: 1   MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKVQP 60

Query: 61  IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL 120
           IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL
Sbjct: 61  IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL 120

Query: 121 LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV 160
           LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV
Sbjct: 121 LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV 159
[Close]
BLAST of Spo06060.1 vs. ExPASy Swiss-Prot
Match: RK35_ARATH (50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana GN=RPL35 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.700e-31
Identity = 95/157 (60.51%), Postives = 109/157 (69.43%), Query Frame = 1 

		  

Query: 2   AMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQPI 61
           +++ A+  +SF  P  S SP  +  S+       HF        +LSSS SIS  +    
Sbjct: 3   SLSMASVNVSFCHPLRSSSPKVSLRSSV------HF------ATSLSSSHSISGLRA--- 62

Query: 62  VLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLL 121
           VL  K ISTV S  S    SFTVFA KGYKMKTHKASAKRFRVTG+GKIVRRR+GKQHLL
Sbjct: 63  VLPLK-ISTVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLL 122

Query: 122 AKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 159
           AKKN KRK RLSK+ +V+RSDYDNVIGALPYLKVNRK
Sbjct: 123 AKKNNKRKLRLSKMTEVNRSDYDNVIGALPYLKVNRK 143
[Close]
BLAST of Spo06060.1 vs. ExPASy Swiss-Prot
Match: RL35_ANAVT (50S ribosomal protein L35 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpmI PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.100e-10
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 1 

		  

Query: 91  KMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGAL 150
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SK+  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 151 PYL 154
           PYL
Sbjct: 63  PYL 65
[Close]
BLAST of Spo06060.1 vs. ExPASy Swiss-Prot
Match: RL35_NOSS1 (50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpmI PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.100e-10
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 1 

		  

Query: 91  KMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGAL 150
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SK+  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 151 PYL 154
           PYL
Sbjct: 63  PYL 65
[Close]
BLAST of Spo06060.1 vs. ExPASy Swiss-Prot
Match: RL35_CYAP4 (50S ribosomal protein L35 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpmI PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.000e-9
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1 

		  

Query: 91  KMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGAL 150
           K+KT KA+AKRFR TG GK  RR+A + HLL  K+T RKN+LS +  VD  D + V   L
Sbjct: 3   KLKTRKAAAKRFRQTGTGKFTRRKANRNHLLEHKSTARKNKLSHMAIVDERDEERVSLML 62

Query: 151 PYL 154
           PYL
Sbjct: 63  PYL 65
[Close]
BLAST of Spo06060.1 vs. TAIR (Arabidopsis)
Match: AT2G24090.1 (Ribosomal protein L35)

HSP 1 Score: 136.0 bits (341), Expect = 2.100e-32
Identity = 95/157 (60.51%), Postives = 109/157 (69.43%), Query Frame = 1 

		  

Query: 2   AMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQPI 61
           +++ A+  +SF  P  S SP  +  S+       HF        +LSSS SIS  +    
Sbjct: 3   SLSMASVNVSFCHPLRSSSPKVSLRSSV------HF------ATSLSSSHSISGLRA--- 62

Query: 62  VLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLL 121
           VL  K ISTV S  S    SFTVFA KGYKMKTHKASAKRFRVTG+GKIVRRR+GKQHLL
Sbjct: 63  VLPLK-ISTVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLL 122

Query: 122 AKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 159
           AKKN KRK RLSK+ +V+RSDYDNVIGALPYLKVNRK
Sbjct: 123 AKKNNKRKLRLSKMTEVNRSDYDNVIGALPYLKVNRK 143
The following BLAST results are available for this feature:
BLAST of Spo06060.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|132918|sp|P23326.1|RK35_SPIOL7.9e-7499.3RecName: Full=50S ribosomal pr... [more]
gi|870851445|gb|KMT03492.1|1.5e-5682.7hypothetical protein BVRB_8g19... [more]
gi|731352939|ref|XP_010687804.1|1.5e-5682.7PREDICTED: nuclear pore comple... [more]
gi|357479955|ref|XP_003610263.1|2.0e-3262.650S ribosomal protein L35 [Med... [more]
gi|747065451|ref|XP_011079364.1|7.5e-3259.7PREDICTED: 50S ribosomal prote... [more]
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BLAST of Spo06060.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RCY8_SPIOL5.5e-7499.350S ribosomal protein L35 OS=S... [more]
A0A0J8BQL1_BETVU1.0e-5682.750S ribosomal protein L35 OS=B... [more]
B7FGY3_MEDTR1.4e-3262.650S ribosomal protein L35 OS=M... [more]
A0A068U3V4_COFCA3.4e-3161.250S ribosomal protein L35 OS=C... [more]
V4U1U3_9ROSI4.4e-3159.650S ribosomal protein L35 OS=C... [more]
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BLAST of Spo06060.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RK35_SPIOL4.9e-7699.350S ribosomal protein L35, chl... [more]
RK35_ARATH3.7e-3160.550S ribosomal protein L35, chl... [more]
RL35_ANAVT6.1e-1057.150S ribosomal protein L35 OS=A... [more]
RL35_NOSS16.1e-1057.150S ribosomal protein L35 OS=N... [more]
RL35_CYAP41.0e-955.550S ribosomal protein L35 OS=C... [more]
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BLAST of Spo06060.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G24090.12.1e-3260.5Ribosomal protein L35[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001706Ribosomal protein L35, non-mitochondrialPRINTSPR00064RIBOSOMALL35coord: 124..142
score: 2.4E-20coord: 109..123
score: 2.4E-20coord: 91..108
score: 2.4
IPR001706Ribosomal protein L35, non-mitochondrialHAMAPMF_00514Ribosomal_L35coord: 89..152
score: 15
IPR001706Ribosomal protein L35, non-mitochondrialTIGRFAMsTIGR00001TIGR00001coord: 90..152
score: 8.1
IPR018265Ribosomal protein L35, conserved sitePROSITEPS00936RIBOSOMAL_L35coord: 93..119
scor
IPR021137Ribosomal protein L35PFAMPF01632Ribosomal_L35pcoord: 90..146
score: 7.5
NoneNo IPR availablePANTHERPTHR33343FAMILY NOT NAMEDcoord: 81..159
score: 2.2
NoneNo IPR availablePANTHERPTHR33343:SF150S RIBOSOMAL PROTEIN L35coord: 81..159
score: 2.2
NoneNo IPR availableunknownSSF143034L35p-likecoord: 90..152
score: 2.75

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0006223 uracil salvage
biological_process GO:0006399 tRNA metabolic process
biological_process GO:0006364 rRNA processing
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0042793 plastid transcription
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0034051 negative regulation of plant-type hypersensitive response
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0009658 chloroplast organization
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0015979 photosynthesis
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0030154 cell differentiation
biological_process GO:0044206 UMP salvage
biological_process GO:0006412 translation
biological_process GO:0032502 developmental process
biological_process GO:0016556 mRNA modification
biological_process GO:0010207 photosystem II assembly
cellular_component GO:0009523 photosystem II
cellular_component GO:0009579 thylakoid
cellular_component GO:0009295 nucleoid
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009536 plastid
cellular_component GO:0005622 intracellular
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005829 cytosol
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0004845 uracil phosphoribosyltransferase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0005515 protein binding
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0047134 protein-disulfide reductase activity
RNA-Seq Expression