Spo17925 (gene) | SpinachBase

Overview


Name	Spo17925
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	DNA-directed RNA polymerase subunit beta'' (2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'')
Location	chr2 : 19165307 .. 19165969 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAAATGGAAGAATTTATAATCCCGATCCATGCAGTAACATCATTTTTAATCCATTCAAGTTGAATTGGTATTTTCTTCATTATCATTTTTGTGAAGAGACATCCACCAAAATTGATCTTGGACAATTTGTTTGTGAAAATGTATGTATAACCAAAAAAGGAACGCACCTAAAATCGGGTCAAGTTCTAATTGTTCAATTTGACTCTGTAGTAATAAGATCGGCTAAGCCTTATTTGGCTACTCCAGGAGCAACACTTCATGGTCATTATGGAGAAATCATTTATGAAGGGGATACATTAGTTACATTTATATATGAAAAATCGAGGTCTGGTGACATAACGCAAGGTCTTCCAAAAGTGGAACAAGTCTTAGAAGTTCGTTCGATTGATTCAATATCCATCAATCTAGAAAAGAGGATTGATAGTTGGAACGAACGTATAACAAGAATTCTTGGAAGTCCTTGGGGATTCTTGATTGGGGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAACAAGATCCAAAAGGTTTATCGATCACAAGGGGTGCAGATCCATAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTCCCGGAGAACTAA

mRNA sequence

ATGGATGAAAATGGAAGAATTTATAATCCCGATCCATGCATAATAAGATCGGCTAAGCCTTATTTGGCTACTCCAGGAGCAACACTTCATGGTCATTATGGAGAAATCATTTATGAAGGGGATACATTAGTTACATTTATATATGAAAAATCGAGGTCTGGTGACATAACGCAAGGTCTTCCAAAAGTGGAACAAGTCTTAGAAGTTCGTTCGATTGATTCAATATCCATCAATCTAGAAAAGAGGATTGATAGTTGGAACGAACGTATAACAAGAATTCTTGGAAGTCCTTGGGGATTCTTGATTGGGGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAACAAGATCCAAAAGGTTTATCGATCACAAGGGGTGCAGATCCATAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTCCCGGAGAACTAA

Coding sequence (CDS)

ATGGATGAAAATGGAAGAATTTATAATCCCGATCCATGCATAATAAGATCGGCTAAGCCTTATTTGGCTACTCCAGGAGCAACACTTCATGGTCATTATGGAGAAATCATTTATGAAGGGGATACATTAGTTACATTTATATATGAAAAATCGAGGTCTGGTGACATAACGCAAGGTCTTCCAAAAGTGGAACAAGTCTTAGAAGTTCGTTCGATTGATTCAATATCCATCAATCTAGAAAAGAGGATTGATAGTTGGAACGAACGTATAACAAGAATTCTTGGAAGTCCTTGGGGATTCTTGATTGGGGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAACAAGATCCAAAAGGTTTATCGATCACAAGGGGTGCAGATCCATAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTCCCGGAGAACTAA

Protein sequence

MDENGRIYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFFPEN

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo17925.1	Spo17925.1	mRNA

Homology

[Close]

BLAST of Spo17925.1 vs. NCBI nr
Match: gi|126022792|ref|NP_054922.2| (RNA polymerase beta'' subunit [Spinacia oleracea])

HSP 1 Score: 290.0 bits (741), Expect = 2.500e-75
Identity = 145/149 (97.32%), Postives = 146/149 (97.99%), Query Frame = 1


		  
Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1081 DSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1140

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 1141 SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 1200

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFFP 160
            HNRHIEIIVRQITSKVLVSEDGMSNVF P
Sbjct: 1201 HNRHIEIIVRQITSKVLVSEDGMSNVFLP 1229

[Close]

BLAST of Spo17925.1 vs. NCBI nr
Match: gi|133448|sp|P11704.1|RPOC2_SPIOL (RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'' (chloroplast) [Spinacia oleracea])

HSP 1 Score: 290.0 bits (741), Expect = 2.500e-75
Identity = 145/149 (97.32%), Postives = 146/149 (97.99%), Query Frame = 1


		  
Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1085 DSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1144

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 1145 SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 1204

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFFP 160
            HNRHIEIIVRQITSKVLVSEDGMSNVF P
Sbjct: 1205 HNRHIEIIVRQITSKVLVSEDGMSNVFLP 1233

[Close]

BLAST of Spo17925.1 vs. NCBI nr
Match: gi|90403635|gb|ABD93711.1| (RNA polymerase beta chain, partial (chloroplast) [Spinacia oleracea])

HSP 1 Score: 290.0 bits (741), Expect = 2.500e-75
Identity = 145/149 (97.32%), Postives = 146/149 (97.99%), Query Frame = 1


		  
Query: 11  DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
           D  +IRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 623 DSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 682

Query: 71  SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
           SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 683 SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 742

Query: 131 HNRHIEIIVRQITSKVLVSEDGMSNVFFP 160
           HNRHIEIIVRQITSKVLVSEDGMSNVF P
Sbjct: 743 HNRHIEIIVRQITSKVLVSEDGMSNVFLP 771

[Close]

BLAST of Spo17925.1 vs. NCBI nr
Match: gi|937546352|ref|YP_009169346.1| (RNA polymerase beta'' subunit (chloroplast) [Clematis terniflora])

HSP 1 Score: 282.3 bits (721), Expect = 5.200e-73
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 1


		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I + D  +IRSAKPYLATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1088 IVHVDYLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1147

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSIS+NLEKR++SWNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1148 LEVRSIDSISMNLEKRVESWNERITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 1207

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFFP 160
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVF P
Sbjct: 1208 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSP 1240

[Close]

BLAST of Spo17925.1 vs. NCBI nr
Match: gi|844170325|gb|AKM98248.1| (RNA polymerase beta subunit-2 (chloroplast) [Pulsatilla pratensis])

HSP 1 Score: 282.3 bits (721), Expect = 5.200e-73
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 1


		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I + D  +IRSAKPYLATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1090 IVHVDYLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1149

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSIS+NLEKR++SWNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1150 LEVRSIDSISMNLEKRVESWNERITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 1209

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFFP 160
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVF P
Sbjct: 1210 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSP 1242

[Close]

BLAST of Spo17925.1 vs. UniProtKB/TrEMBL
Match: A1XK05_SPIOL (RNA polymerase beta chain (Fragment) OS=Spinacia oleracea GN=rpoC2 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.700e-75
Identity = 145/149 (97.32%), Postives = 146/149 (97.99%), Query Frame = 1


		  
Query: 11  DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
           D  +IRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 623 DSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 682

Query: 71  SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
           SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 683 SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 742

Query: 131 HNRHIEIIVRQITSKVLVSEDGMSNVFFP 160
           HNRHIEIIVRQITSKVLVSEDGMSNVF P
Sbjct: 743 HNRHIEIIVRQITSKVLVSEDGMSNVFLP 771

[Close]

BLAST of Spo17925.1 vs. UniProtKB/TrEMBL
Match: A0A0H3XZB7_9MAGN (DNA-directed RNA polymerase subunit beta'' OS=Pulsatilla pratensis GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.600e-73
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 1


		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I + D  +IRSAKPYLATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1090 IVHVDYLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1149

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSIS+NLEKR++SWNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1150 LEVRSIDSISMNLEKRVESWNERITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 1209

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFFP 160
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVF P
Sbjct: 1210 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSP 1242

[Close]

BLAST of Spo17925.1 vs. UniProtKB/TrEMBL
Match: A0A0M3LBE2_CLETE (DNA-directed RNA polymerase subunit beta'' OS=Clematis terniflora GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.600e-73
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 1


		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I + D  +IRSAKPYLATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1088 IVHVDYLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1147

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSIS+NLEKR++SWNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1148 LEVRSIDSISMNLEKRVESWNERITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 1207

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFFP 160
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVF P
Sbjct: 1208 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSP 1240

[Close]

BLAST of Spo17925.1 vs. UniProtKB/TrEMBL
Match: A0A0H3Y3A9_9MAGN (DNA-directed RNA polymerase subunit beta'' OS=Anemone patens GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.600e-73
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 1


		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I + D  +IRSAKPYLATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1088 IVHVDYLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1147

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSIS+NLEKR++SWNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1148 LEVRSIDSISMNLEKRVESWNERITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 1207

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFFP 160
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVF P
Sbjct: 1208 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSP 1240

[Close]

BLAST of Spo17925.1 vs. UniProtKB/TrEMBL
Match: A0A0H3Y4J7_9MAGN (DNA-directed RNA polymerase subunit beta'' OS=Pulsatilla vernalis GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.600e-73
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 1


		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I + D  +IRSAKPYLATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1088 IVHVDYLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1147

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSIS+NLEKR++SWNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1148 LEVRSIDSISMNLEKRVESWNERITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 1207

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFFP 160
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVF P
Sbjct: 1208 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSP 1240

[Close]

BLAST of Spo17925.1 vs. ExPASy Swiss-Prot
Match: RPOC2_SPIOL (DNA-directed RNA polymerase subunit beta'' OS=Spinacia oleracea GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.600e-77
Identity = 145/149 (97.32%), Postives = 146/149 (97.99%), Query Frame = 1


		  
Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1085 DSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1144

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 1145 SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 1204

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFFP 160
            HNRHIEIIVRQITSKVLVSEDGMSNVF P
Sbjct: 1205 HNRHIEIIVRQITSKVLVSEDGMSNVFLP 1233

[Close]

BLAST of Spo17925.1 vs. ExPASy Swiss-Prot
Match: RPOC2_CHLSC (DNA-directed RNA polymerase subunit beta'' OS=Chloranthus spicatus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.600e-74
Identity = 138/153 (90.20%), Postives = 146/153 (95.42%), Query Frame = 1


		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I + D  +IRSAKP+LATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1092 IVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1151

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSISINLEKR++ WNERITRI+G PWGFLIGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1152 LEVRSIDSISINLEKRVEGWNERITRIIGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 1211

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFFP 160
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVF P
Sbjct: 1212 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSP 1244

[Close]

BLAST of Spo17925.1 vs. ExPASy Swiss-Prot
Match: RPOC2_NANDO (DNA-directed RNA polymerase subunit beta'' OS=Nandina domestica GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.100e-74
Identity = 137/153 (89.54%), Postives = 146/153 (95.42%), Query Frame = 1


		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I + D  +IRSAKPYLATPGAT+HGHYGEI+Y+GDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1082 IVHVDSLVIRSAKPYLATPGATVHGHYGEILYKGDTLVTFIYEKSRSGDITQGLPKVEQV 1141

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSIS+NLEKR++ WNERITRILG PWGFLIGAELTIAQSR+SLVNKIQKVYRSQ
Sbjct: 1142 LEVRSIDSISMNLEKRVEGWNERITRILGIPWGFLIGAELTIAQSRVSLVNKIQKVYRSQ 1201

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFFP 160
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVF P
Sbjct: 1202 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSP 1234

[Close]

BLAST of Spo17925.1 vs. ExPASy Swiss-Prot
Match: RPOC2_CARPA (DNA-directed RNA polymerase subunit beta'' OS=Carica papaya GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 8.000e-74
Identity = 136/153 (88.89%), Postives = 144/153 (94.12%), Query Frame = 1


		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I   D  +IRSAKPYLATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1090 IVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1149

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSIS+NLEKR++ WN+RITRILG PWGFLIGAELTI QSRISLVNKIQKVYRSQ
Sbjct: 1150 LEVRSIDSISLNLEKRVEGWNKRITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQ 1209

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFFP 160
            GVQIHNRHIEIIVRQITSKVLVSE+GMSNVF P
Sbjct: 1210 GVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLP 1242

[Close]

BLAST of Spo17925.1 vs. ExPASy Swiss-Prot
Match: RPOC2_RANMC (DNA-directed RNA polymerase subunit beta'' OS=Ranunculus macranthus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 8.000e-74
Identity = 137/153 (89.54%), Postives = 144/153 (94.12%), Query Frame = 1


		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I + D  +IRSAKPYLATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1087 IVDVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1146

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSIS+NLE R++ WNERITR LG PWGFLIGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1147 LEVRSIDSISMNLENRVEGWNERITRTLGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 1206

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFFP 160
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVF P
Sbjct: 1207 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSP 1239

[Close]

BLAST of Spo17925.1 vs. TAIR (Arabidopsis)
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 269.6 bits (688), Expect = 1.200e-72
Identity = 134/153 (87.58%), Postives = 140/153 (91.50%), Query Frame = 1


		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I   D  +IRSAKPYLATPGA +HGHY EI+YEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1088 IVQRDSAVIRSAKPYLATPGAKVHGHYSEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1147

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSIS+NLEKRI  WN+ ITRILG PWGFLIGAELTI QSRISLVNKIQKVYRSQ
Sbjct: 1148 LEVRSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQ 1207

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFFP 160
            GVQIHNRHIEIIVRQITSKVLVSE+GMSNVF P
Sbjct: 1208 GVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLP 1240

The following BLAST results are available for this feature:

BLAST of Spo17925.1 vs. NCBI nr
BLAST of Spo17925.1 vs. UniProtKB/TrEMBL
BLAST of Spo17925.1 vs. ExPASy Swiss-Prot
BLAST of Spo17925.1 vs. TAIR (Arabidopsis)

BLAST of Spo17925.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|126022792\|ref\|NP_054922.2\|	2.5e-75	97.3	RNA polymerase beta'' subunit ...	[more]
gi\|133448\|sp\|P11704.1\|RPOC2_SPIOL	2.5e-75	97.3	RecName: Full=DNA-directed RNA...	[more]
gi\|90403635\|gb\|ABD93711.1\|	2.5e-75	97.3	RNA polymerase beta chain, par...	[more]
gi\|937546352\|ref\|YP_009169346.1\|	5.2e-73	91.5	RNA polymerase beta'' subunit ...	[more]
gi\|844170325\|gb\|AKM98248.1\|	5.2e-73	91.5	RNA polymerase beta subunit-2 ...	[more]

BLAST of Spo17925.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A1XK05_SPIOL	1.7e-75	97.3	RNA polymerase beta chain (Fra...	[more]
A0A0H3XZB7_9MAGN	3.6e-73	91.5	DNA-directed RNA polymerase su...	[more]
A0A0M3LBE2_CLETE	3.6e-73	91.5	DNA-directed RNA polymerase su...	[more]
A0A0H3Y3A9_9MAGN	3.6e-73	91.5	DNA-directed RNA polymerase su...	[more]
A0A0H3Y4J7_9MAGN	3.6e-73	91.5	DNA-directed RNA polymerase su...	[more]

BLAST of Spo17925.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RPOC2_SPIOL	1.6e-77	97.3	DNA-directed RNA polymerase su...	[more]
RPOC2_CHLSC	1.6e-74	90.2	DNA-directed RNA polymerase su...	[more]
RPOC2_NANDO	2.1e-74	89.5	DNA-directed RNA polymerase su...	[more]
RPOC2_CARPA	8.0e-74	88.8	DNA-directed RNA polymerase su...	[more]
RPOC2_RANMC	8.0e-74	89.5	DNA-directed RNA polymerase su...	[more]

BLAST of Spo17925.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
ATCG00170.1	1.2e-72	87.5	DNA-directed RNA polymerase fa...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 106..148 score: 4.
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 6..148 score: 2.0
None	No IPR available	PANTHER	PTHR19376:SF38	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 6..148 score: 2.0
None	No IPR available	unknown	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 16..148 score: 5.49

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0009853	photorespiration
biological_process	GO:0006554	lysine catabolic process
biological_process	GO:0034968	histone lysine methylation
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0030076	light-harvesting complex
cellular_component	GO:0009573	chloroplast ribulose bisphosphate carboxylase complex
molecular_function	GO:0032549	ribonucleoside binding
molecular_function	GO:0030785	[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0018024	histone-lysine N-methyltransferase activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008777	acetylornithine deacetylase activity
molecular_function	GO:0046872	metal ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo19561	0.94	Barchart \| Table
Spo24719	0.90	Barchart \| Table
Spo17924	0.79	Barchart \| Table
Spo06201	0.73	Barchart \| Table
Spo05875	0.73	Barchart \| Table
Spo00626	0.72	Barchart \| Table
Spo04277	0.72	Barchart \| Table
Spo08440	0.72	Barchart \| Table
Spo17923	0.72	Barchart \| Table
Spo26127	0.72	Barchart \| Table
Spo25004	0.71	Barchart \| Table
Spo09413	0.71	Barchart \| Table
Spo02851	0.71	Barchart \| Table
Spo25555	0.71	Barchart \| Table
Spo19560	0.70	Barchart \| Table
Spo24718	0.70	Barchart \| Table
Spo25538	0.70	Barchart \| Table
Spo22572	0.69	Barchart \| Table
Spo06200	0.69	Barchart \| Table
Spo24708	0.68	Barchart \| Table
Spo24707	0.68	Barchart \| Table
Spo25537	0.68	Barchart \| Table
Spo04278	0.67	Barchart \| Table
Spo16490	0.66	Barchart \| Table
Spo22573	0.66	Barchart \| Table
Spo17010	0.66	Barchart \| Table
Spo21251	0.65	Barchart \| Table