Spo13649 (gene) | SpinachBase

Overview


Name	Spo13649
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein L14, chloroplastic
Location	chr2 : 22497574 .. 22499645 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCAACCTCAGACCCATTTGAATGTAGCAGACAACAGCGGGGCTCGAGAATTGATGTGTATTCGAATCATAGGAGCTAGCAACCGTCGATATGCTCGTATTGGTGACGTTATTGTTGCTGTGATCAAAGAAGCAATCCCCAACACGCCCTTAGAAAGATCAGAAGTGATCAGAGCTGTAGTTGTACGTACTTGTAAAGAACTAAAACGCGACAACGGTATGATAATACGATATGATGACAATGCTGCAGTTATCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCAATTGCCCGGGAATTGCGACAAAAATTTGCGAAAATAGTTTCATTAGCTCCTGAGGTATTATAAGATGATGAAGTAGAATATTTGAATGAAATAGTAGATTGTGTATCACGTATATAGCTTTTATTTTTAATTTTTTATTAATTAATAATAATAAATTAATAAAAAGACATGTTGATTATATCAAATTTTTGGGGCACCACTTATTTTAGTTCATCATGGGTAAGGACACTATTGCTGATATAATAACCTGTATACGAAATGCTGACATGAATAGAAAAGGAACGGTTCGAATAGTATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGCTTTATCGAAAATGCGAGAAAACATCAAGAAAGAAACAAATATTTTTTGGTTTTAACTCTGCGACATAGAAGAAACAAGAAAGGGCCTTATCTAAATACTTTCCATTTAAAAAGAGTCAGTCGACCTGGTCTACGAATCTATTCTAATTATCAACGAATTCCTAGAATTTTAGGTGGAATGGGGATTGCAATTCTTTCTACCTCGAGAGGTATAATGACAGATCGGGAGGCTCGACTAGAAGGAATTGGCGGAGAAATTTTATGTTATATATGGTAATCCCTATACTATTCGAATTGGATCCAAAATTTCCTACTTGTGAACAAAAAAAGAGAAAGGACAGCTTGTCTAATATCACTCCTCTATTAGTTGATACTTTAAGGGGGTTTTGTCTGGAATGAAAGAACAAAAATGGATTCATGAAGGTTTGATTACCGAATCACTTCCTAATGGTATGTTCTGGGTTCGTTTAGATAATGAAGATCCGATTCTGGGTTATGTTTCAGGACGGATACGACGTAGTTCTATACGAATTCTACCGGGAGATAGAGTTAAGATTGAAGTAAGCCGTTATGATTCAACTAGAGGTCGTATAATTTATAGACTGCGCAACAAGGATTCGAACGATTAAACAGTTTTTCAACTTCAACACTCCTTTTTACAAGAATACAATCCGAGATTCAAAATATTAAGAAACTTATTTTCTTCCAAGAAATAGATTTAAAATGAAAACTAAGGAATAATAAATATGAAAATAAGAGCTTCTGTTCGTCCAATTTGTGAAAAATGTCGACTGATCCGCAGACGGGGACGAATTATAGTAATTTGTTCTAACCCAAAACATAAACAACGACAAGGATAATAATTCTACTATAACTAAAAACGAAAAAGAATTTTCTATAAAGAATTGCTAAAAGATTTGATTGATGTAAAAAAAAACGGAAGGATTTGTTTTGACATGAAATGGATATATCCATATACCTTTGACTCATATTTATGAGATGAAAAAATATGGCAAAACCTATACCAAAAATTGGTTCACGTAGAAATGGACGTATTAGTTCGCGTAAAAGTGCACGTAAAATACCAAAGGGTGTTATTCATGTTCAAGCAAGTTTTAATAATACCATTGTAACTGTTACAGATGTACGAGGTCGAGTCGTTTCTTGGGCTTCTGCCGGTACTTGTGGATTCAGGGGTACAAAAAGAGGAACACCATTTGCGGCTCAAACCGCAGCGGGAAATGCTATTCGTACGGTGGTGGAACAAGGTATGCAACGAGCAGAAGTCATGATAAAAGGTCCTGGTCTCGGAAGGGATGCAGCATTACGGGCTATTCGTAGAAGCGGTATACTATTAAGTTTCGTGCGAGACGTAACCCCTATGCCGCATAATGGCTGTAGGCCTCCTAAAAAAAGACGCGTCTAG

mRNA sequence

ATGATTCAACCTCAGACCCATTTGAATGTAGCAGACAACAGCGGGGCTCGAGAATTGATGTGTATTCGAATCATAGGAGCTAGCAACCGTCGATATGCTCGTATTGGTGACGTTATTGTTGCTGTGATCAAAGAAGCAATCCCCAACACGCCCTTAGAAAGATCAGAAGTGATCAGAGCTGTAGTTGTACGTACTTGTAAAGAACTAAAACGCGACAACGGTATGATAATACGATATGATGACAATGCTGCAGTTATCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCAATTGCCCGGGAATTGCGACAAAAATTTGCGAAAATAGTTTCATTAGCTCCTGAGGGGGTTTTGTCTGGAATGAAAGAACAAAAATGGATTCATGAAGGTTTGATTACCGAATCACTTCCTAATGATGTACGAGGTCGAGTCGTTTCTTGGGCTTCTGCCGGTACTTGTGGATTCAGGGGTACAAAAAGAGGAACACCATTTGCGGCTCAAACCGCAGCGGGAAATGCTATTCGTACGGTGGTGGAACAAGGTATGCAACGAGCAGAAGTCATGATAAAAGGTCCTGGTCTCGGAAGGGATGCAGCATTACGGGCTATTCGTAGAAGCGGTATACTATTAAGTTTCGTGCGAGACGTAACCCCTATGCCGCATAATGGCTGTAGGCCTCCTAAAAAAAGACGCGTCTAG

Coding sequence (CDS)

ATGATTCAACCTCAGACCCATTTGAATGTAGCAGACAACAGCGGGGCTCGAGAATTGATGTGTATTCGAATCATAGGAGCTAGCAACCGTCGATATGCTCGTATTGGTGACGTTATTGTTGCTGTGATCAAAGAAGCAATCCCCAACACGCCCTTAGAAAGATCAGAAGTGATCAGAGCTGTAGTTGTACGTACTTGTAAAGAACTAAAACGCGACAACGGTATGATAATACGATATGATGACAATGCTGCAGTTATCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCAATTGCCCGGGAATTGCGACAAAAATTTGCGAAAATAGTTTCATTAGCTCCTGAGGGGGTTTTGTCTGGAATGAAAGAACAAAAATGGATTCATGAAGGTTTGATTACCGAATCACTTCCTAATGATGTACGAGGTCGAGTCGTTTCTTGGGCTTCTGCCGGTACTTGTGGATTCAGGGGTACAAAAAGAGGAACACCATTTGCGGCTCAAACCGCAGCGGGAAATGCTATTCGTACGGTGGTGGAACAAGGTATGCAACGAGCAGAAGTCATGATAAAAGGTCCTGGTCTCGGAAGGGATGCAGCATTACGGGCTATTCGTAGAAGCGGTATACTATTAAGTTTCGTGCGAGACGTAACCCCTATGCCGCATAATGGCTGTAGGCCTCCTAAAAAAAGACGCGTCTAG

Protein sequence

MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPEGVLSGMKEQKWIHEGLITESLPNDVRGRVVSWASAGTCGFRGTKRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo13649.1	Spo13649.1	mRNA

Homology

[Close]

BLAST of Spo13649.1 vs. NCBI nr
Match: gi|357453261|ref|XP_003596907.1| (50S ribosomal protein L14 [Medicago truncatula])

HSP 1 Score: 265.8 bits (678), Expect = 7.300e-68
Identity = 139/197 (70.56%), Postives = 158/197 (80.20%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQT+LNVADNSGARELMCIRIIGASNRRYA IGD++VAVIK+A+PN+ LERSEVIRA
Sbjct: 1   MIQPQTYLNVADNSGARELMCIRIIGASNRRYAYIGDIVVAVIKKAVPNSSLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPE 120
           V+VRTCKELKR NG+II+YDDNAAV+ID+EGNPKGTRIF AIARELRQ  F  +      
Sbjct: 61  VIVRTCKELKRSNGIIIKYDDNAAVLIDKEGNPKGTRIFSAIARELRQLNFVTV------ 120

Query: 121 GVLSGMKEQKWIHEGLITESLPNDVRGRVVSWASAGTCGFRGTKRGTPFAAQTAAGNAIR 180
                                  DVRGRV+SW+SAG+CGF+GT+RGTPFAAQTAA NAIR
Sbjct: 121 ----------------------TDVRGRVISWSSAGSCGFKGTRRGTPFAAQTAAANAIR 169

Query: 181 TVVEQGMQRAEVMIKGP 197
           TVV+QGMQRA V+IKGP
Sbjct: 181 TVVDQGMQRAVVIIKGP 169

[Close]

BLAST of Spo13649.1 vs. NCBI nr
Match: gi|11497563|ref|NP_054971.1| (ribosomal protein L14 [Spinacia oleracea])

HSP 1 Score: 233.0 bits (593), Expect = 5.300e-58
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE
Sbjct: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 119

[Close]

BLAST of Spo13649.1 vs. NCBI nr
Match: gi|902181471|gb|KNA09754.1| (hypothetical protein SOVF_150420, partial [Spinacia oleracea])

HSP 1 Score: 230.7 bits (587), Expect = 2.600e-57
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARE MCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARESMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE
Sbjct: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 119

[Close]

BLAST of Spo13649.1 vs. NCBI nr
Match: gi|910354353|ref|YP_009160839.1| (ribosomal protein L14 (chloroplast) [Haloxylon ammodendron])

HSP 1 Score: 229.6 bits (584), Expect = 5.800e-57
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNR+YARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRQYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           V+VRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKF KIVSLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFTKIVSLAPE 119

[Close]

BLAST of Spo13649.1 vs. NCBI nr
Match: gi|982898198|ref|YP_009221844.1| (ribosomal protein L14 (chloroplast) [Mesembryanthemum crystallinum])

HSP 1 Score: 228.8 bits (582), Expect = 9.900e-57
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           V+VRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTR+FGAIARELRQ F KIVSLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRVFGAIARELRQNFTKIVSLAPE 119

[Close]

BLAST of Spo13649.1 vs. UniProtKB/TrEMBL
Match: G7IRF6_MEDTR (50S ribosomal protein L14 OS=Medicago truncatula GN=MTR_2g087550 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 5.100e-68
Identity = 139/197 (70.56%), Postives = 158/197 (80.20%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQT+LNVADNSGARELMCIRIIGASNRRYA IGD++VAVIK+A+PN+ LERSEVIRA
Sbjct: 1   MIQPQTYLNVADNSGARELMCIRIIGASNRRYAYIGDIVVAVIKKAVPNSSLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPE 120
           V+VRTCKELKR NG+II+YDDNAAV+ID+EGNPKGTRIF AIARELRQ  F  +      
Sbjct: 61  VIVRTCKELKRSNGIIIKYDDNAAVLIDKEGNPKGTRIFSAIARELRQLNFVTV------ 120

Query: 121 GVLSGMKEQKWIHEGLITESLPNDVRGRVVSWASAGTCGFRGTKRGTPFAAQTAAGNAIR 180
                                  DVRGRV+SW+SAG+CGF+GT+RGTPFAAQTAA NAIR
Sbjct: 121 ----------------------TDVRGRVISWSSAGSCGFKGTRRGTPFAAQTAAANAIR 169

Query: 181 TVVEQGMQRAEVMIKGP 197
           TVV+QGMQRA V+IKGP
Sbjct: 181 TVVDQGMQRAVVIIKGP 169

[Close]

BLAST of Spo13649.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QR25_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_150420 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.800e-57
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARE MCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARESMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE
Sbjct: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 119

[Close]

BLAST of Spo13649.1 vs. UniProtKB/TrEMBL
Match: A0A0K0K9G2_9CARY (50S ribosomal protein L14, chloroplastic OS=Haloxylon persicum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 4.100e-57
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNR+YARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRQYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           V+VRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKF KIVSLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFTKIVSLAPE 119

[Close]

BLAST of Spo13649.1 vs. UniProtKB/TrEMBL
Match: A0A0K0K8A5_9CARY (50S ribosomal protein L14, chloroplastic OS=Haloxylon ammodendron GN=rpl14 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 4.100e-57
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNR+YARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRQYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           V+VRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKF KIVSLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFTKIVSLAPE 119

[Close]

BLAST of Spo13649.1 vs. UniProtKB/TrEMBL
Match: A0A0G2R7W9_MESCR (50S ribosomal protein L14, chloroplastic OS=Mesembryanthemum crystallinum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 6.900e-57
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           V+VRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTR+FGAIARELRQ F KIVSLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRVFGAIARELRQNFTKIVSLAPE 119

[Close]

BLAST of Spo13649.1 vs. ExPASy Swiss-Prot
Match: RK14_SPIOL (50S ribosomal protein L14, chloroplastic OS=Spinacia oleracea GN=rpl14 PE=1 SV=2)

HSP 1 Score: 233.0 bits (593), Expect = 3.300e-60
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE
Sbjct: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 119

[Close]

BLAST of Spo13649.1 vs. ExPASy Swiss-Prot
Match: RK14_COFAR (50S ribosomal protein L14, chloroplastic OS=Coffea arabica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.900e-56
Identity = 111/120 (92.50%), Postives = 115/120 (95.83%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNRRYA IGDVIVAVIKEA+PN PLERSEV+RA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVVRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPE 120
           V+VRTCKELKRDNGMIIRYDDNAAV+IDQEGNPKGTRIFGAIARELRQ  F KIVSLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPE 120

[Close]

BLAST of Spo13649.1 vs. ExPASy Swiss-Prot
Match: RK14_EUCGG (50S ribosomal protein L14, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.900e-56
Identity = 110/120 (91.67%), Postives = 116/120 (96.67%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQ+HLNVADNSGARELMCIRIIGASNRRYA IGD+IVAVIKEA+PNTPLERSEVIRA
Sbjct: 1   MIQPQSHLNVADNSGARELMCIRIIGASNRRYAHIGDIIVAVIKEALPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPE 120
           V+VRTCKELKRDNGMIIRYDDNAAV+IDQEGNPKGTR+FGAIARELRQ  F KIVSLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPE 120

[Close]

BLAST of Spo13649.1 vs. ExPASy Swiss-Prot
Match: RK14_PLAOC (50S ribosomal protein L14, chloroplastic OS=Platanus occidentalis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.900e-56
Identity = 111/120 (92.50%), Postives = 115/120 (95.83%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNRRYA IGDVIVAVIKEA+PN PLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPE 120
           V+VRTCKELKRDNGMIIRYDDNAAV+IDQEGNPKGTR+FGAIARELRQ  F KIVSLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLSFTKIVSLAPE 120

[Close]

BLAST of Spo13649.1 vs. ExPASy Swiss-Prot
Match: RK14_CITSI (50S ribosomal protein L14, chloroplastic OS=Citrus sinensis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 8.400e-56
Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNRRYA IGDVIVAVIKEA+PNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPE 120
           V+VRTCKEL+RDNGMIIRYDDNAAV+ID EGNPKGTR+FGAIARELRQ  F KIVSLAPE
Sbjct: 61  VIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPE 120

[Close]

BLAST of Spo13649.1 vs. TAIR (Arabidopsis)
Match: ATCG00780.1 (ribosomal protein L14)

HSP 1 Score: 213.4 bits (542), Expect = 1.500e-55
Identity = 109/120 (90.83%), Postives = 114/120 (95.00%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQT+LNVADNSGARELMCIRIIGASNRRYA IGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPE 120
           V+VRTCKELKR+NG IIRYDDNAAV+IDQEGNPKGTR+FGAI RELRQ  F KIVSLAPE
Sbjct: 61  VIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPE 120

[Close]

BLAST of Spo13649.1 vs. TAIR (Arabidopsis)
Match: ATCG00750.1 (ribosomal protein S11)

HSP 1 Score: 184.1 bits (466), Expect = 9.900e-47
Identity = 96/133 (72.18%), Postives = 107/133 (80.45%), Query Frame = 1

		  
Query: 104 RELRQKFAKIVSLAPEGVLSGMKEQKWIHEGLITESLPNDVRGRVVSWASAGTCGFRGTK 163
           +  R    K V   P+GV+     Q   +  ++T +   DVRGRV+SW+SAGTCGFRGT+
Sbjct: 12  KNTRSGSRKNVRRIPKGVIH---VQASFNNTIVTVT---DVRGRVISWSSAGTCGFRGTR 71

Query: 164 RGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPM 223
           RGTPFAAQTAAGNAIR VV+QGMQRAEV IKGPGLGRDAALRAIRRSGILLSFVRDVTPM
Sbjct: 72  RGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPM 131

Query: 224 PHNGCRPPKKRRV 237
           PHNGCRPPKKRRV
Sbjct: 132 PHNGCRPPKKRRV 138

[Close]

BLAST of Spo13649.1 vs. TAIR (Arabidopsis)
Match: AT5G46160.1 (Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 94.0 bits (232), Expect = 1.300e-19
Identity = 53/124 (42.74%), Postives = 79/124 (63.71%), Query Frame = 1

		  
Query: 2   IQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAV 61
           IQ  T L V DNSGA+++MCI+ +    ++ AR+GD IVA +KEA+PN  +++  V+  V
Sbjct: 48  IQMGTVLKVVDNSGAKKVMCIQAL--KGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGV 107

Query: 62  VVRTCKELKRDNGMIIRYDDNAAVIIDQ-------EGNPKGTRIFGAIARELR-QKFAKI 118
           VVR   +  R +G  +R+DDNA V++D        +  P GTR+FG +  ELR +K  KI
Sbjct: 108 VVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKI 167

[Close]

BLAST of Spo13649.1 vs. TAIR (Arabidopsis)
Match: AT1G04480.1 (Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 70.1 bits (170), Expect = 2.100e-12
Identity = 40/114 (35.09%), Postives = 67/114 (58.77%), Query Frame = 1

		  
Query: 8   LNVADNSGARELMCIRIIGASNRRY----ARIGDVIVAVIKEAIPNTPLERSEVIRAVVV 67
           +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AV+V
Sbjct: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIV 85

Query: 68  RTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLA 118
           R  K  +R +G+ + ++DNA VI++ +G  KG+ I G I +E    + +I S A
Sbjct: 86  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAA 136

[Close]

BLAST of Spo13649.1 vs. TAIR (Arabidopsis)
Match: AT2G33370.1 (Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 70.1 bits (170), Expect = 2.100e-12
Identity = 40/114 (35.09%), Postives = 67/114 (58.77%), Query Frame = 1

		  
Query: 8   LNVADNSGARELMCIRIIGASNRRY----ARIGDVIVAVIKEAIPNTPLERSEVIRAVVV 67
           +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AV+V
Sbjct: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIV 85

Query: 68  RTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLA 118
           R  K  +R +G+ + ++DNA VI++ +G  KG+ I G I +E    + +I S A
Sbjct: 86  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAA 136

The following BLAST results are available for this feature:

BLAST of Spo13649.1 vs. NCBI nr
BLAST of Spo13649.1 vs. UniProtKB/TrEMBL
BLAST of Spo13649.1 vs. ExPASy Swiss-Prot
BLAST of Spo13649.1 vs. TAIR (Arabidopsis)

BLAST of Spo13649.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|357453261\|ref\|XP_003596907.1\|	7.3e-68	70.5	50S ribosomal protein L14 [Med...	[more]
gi\|11497563\|ref\|NP_054971.1\|	5.3e-58	100.	ribosomal protein L14 [Spinaci...	[more]
gi\|902181471\|gb\|KNA09754.1\|	2.6e-57	99.1	hypothetical protein SOVF_1504...	[more]
gi\|910354353\|ref\|YP_009160839.1\|	5.8e-57	97.4	ribosomal protein L14 (chlorop...	[more]
gi\|982898198\|ref\|YP_009221844.1\|	9.9e-57	96.6	ribosomal protein L14 (chlorop...	[more]

BLAST of Spo13649.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
G7IRF6_MEDTR	5.1e-68	70.5	50S ribosomal protein L14 OS=M...	[more]
A0A0K9QR25_SPIOL	1.8e-57	99.1	Uncharacterized protein (Fragm...	[more]
A0A0K0K9G2_9CARY	4.1e-57	97.4	50S ribosomal protein L14, chl...	[more]
A0A0K0K8A5_9CARY	4.1e-57	97.4	50S ribosomal protein L14, chl...	[more]
A0A0G2R7W9_MESCR	6.9e-57	96.6	50S ribosomal protein L14, chl...	[more]

BLAST of Spo13649.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
RK14_SPIOL	3.3e-60	100.	50S ribosomal protein L14, chl...	[more]
RK14_COFAR	4.9e-56	92.5	50S ribosomal protein L14, chl...	[more]
RK14_EUCGG	4.9e-56	91.6	50S ribosomal protein L14, chl...	[more]
RK14_PLAOC	4.9e-56	92.5	50S ribosomal protein L14, chl...	[more]
RK14_CITSI	8.4e-56	91.6	50S ribosomal protein L14, chl...	[more]

BLAST of Spo13649.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
ATCG00780.1	1.5e-55	90.8	ribosomal protein L14	[more]
ATCG00750.1	9.9e-47	72.1	ribosomal protein S11	[more]
AT5G46160.1	1.3e-19	42.7	Ribosomal protein L14p/L23e fa...	[more]
AT1G04480.1	2.1e-12	35.0	Ribosomal protein L14p/L23e fa...	[more]
AT2G33370.1	2.1e-12	35.0	Ribosomal protein L14p/L23e fa...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000218	Ribosomal protein L14P	GENE3D	2.40.150.20		coord: 1..119 score: 6.0
IPR000218	Ribosomal protein L14P	HAMAP	MF_01367	Ribosomal_L14	coord: 1..121 score: 25
IPR000218	Ribosomal protein L14P	PANTHER	PTHR11761	50S/60S RIBOSOMAL PROTEIN L14/L23	coord: 1..121 score: 2.8
IPR000218	Ribosomal protein L14P	PFAM	PF00238	Ribosomal_L14	coord: 1..119 score: 2.8
IPR000218	Ribosomal protein L14P	SMART	SM01374	Ribosomal_L14_2	coord: 1..121 score: 9.5
IPR000218	Ribosomal protein L14P	unknown	SSF50193	Ribosomal protein L14	coord: 1..119 score: 4.97
IPR001971	Ribosomal protein S11	GENE3D	3.30.420.80		coord: 143..236 score: 9.0
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 54..236 score: 25
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 143..235 score: 8.4
IPR005745	Ribosomal protein L14P, bacterial-type	TIGRFAMs	TIGR01067	TIGR01067	coord: 1..119 score: 1.7
IPR018102	Ribosomal S11, conserved site	PROSITE	PS00054	RIBOSOMAL_S11	coord: 204..226 scor
IPR019972	Ribosomal protein L14P, conserved site	PROSITE	PS00049	RIBOSOMAL_L14	coord: 60..86 scor
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 143..236 score: 2.16

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005524	ATP binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo19606	0.97	Barchart \| Table
Spo17932	0.92	Barchart \| Table
Spo20629	0.91	Barchart \| Table
Spo19607	0.89	Barchart \| Table
Spo13650	0.88	Barchart \| Table
Spo06567	0.81	Barchart \| Table
Spo09675	0.76	Barchart \| Table
Spo17927	0.67	Barchart \| Table
Spo22439	0.65	Barchart \| Table