Spo02643 (gene)

Overview
NameSpo02643
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr2 : 27849026 .. 27852755 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGCTTCTGTTGCCACATCTGTTGAGATAGATTTTCTTTTGTTGTTCTGCAACTCAGTCTCGCAGTGCCATAGGCTTAGACCTCAGGTTCATGTTGTAGATTCAAAGAATTTCTTTCTATTGAAGAATCAGGCTTCTTTAAGTTTGTACACCTAGCCGATGGTCCCACCCTTAAAGCCTAGGTATTAGCTATTAAGGCTTTCCTGATCAATCAATTGCACTTGATGTCATTTTACAGGCTTCTTATGTAATTTCACAGAAACAGGTATTGATGGGGTGTAATGGAGTCATTTCAGTGGTGGCAAAGTGGCTCGCATTCAAGAAACCATCATTGACAAGAAGATCGGCTATAAGGGGTAGTGCATACTACAACTTTTTTTCAATGAATGCATGATCATCATACTTTAAAGGCTAAGTGTACACTTATGTAACAATAGCTTATTTTACCTAATTTCCTAATCTAGGACATACACCAGGGTCACATTCTTGCAGGCTCAAGGTTTACAAGAGGTTGAAGGAAAGTCCATCAGATTTTGGTTAACTCTCTGCTGGGAATTTATTATGTGCTGACGCAAGTTACTCCTGCTTCTTTCAAGAACAGCAATCTTAATCATCAAATTTATAATAACAATAATCACAGTATTAATAATCTTTCTAGGTTTCCTTGTACTAATTTTAGAAGCAATTATATATATTCTTGAAAATAAAGTAGACGTTGCTTAGTATTCCACTACTATTATTTTACATTTGTAGGTAGTATCAATGAATTCATATATTATTCAAAGTTAGTTTGCAATCATATTGTCCTAACCTAATTTCCTATATTAATTAGGGTCGGGATTTGCTTTGCGTTTATGTAATTATTTTCCTATAACTTGGGGGACTGTGCGCGATAGCGCACAGGCCAACAACTAGTTTATTAAACATAGGAAGTTTTATTTTTGATGAATGGATCGATATCATGGTAGGTTTGAACAAAATGAATATTAAGGTAGTTCTTTTCAAAAGTCAATATATAGATAGATATATCTGGGTTTATACCTTGTAAAATCGAAATCTCGCCTTCAGGCCCCCACTGCCCGACCACTCGAGCATGTTAGGGGGAGATAAGCCACAACATGTGCCTCAGCTAGCAATGCAAAAGGGGTTGCGTTTCTCACAAAATTTTGACCTTGAACTCTAAATACCCCCTTAATGTTTAGTTGTTTATCAACTAAGATAAGCACTTGACTCATTAGTTGATATACCTTAGTTGAGCTTAAAGATGATTGTGAGTCGTGTTGGACCGTTTGTTGTGAGCCTGCATGCTATGGTCCTGACACAAATCAAGCTCACTTGTTTTCGTGTTGGGCCGAAAATTTCAAAAGGGTTTCCCAATCTCACATGCCCTCGTGTCTTGTCGTTCTTCGTGTCTGAGCTAATTTCACTCAATTTAACGTGATTTGTTGTACTCCATCCGTATTTTTTTAGGAGTCACGTGTTGATTGGAACAAGTATTAAGGATGTATAGTTAAATTTAAAATAATAATGATACAAGTGGGGTAGTTGACAATAAAGAAATATAAAAAAACAAGTGGGATGTAAAGTTTACCAAAAATGAAATTATTAATGATTAAAATGGGCTAATAAAAAAATTAAAATAATAATAAGCAATTGGAAAGTAGGTGTGAAAGTTAACAAAAATGAAATTATGACTCCTACAAAAATACGACTGGAAGTAATATTTGTGACTCCTAAAAAAACACAATGGGAGTATTAAACTTTACGGTGACTTTTGTTATTGTGCTTTTTCGGGAAAAAAATGCGCCACAAACCCATCACACTCCACCCCTACAATTTGATACAAATTTGTAGACCGCCTAACGGTTAGACCAATTTGTTGTCACCTAATAAAATTGATTAGTTAAGCATTGAACCAATTAGTTAAATAATGAAATTGATTAGTTAAGCAATGAGATCAATTAGTTAAGATTTTATGAGTTTTAGTTAATAATAAGTTTGTTCAAAAATAATATCTATTCGACTCATAAATTTAACTATTTGTTTTTATACCTTAACTATTTTGTTATTCAATTTAGTTATGATTTTATTACTTTTAGTTATGTTTTACACTTATTTAGTTAGTACCAAAAAAAAATGGTATAACCATTAGGCGATTTTACACAAAAGCTTTTGACAATTTATACCTGCGTTAGCCGTGTTTTTTTCCGTGCCCGTACCATATTGTGCTTTTTTCGGGCTGAGATGGGGCAGAGCCTCGCCCCGGACTGGGCCCAGTGCCATTTTTAGCTCAACTGACGTTTATTTTTCCTGTTGGCTGTTGCTAATTATGGCGAAGAAGGTTTAGGGAGGGAGGATTGAAGAAGACCGTATCTCCAATTTCTGCCAGAGTCCATGGTAATCCCTCTTCTCCTTCATTATACTATGTTTTTCTCTCTCTAAACACGACGATGGAAACCCTAATTTGTAACTCGTCTTGATTGTTTATATCCACATTCATTAGTATTTTACTTTTAATTGATTTTAGGGTTGCTGTCAATGTGTGTGAATTTGAAATTCAGTTCGAACCCTAAAATTGAATTTGACAAGATTTAATTACGAATAAAAATAAATAATTCAGTTATGTTGCAGTGAATTGGAATTATTTTGGTCTGTTCAAATTGATTGAATTCAAAGATTACTTCTTTTTCAGTCTGATAAGATTAACTTTTGATTTCATTGTCTATTGTTCGAGAAAATTATTGATGGTAGTGTATAGTCCTTCAATGTATGATTGCATTGGAGATGGGGTACGATAACCCTGCCTTATTCTGTTGGTAAATCCCTAAAGTGGAGGACTGTGAGTTCCCAATGCCCAGCAAGACCAGCAGATACTCCTTAGGCCGCTGCTTTGAATCCAGAATATTTTGTTTTACCTTGTATATTTCTGCTCATTTGATAAATTATGTGCGTTATCCAACTTTATCAAATGAGGCAATGAGCAAAAAAGAACACTTCAGGTGCACCTAGCTGCTGGTGAATTAAGAATTTTCACATATTTATACCGTTCTTTGTTGTGAAGTTGTCTTGAGTGAAGTCCTTTTATTTCTTGATCAGGGACCGAGTGCATTCCCTATTCCCTAGGAGGCTAGGACTTCTGTTTGGAAACAGCATGCCATTTTGTGAATATAGTTTTCTGAAACAGTTACCGTATCTAATCTGACTGAGAGAATGAGATAGGGATATGAAGTACTTCATATTATTTTGAGTTTTGGGGGTTGATATGCAGGCATGCTTCCCTAATTACTGTTCTATAAGAGTCCTAGTTTGATACATGAAAAATGAAATTAAGTATGTTGTCATATCCTAGATTGAATTTATTAACAGGGTATGGTTACATCTATTTAAATGGGAACAAATTAAAGCTCAGTTGATAGAGCCTAGAACTCTAGTTTGGTTAAAACAGATGATCCTTCAATCGCTGGATCGAATCCAGCACTTCAATATTATTATTATTTTTTTTGCTTTTCCAGTTTTTACTTAATTTAAAGCATGAATTTTTCCTTCTAGATATGATAACATGGATTTTTCTATAATCGGTACTTCAGTTATCAAAGTTATGATAGTTTTTGTTTTTGTGATAGAAGCCTCTGTGAGGGGATCCAGGAGAAGGCTTCTGAAGGGTAAAATCAGTAATCACTTGTACTGTGAAATATCAGCCAAAAGAGTTAAGGCAAAGAGATTTTGA

mRNA sequence

ATGGTGGCTTCTGTTGCCACATCTGTTGAGATAGATTTTCTTTTGTTGTTCTGCAACTCAGTCTCGCAGTGCCATAGGCTTAGACCTCAGGACATACACCAGGGTCACATTCTTGCAGGCTCAAGGTTTAGGGAGGGAGGATTGAAGAAGACCGTATCTCCAATTTCTGCCAGAGTCCATGAAGCCTCTGTGAGGGGATCCAGGAGAAGGCTTCTGAAGGGTAAAATCAGTAATCACTTGTACTGTGAAATATCAGCCAAAAGAGTTAAGGCAAAGAGATTTTGA

Coding sequence (CDS)

ATGGTGGCTTCTGTTGCCACATCTGTTGAGATAGATTTTCTTTTGTTGTTCTGCAACTCAGTCTCGCAGTGCCATAGGCTTAGACCTCAGGACATACACCAGGGTCACATTCTTGCAGGCTCAAGGTTTAGGGAGGGAGGATTGAAGAAGACCGTATCTCCAATTTCTGCCAGAGTCCATGAAGCCTCTGTGAGGGGATCCAGGAGAAGGCTTCTGAAGGGTAAAATCAGTAATCACTTGTACTGTGAAATATCAGCCAAAAGAGTTAAGGCAAAGAGATTTTGA

Protein sequence

MVASVATSVEIDFLLLFCNSVSQCHRLRPQDIHQGHILAGSRFREGGLKKTVSPISARVHEASVRGSRRRLLKGKISNHLYCEISAKRVKAKRF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo02643.1Spo02643.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo02643.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo02643.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo02643.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo02643.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0006782 protoporphyrinogen IX biosynthetic process
biological_process GO:0007030 Golgi organization
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0080005 photosystem stoichiometry adjustment
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0016049 cell growth
biological_process GO:0007033 vacuole organization
biological_process GO:0006606 protein import into nucleus
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0000902 cell morphogenesis
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0009579 thylakoid
cellular_component GO:0008287 protein serine/threonine phosphatase complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009941 chloroplast envelope
molecular_function GO:0004722 protein serine/threonine phosphatase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0004853 uroporphyrinogen decarboxylase activity
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0016740 transferase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo270810.77Barchart | Table
Spo205440.75Barchart | Table
Spo130290.74Barchart | Table
Spo198500.73Barchart | Table
Spo143420.73Barchart | Table
Spo092900.72Barchart | Table
Spo012610.72Barchart | Table
Spo261680.71Barchart | Table
Spo121070.71Barchart | Table
Spo066790.71Barchart | Table
Spo115090.71Barchart | Table
Spo015790.70Barchart | Table
Spo198740.70Barchart | Table
Spo103160.70Barchart | Table
Spo271020.70Barchart | Table
Spo069490.70Barchart | Table
Spo037360.70Barchart | Table
Spo166520.69Barchart | Table
Spo173290.69Barchart | Table
Spo002830.69Barchart | Table
Spo248570.68Barchart | Table
Spo036540.68Barchart | Table
Spo200710.68Barchart | Table
Spo050930.68Barchart | Table
Spo268110.68Barchart | Table
Spo115200.68Barchart | Table
Spo128940.68Barchart | Table
Spo134820.68Barchart | Table
Spo135180.68Barchart | Table
Spo139410.68Barchart | Table
Spo139560.68Barchart | Table
Spo020680.68Barchart | Table
Spo235880.67Barchart | Table
Spo216910.67Barchart | Table
Spo217680.67Barchart | Table
Spo108610.67Barchart | Table
Spo206860.67Barchart | Table
Spo173710.67Barchart | Table
Spo003440.67Barchart | Table
Spo192450.67Barchart | Table
Spo273740.66Barchart | Table
Spo018400.66Barchart | Table
Spo025130.66Barchart | Table
Spo097520.66Barchart | Table
Spo119180.66Barchart | Table
Spo132020.66Barchart | Table
Spo140960.66Barchart | Table
Spo179590.66Barchart | Table
Spo197880.66Barchart | Table
Spo206000.66Barchart | Table
Spo210670.66Barchart | Table
Spo227600.66Barchart | Table
Spo253300.66Barchart | Table
Spo002250.66Barchart | Table
Spo195990.65Barchart | Table
Spo069190.65Barchart | Table
Spo132140.65Barchart | Table
Spo099930.65Barchart | Table
Spo209520.65Barchart | Table
Spo094990.65Barchart | Table
Spo197510.65Barchart | Table