Spo16514.1 (mRNA)

Overview
NameSpo16514.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00425 : 31918 .. 32463 (+)
Sequence length546
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAGTGTAGCATTGCATTTGTTGTGACACTTCTTTTAGTGCAATCTGCCTTGGCAGCTAGAAATGCACCAGTAAAAACCACCACAACAACCACCAATGTGGTGGACACCACTAAGAAAGGTGTAGTTGCACCAACAACTGACAAGAAGAACTTTGTTTCTTTCGGTGGGATCGGAGGAGCCGCTGGCGCTGGTGTTGGCGTTGTAGGAGGACTACCCGTTGGTGGTATCGGTGCTGGTGGACTAGGAGGAGCTGGTGGTCTAGGAGGTTTGGGTGGAGCTGGAGCTGGTGGACTAGGAGGATTGGGTGGAGCTGGTGGCTTAGGCGGTGCTGGAGGAGGACTTGGTGGTTTAGGCGGTGCTGGGGGAGGACTTGGTGGTTTAGGCGGTGGTACTGGAGGACTTGGTGGTTTAGGTGGCGGTGCTGGAGGACTTGGTGGGTTAGGTGGCGGTGCGGGAGGCCTTGGTGGTGCTGGTGGAGGTGCTGGTTTGGGTGGACTTGGTGGGGCAGGTTGCGGTGGTGGTCTTCCAGTTATTCCTTAA

mRNA sequence

ATGGGTAAGTGTAGCATTGCATTTGTTGTGACACTTCTTTTAGTGCAATCTGCCTTGGCAGCTAGAAATGCACCAGTAAAAACCACCACAACAACCACCAATGTGGTGGACACCACTAAGAAAGGTGTAGTTGCACCAACAACTGACAAGAAGAACTTTGTTTCTTTCGGTGGGATCGGAGGAGCCGCTGGCGCTGGTGTTGGCGTTGTAGGAGGACTACCCGTTGGTGGTATCGGTGCTGGTGGACTAGGAGGAGCTGGTGGTCTAGGAGGTTTGGGTGGAGCTGGAGCTGGTGGACTAGGAGGATTGGGTGGAGCTGGTGGCTTAGGCGGTGCTGGAGGAGGACTTGGTGGTTTAGGCGGTGCTGGGGGAGGACTTGGTGGTTTAGGCGGTGGTACTGGAGGACTTGGTGGTTTAGGTGGCGGTGCTGGAGGACTTGGTGGGTTAGGTGGCGGTGCGGGAGGCCTTGGTGGTGCTGGTGGAGGTGCTGGTTTGGGTGGACTTGGTGGGGCAGGTTGCGGTGGTGGTCTTCCAGTTATTCCTTAA

Coding sequence (CDS)

ATGGGTAAGTGTAGCATTGCATTTGTTGTGACACTTCTTTTAGTGCAATCTGCCTTGGCAGCTAGAAATGCACCAGTAAAAACCACCACAACAACCACCAATGTGGTGGACACCACTAAGAAAGGTGTAGTTGCACCAACAACTGACAAGAAGAACTTTGTTTCTTTCGGTGGGATCGGAGGAGCCGCTGGCGCTGGTGTTGGCGTTGTAGGAGGACTACCCGTTGGTGGTATCGGTGCTGGTGGACTAGGAGGAGCTGGTGGTCTAGGAGGTTTGGGTGGAGCTGGAGCTGGTGGACTAGGAGGATTGGGTGGAGCTGGTGGCTTAGGCGGTGCTGGAGGAGGACTTGGTGGTTTAGGCGGTGCTGGGGGAGGACTTGGTGGTTTAGGCGGTGGTACTGGAGGACTTGGTGGTTTAGGTGGCGGTGCTGGAGGACTTGGTGGGTTAGGTGGCGGTGCGGGAGGCCTTGGTGGTGCTGGTGGAGGTGCTGGTTTGGGTGGACTTGGTGGGGCAGGTTGCGGTGGTGGTCTTCCAGTTATTCCTTAA

Protein sequence

MGKCSIAFVVTLLLVQSALAARNAPVKTTTTTTNVVDTTKKGVVAPTTDKKNFVSFGGIGGAAGAGVGVVGGLPVGGIGAGGLGGAGGLGGLGGAGAGGLGGLGGAGGLGGAGGGLGGLGGAGGGLGGLGGGTGGLGGLGGGAGGLGGLGGGAGGLGGAGGGAGLGGLGGAGCGGGLPVIP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo16514Spo16514gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo16514.1Spo16514.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo16514.1.exon.1Spo16514.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo16514.1.CDS.1Spo16514.1.CDS.1CDS


Homology
[Close]
BLAST of Spo16514.1 vs. NCBI nr
Match: gi|902087552|gb|KNA03256.1| (hypothetical protein SOVF_210940 [Spinacia oleracea])

HSP 1 Score: 241.5 bits (615), Expect = 1.100e-60
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1 

		  

Query: 1   MGKCSIAFVVTLLLVQSALAARNAPVKTTTTTTNVVDTTKKGVVAPTTDKKNFVSFGGIG 60
           MGKCSIAFVVTLLLVQSALAARNAPVKTTTTTTNVVDTTKKGVVAPTTDKKNFVSFGGIG
Sbjct: 1   MGKCSIAFVVTLLLVQSALAARNAPVKTTTTTTNVVDTTKKGVVAPTTDKKNFVSFGGIG 60

Query: 61  GAAGAGVGVVGGLPVGGIGAGGLGGAGGLGGLGGAGAGGLGGLGGAGGLGGAGGGLGGLG 120
           GAAGAGVGVVGGLPVGGIGAGGLGGAGGLGGLGGAGAGGLGGLGGAGGLGGAGGGLGGLG
Sbjct: 61  GAAGAGVGVVGGLPVGGIGAGGLGGAGGLGGLGGAGAGGLGGLGGAGGLGGAGGGLGGLG 120

Query: 121 GAGGGLGGLGGGTGGLGGLGGGAGGLGGLGGGAGGLGGAGGGAGLGGLGGAGCGGGLPVI 180
           GAGGGLGGLGGGTGGLGGLGGGAGGLGGLGGGAGGLGGAGGGAGLGGLGGAGCGGGLPVI
Sbjct: 121 GAGGGLGGLGGGTGGLGGLGGGAGGLGGLGGGAGGLGGAGGGAGLGGLGGAGCGGGLPVI 180

Query: 181 P 182
           P
Sbjct: 181 P 181
[Close]
BLAST of Spo16514.1 vs. NCBI nr
Match: gi|731347438|ref|XP_010684988.1| (PREDICTED: glycine-rich cell wall structural protein 1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 124.8 bits (312), Expect = 1.500e-25
Identity = 139/183 (75.96%), Postives = 143/183 (78.14%), Query Frame = 1 

		  

Query: 1   MGKCSIAFVVTLLLVQSALAARNAPV-KTTTTTTNVVDTTKKGVVAPTTDKKNFVSFGGI 60
           MGK SIAF+ TLLLV SA AAR APV + TT  TNVVDTTKKGV APTTDKKNFVSFGGI
Sbjct: 1   MGKFSIAFLATLLLVHSAFAARTAPVVQNTTKNTNVVDTTKKGV-APTTDKKNFVSFGGI 60

Query: 61  GGAAGAGVGVVGGLPVGGIGAG--GLGGAGGLGGLGGAGAGGLGGLGGAGGLGGAG--GG 120
           GG  G   GVVG  P+GG+G G  GLGGAGGLGGLGG  AGGLGGLGGAGGLGG G  GG
Sbjct: 61  GGGVGGVAGVVG--PIGGLGGGLGGLGGAGGLGGLGG--AGGLGGLGGAGGLGGLGGAGG 120

Query: 121 LGGLGGAGGGLGGLGGGTGGLGGLGGGAGGLGGLGGGAGGLGGAGGGAGLGGLGGAGCGG 179
           LGGLGGAG   GGLGG  GGLGGLGGGAGGLGGL    GGLGGAG GAG G  GG GC G
Sbjct: 121 LGGLGGAGA--GGLGGAGGGLGGLGGGAGGLGGL----GGLGGAGAGAGAG--GGTGCVG 170
[Close]
BLAST of Spo16514.1 vs. NCBI nr
Match: gi|971581407|ref|XP_015159469.1| (PREDICTED: glycine-rich cell wall structural protein-like [Solanum tuberosum])

HSP 1 Score: 63.9 bits (154), Expect = 3.200e-7
Identity = 108/188 (57.45%), Postives = 122/188 (64.89%), Query Frame = 1 

		  

Query: 3   KCSIAFV-VTLLLVQSALAARNAPVKTTTTTTNVVDTTKKGVVAPTTDKKNFVSFGGIGG 62
           K S+ F+ + LL +     AR  P             ++KG+V    D+KNFV FGG+GG
Sbjct: 4   KLSMVFIFLGLLAIVCTTRAREVP-------------SEKGLV----DQKNFVGFGGVGG 63

Query: 63  AAGAGVGVVGGLPVGGIGA-GGLGGAGGLGGLGGAGAGGLGGLGGAGGLGGAGGGLGGLG 122
            +G G GV G   +GG+G  GG+GG GGLGGLGG G GG  GLGG GGLGG  GGLGGLG
Sbjct: 64  FSGVGGGVGGVGGLGGVGGLGGVGGGGGLGGLGGLGGGG--GLGGLGGLGGGDGGLGGLG 123

Query: 123 GAGGG-----LGGLGGGTGGLGGLGGGAGGLGGLGGGAGGLGGAGGG-AGLGGLGG---- 178
           G GGG     LGGLGGG GGLGGLGGG GGLGGLGGG GGLGG GGG  GLGGLGG    
Sbjct: 124 GLGGGGGVGGLGGLGGGVGGLGGLGGGVGGLGGLGGGVGGLGGLGGGVGGLGGLGGGVGG 172
[Close]
BLAST of Spo16514.1 vs. NCBI nr
Match: gi|224065479|ref|XP_002301827.1| (glycine-rich family protein [Populus trichocarpa])

HSP 1 Score: 61.2 bits (147), Expect = 2.100e-6
Identity = 102/192 (53.12%), Postives = 121/192 (63.02%), Query Frame = 1 

		  

Query: 1   MGKCSIAFVVTLLLVQSALAARNAPVKTTTTTTNVVDTTKKGVVAPTTDKKNFVSFGGIG 60
           M +  +  V+ L L     +AR+ P   T    +V  T      A  TD+KNFVS+GG+G
Sbjct: 1   MARSYVCVVLVLALAAVHTSARDVP---TEKNMHVASTKNAPSDAGLTDQKNFVSYGGVG 60

Query: 61  GAAGAGVGVVGGLPVGGIGA-----------GGLGGAGGLGGLGGAGAGGLGGLGGAGGL 120
           G +G G G   GLP GG+G            GGLGG GGLGGLG    GG+GGLG  GG+
Sbjct: 61  GYSGIGAG---GLPFGGVGGIGGVAPLDGGFGGLGGGGGLGGLG----GGIGGLG--GGV 120

Query: 121 GGAGGGLGGLGGAGGGLGGLGGGTGGLGGLGGGAGGLGGLGGGAGGLGGAGGGAGLGGLG 180
           GG GGG+GGLGG  GGLGG+GGG GGLGG+GGG GGLGG+GGG G  GG GGG G GG+G
Sbjct: 121 GGLGGGVGGLGGGVGGLGGVGGGVGGLGGVGGGVGGLGGVGGGVGAGGGVGGGVG-GGVG 178

Query: 181 GAGCGGGLPVIP 182
           G G GGG  V+P
Sbjct: 181 G-GVGGGSGVLP 178
[Close]
BLAST of Spo16514.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q9R6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_210940 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 7.900e-61
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1 

		  

Query: 1   MGKCSIAFVVTLLLVQSALAARNAPVKTTTTTTNVVDTTKKGVVAPTTDKKNFVSFGGIG 60
           MGKCSIAFVVTLLLVQSALAARNAPVKTTTTTTNVVDTTKKGVVAPTTDKKNFVSFGGIG
Sbjct: 1   MGKCSIAFVVTLLLVQSALAARNAPVKTTTTTTNVVDTTKKGVVAPTTDKKNFVSFGGIG 60

Query: 61  GAAGAGVGVVGGLPVGGIGAGGLGGAGGLGGLGGAGAGGLGGLGGAGGLGGAGGGLGGLG 120
           GAAGAGVGVVGGLPVGGIGAGGLGGAGGLGGLGGAGAGGLGGLGGAGGLGGAGGGLGGLG
Sbjct: 61  GAAGAGVGVVGGLPVGGIGAGGLGGAGGLGGLGGAGAGGLGGLGGAGGLGGAGGGLGGLG 120

Query: 121 GAGGGLGGLGGGTGGLGGLGGGAGGLGGLGGGAGGLGGAGGGAGLGGLGGAGCGGGLPVI 180
           GAGGGLGGLGGGTGGLGGLGGGAGGLGGLGGGAGGLGGAGGGAGLGGLGGAGCGGGLPVI
Sbjct: 121 GAGGGLGGLGGGTGGLGGLGGGAGGLGGLGGGAGGLGGAGGGAGLGGLGGAGCGGGLPVI 180

Query: 181 P 182
           P
Sbjct: 181 P 181
[Close]
BLAST of Spo16514.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BWQ8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g167380 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.100e-25
Identity = 139/183 (75.96%), Postives = 143/183 (78.14%), Query Frame = 1 

		  

Query: 1   MGKCSIAFVVTLLLVQSALAARNAPV-KTTTTTTNVVDTTKKGVVAPTTDKKNFVSFGGI 60
           MGK SIAF+ TLLLV SA AAR APV + TT  TNVVDTTKKGV APTTDKKNFVSFGGI
Sbjct: 1   MGKFSIAFLATLLLVHSAFAARTAPVVQNTTKNTNVVDTTKKGV-APTTDKKNFVSFGGI 60

Query: 61  GGAAGAGVGVVGGLPVGGIGAG--GLGGAGGLGGLGGAGAGGLGGLGGAGGLGGAG--GG 120
           GG  G   GVVG  P+GG+G G  GLGGAGGLGGLGG  AGGLGGLGGAGGLGG G  GG
Sbjct: 61  GGGVGGVAGVVG--PIGGLGGGLGGLGGAGGLGGLGG--AGGLGGLGGAGGLGGLGGAGG 120

Query: 121 LGGLGGAGGGLGGLGGGTGGLGGLGGGAGGLGGLGGGAGGLGGAGGGAGLGGLGGAGCGG 179
           LGGLGGAG   GGLGG  GGLGGLGGGAGGLGGL    GGLGGAG GAG G  GG GC G
Sbjct: 121 LGGLGGAGA--GGLGGAGGGLGGLGGGAGGLGGL----GGLGGAGAGAGAG--GGTGCVG 170
[Close]
BLAST of Spo16514.1 vs. UniProtKB/TrEMBL
Match: M1B6B1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014690 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.300e-7
Identity = 108/188 (57.45%), Postives = 122/188 (64.89%), Query Frame = 1 

		  

Query: 3   KCSIAFV-VTLLLVQSALAARNAPVKTTTTTTNVVDTTKKGVVAPTTDKKNFVSFGGIGG 62
           K S+ F+ + LL +     AR  P             ++KG+V    D+KNFV FGG+GG
Sbjct: 4   KLSMVFIFLGLLAIVCTTRAREVP-------------SEKGLV----DQKNFVGFGGVGG 63

Query: 63  AAGAGVGVVGGLPVGGIGA-GGLGGAGGLGGLGGAGAGGLGGLGGAGGLGGAGGGLGGLG 122
            +G G GV G   +GG+G  GG+GG GGLGGLGG G GG  GLGG GGLGG  GGLGGLG
Sbjct: 64  FSGVGGGVGGVGGLGGVGGLGGVGGGGGLGGLGGLGGGG--GLGGLGGLGGGDGGLGGLG 123

Query: 123 GAGGG-----LGGLGGGTGGLGGLGGGAGGLGGLGGGAGGLGGAGGG-AGLGGLGG---- 178
           G GGG     LGGLGGG GGLGGLGGG GGLGGLGGG GGLGG GGG  GLGGLGG    
Sbjct: 124 GLGGGGGVGGLGGLGGGVGGLGGLGGGVGGLGGLGGGVGGLGGLGGGVGGLGGLGGGVGG 172
[Close]
BLAST of Spo16514.1 vs. UniProtKB/TrEMBL
Match: B9GR90_POPTR (Glycine-rich family protein OS=Populus trichocarpa GN=POPTR_0002s25370g PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.500e-6
Identity = 102/192 (53.12%), Postives = 121/192 (63.02%), Query Frame = 1 

		  

Query: 1   MGKCSIAFVVTLLLVQSALAARNAPVKTTTTTTNVVDTTKKGVVAPTTDKKNFVSFGGIG 60
           M +  +  V+ L L     +AR+ P   T    +V  T      A  TD+KNFVS+GG+G
Sbjct: 1   MARSYVCVVLVLALAAVHTSARDVP---TEKNMHVASTKNAPSDAGLTDQKNFVSYGGVG 60

Query: 61  GAAGAGVGVVGGLPVGGIGA-----------GGLGGAGGLGGLGGAGAGGLGGLGGAGGL 120
           G +G G G   GLP GG+G            GGLGG GGLGGLG    GG+GGLG  GG+
Sbjct: 61  GYSGIGAG---GLPFGGVGGIGGVAPLDGGFGGLGGGGGLGGLG----GGIGGLG--GGV 120

Query: 121 GGAGGGLGGLGGAGGGLGGLGGGTGGLGGLGGGAGGLGGLGGGAGGLGGAGGGAGLGGLG 180
           GG GGG+GGLGG  GGLGG+GGG GGLGG+GGG GGLGG+GGG G  GG GGG G GG+G
Sbjct: 121 GGLGGGVGGLGGGVGGLGGVGGGVGGLGGVGGGVGGLGGVGGGVGAGGGVGGGVG-GGVG 178

Query: 181 GAGCGGGLPVIP 182
           G G GGG  V+P
Sbjct: 181 G-GVGGGSGVLP 178
The following BLAST results are available for this feature:
BLAST of Spo16514.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 4
Match NameE-valueIdentityDescription
gi|902087552|gb|KNA03256.1|1.1e-60100.hypothetical protein SOVF_2109... [more]
gi|731347438|ref|XP_010684988.1|1.5e-2575.9PREDICTED: glycine-rich cell w... [more]
gi|971581407|ref|XP_015159469.1|3.2e-757.4PREDICTED: glycine-rich cell w... [more]
gi|224065479|ref|XP_002301827.1|2.1e-653.1glycine-rich family protein [P... [more]
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BLAST of Spo16514.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0K9Q9R6_SPIOL7.9e-61100.Uncharacterized protein OS=Spi... [more]
A0A0J8BWQ8_BETVU1.1e-2575.9Uncharacterized protein OS=Bet... [more]
M1B6B1_SOLTU2.3e-757.4Uncharacterized protein OS=Sol... [more]
B9GR90_POPTR1.5e-653.1Glycine-rich family protein OS... [more]
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BLAST of Spo16514.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo16514.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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