Spo15546 (gene) | SpinachBase

Overview


Name	Spo15546
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Ribosomal protein
Location	chr2 : 30547571 .. 30553509 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATACGTATTTCAAAATATATTTCACCGGTACAACAAATAAGGGTTAGAAGTTTTAATAGAAAGCCTATTTCGAAGCCCATAAAAACCCTTATAAAGCCCATTTGTATTATCAGGACCCATAATCATTAGAAAATAGTCAAAATACTGAGTAGAAACTACTGAAAACTTTCGGAACAAAAAAAAATAATCTAAATATCGAAAAACCCTACTAATTCCCAGCTCAATCTGAAGCTACATTTCAGAAAGCGAGCTTTGATCTTCGTAACCAGGTGATTTTTTCTTCTTCTCATTTTTAAGATTTGCAATTATTTTTATAACTCGATTTGTGAATAATGAATAAGACAATGGGTTCTGAATAATTTGCGATTTTGTTGATAATTAGCGGAACAAGTTTGAAGATGTGAAATGAACTGCTAAAATTGATTAAAGACGCTTCTTTGTTGAACCTTTTTGGGAAATATGCTCAAGAATTAATCTGGGTAAAAGGGATATTAAGAGATTGATTCGAGTACTCTGAAGTAAATACTTTCTGGGTAATTGTTGTTTTTCTGAAGTAATTTTCTGTAATAAGAACTCATTTGAATGTTGTAGGATGAATTTACTTATTGGCTGAACTGCTTTTGGTTCTTATTAATTATGAGCTTATCTTCCAAGGTGCAATTTTGTTGTTTTGTGTATCCCTTGAAGTGGATGGAATGACGGTTCGGAATTGGGCGAATTGAATTGTAACATTTCTTGATGACCGCATTAAATGATTTTGAAGACTTTTCTCAATTCGAAGCGCATGAGTCACTGATATTTGTAGGTGTTGTGTTATAGTTGTTCTAGTAGTAAAGGACATAGGGTATTTTGGGTGAATTTATACTAGCATATCTTCATAACCTTAAGTGTAGTAGCTGCTTGAGTATGTGGTTATTATGGTAAAGTTCCACTTGGAAGGTCTTAGTGTGCAATGAGAATGAGAGTTTGGAATTGGGTGAAATTGTAACATTGCTTGATGATCGATGCAATAATTGATTTCGAATCCCACTTTCAATCAAGGCACTTGTGAATCACTGATATTTATAGGTGTTACAGTTGTTCGTGGGGTGTTTTGGGTGGATTAATAGTAGTATATCTTCATAACCTAACTACCTAAGTGTAGTAGCTGCGCGAGTATGTGGTATTGTGGTCCTTTTAATAAAGCTGCACTCTGTGCAACTGAGTGCCGATTGAATTCTGCTTGAGTATGTTCTATCCTATTGTTTGATGTGCGGAGGTGTTATGCAGTAAGTGAGAGGTCCAAGCGTAGGAAAATGTAGTGAACTTTTGATGTATTTTCGGGATTTCTTATTGGGTTGATATGAAAATATAGAAATACTTGCTAAGATGTTGGCTAATTTCAGTTATTGGAGATATTATGGAGTGGGTGGGGGGAGCTTTGCTTCCATCTCTCCTTTTGGAGGAACACGTGCTTGAATAATTGAGTTGGCTAAAAAGATAATGGGTTTGTGATTTTCATTTATGAAAATTTTTGTATACCACAGGGTTTTTTTTGTAGTCGTATAACACTTTTTTACCATGTTAACTTACTAGAAATATGCCTATATCATTTTGGTCAAAGTCCCATGGACCCATGGTGAGAAATAAAGTAAAAAGGGATTTTATGGGCACCCAGCAACATCGTAGGACTGTGAAATTGGAAGGATTTCATGCATTTTAGTTTTGAGGTTGCCTTTTTGTGACCAAGTCCTAGTTGAGGAAGAAGGTCGCTGATGCTAGAATATCACGTTTGATCTTTTTTAGTCACTTGGGAGTTGGGACTGTGGGAAGCTCCATGTCAACACACAAGGCAGAAGAATGCAACTTTTCTGTACATGTTCAAGCCAACTAAGAGCGGAGGATTTCTTTCCCTGGGTATGGCAGGCAGCACTGCAGCGATGATTTTTTCCACTTTGGTAAGGTGTACAGCCATAGAGTGTACACTAGTGACCAGTTCCTCAATCAATTGGATAACATCACTGCCTGTATTACCTGACTCTTCCTAGTCCTCCGAGGTTATATAATGGCTGGAAGTACTGTTGGGTCATGCATACCACATCCTCCACTCTGAAACTGTCTTGCATTTAAGGATCTTCTATATTGGATAATTTTGTAGGATTTAGACATTCTGCAGAGATTTAGAACTTGTAGTTTTCTGGTGTGGGAAGCAATTGTTTGCAGTTTATGGCTGAAAGAAAAATGGAGGAAAAGAATTGGGTGAAGTCAACCAGTCATTCATATAGTCAGATTTGGGGGTGGTCGTGGGGTTCAGTGACGCGGGAGTTTAAGTTTGGGTTGGGGATGTTGGGGGAAAGGATTTTAATTCAACACTTAATCCCCAGCAGTGTTTGAACCGATGGGTCATTTTTTATTCATGGAGCTTGCATATGAGTCTCAAGCCCGACCCTGGGTATAAGCAAGGGGTGTGACGGCCAAGGGCCCGTGCCCGGAATGGGCCCTGAAAGAATCTGCGTCCAGTTATTTTCTATTAGTACAAAATAATGTATGAAATAAGCATAATAAACTCTATGGCTCAGTGGTAGCTGTGATGTGATTGATTTTAGTAATCACGGGATTGATCATTTTCTGGGCCGGCCCTAGGGTAGGGCATAAGGGGCCGCCGCCCTGGGCCCCAGGGGAAAAAGCCCAACATTTATTAAGCCCGTTAATTCTAAAATATGTATTATTCAATGAAAACTTAGACAACCATGCACTGCAGAGCAGTGGTTGTTTGCGTGATATATCAGGGCGTCCACCAAGGTTCGATAACTACTGAGGTGGTAGTTCGTTTTTATTTTTTTCGTTTTTTTGTTATTTCTCATTTGCTAGCTATGCAATTATAATCTATTACCTAATTTGAATCCAAATAAACACCAAAAGTAGAGCCGTGTACTATCCTTATAATCATATATTTTCTTCTTCTTTTGTTAATATAATCACACTCCTTGTTTTTATTTGGAGTTTAGCAAAAATAATTGGATTGTAGTTTATTGTACTTCAAAAATTATTACCGACTTGCTAAAATTTCAAGTTCCATTTCCCTTCAGTAATTCATCGTTGTCTTATGCTTGATGATTAATGTTTAAAATATTAGAATATAATTCATGTTTAATGGCACAAGGTTGAAAGTATTCAAGCCTTCATATTTTGTAATAGAGTCAATTTCTCATGGCTAATTTAATTAGATATAGAGTAGTATTGAGTCTTAAGAAATGAAACGTCAATTATTTACATACATTTTTCAATAAAAAAAAGTACATTACATCGATTCACAATTTTTTTTGTCTATGTGCCTTTTTAAAAGTAAGGGCCTCGATTTTTGTTTTTCCCATAGGCCACCAAAAAGTCAGGACCGGCCCTGATCATTTTGGTAAAGCTGCACTTGGAACTTTGGAAGGTCTTAGTGAGCAACTGAGTGTTGATTACATAATATTTGAGTATGTTTATCCTATTGTTTGATGTGCGGAGGAGTAATGCTGTAATTAAGAGGTCCAAACATTTGAAGTTTTAGTGTCTCGTGAACTTTTGAGTTATGCTGGGGATTTCTTATTGGGTTGGAGTGGGGGTGGGGGGGTAATGTACTAATGGTAGTATCTATTTTTGGGGGGTTACTAACTTACTATGGTTAAGCTTTGCTTCCATCTCTCCTTTTGGAGGAATATGTGCTTGTAAGTTGTAATGATTGAGTGGCTGGAACTACACAGGATTTATGACTTCAGTTATGAAAGGTTTTGTAACCACAGGGTTTTGTTGCAGTCGTTTAAACTTGTTTCCCGTGTTAACTTGCTAGAAATATGTGTATATCTGAATGAGTTTGAGTTGTAGTTTTTGGTTAAAGTCCCATGGTGAGAGATAAAGCAAAAAATGGATTTTATGTGCACCCAGCAGCATTGTATGATTGTGAAATGGAAGGATTTTATGCATTTTAGTTTTAAGATTGCTTTTTGTGACCAAGTCCTAATTAAGGAAGAAGGTCGCTGATGCTAGACCAACGTGATTGATCTTTTTTTCATCACTTGTAACCGTGGGGTAGATGAATGCAACTTTTATGTACATGTTCAAGCCAACTAAGAGCAGAGGATTTCTTTCCCTGGGTATGACAGGCAGCACTGCAACACTGATTTATTTCACTTTGATAAGGCGTAGCCTCGTAGAGCCGTAAAGCGTACACTAGTGTCCAGTTCGTCAATCAATCTGATAATATCATTGCCTGTATTACCTGACATCTCTTCTCTATCCTCTGAGGTTATCTAATGGTTGGAAGTGCTGTTTGGTCAATGCATACCACATTCTCTACTCTGAAAAACTGTCGTACATTTACTTTACTAAAGAGTTGTTATCATTCTGTTTTGGGAGTTAATCGTGTCTAACATCTAAGGATCTTCTGTATCATAGAGTCTTGTAGGATTTAGACATTTCACAGAGATTTAAAAAGCTGTAGTTTTTTGGTGTGGGAAGCAGTTTGCAGTTTATGGCAGAAAGACAAGAGGAAGAAAAGTATGGGATGAAGTCACTCATGTAGTCAGGTTTGAGGGTGGTCACGGGATTCAGGGAGGTGGGGGTTGGAGTTTGAGTTGGGGATGTTGGGGGAAAGGATTTATTCACCACTCCTCTCCAACAGTGATTGAGCCCATGGATCATCTTTTATCCATGGAGCTTGCAGATAAGTTTGTCGTAGTAGCAGTGAAATCTTCAGTTCAATACAAATTTGCTTGATAGGATGATGTTCTAGTACCTTCACCAATTGCATCGTTGCTTGTCAAGTGCAACGCCACATCGATTACATAATATAACCGGATACATCATGGACTATGGCGACGATTGATTTGTGCTAAATGTTATTATGCTGATGCTATTCCATTCTTTACTGTGCAATATCTTCTTAATTTGACATTCAAACATCTTCCATGTGTAAGGTTCATTTTAGATGTTTCTTAATGGACCTAGAAACAAGTAAAACAACACCAACATGTGGTAGTCCTGCCGTCTTGGGTGGGTAAATGGTGGATCTGAATGCTTCAACCTAATGATCCCCGTTCAGGACCCCTAGGTTCTTACATTTGTAAAGACGGGATGGGGGAGGGGGATGGCAAAAAGTCTTGTGTAGATCAGTGTGTATTAAGGTGCCTCCCCGGCCCCCAGCAGAGAGGGGATTTTGATATTAATTTATTTCATTGATTTGAAAAAATGCCCTTACAAAAGTTACACATGCAGTAACCATGAAGGTCCGGTCATCAGTGAGGAAGATGTGTGAGTTTTGCAAGGTGGTTAAACGCCGTGGCCGTGTGTACGTAGTTTGCAGTGCAAAACCCAAGCACAAGCAGCGGCAAGGCTTCACAACGTTTGCACATGAAGGGCCCCTTATTAACACGTATGTTCAGTCTATATCTTTTGTTTCGCTGATGAGATGTGCATAAATAAGAATTGAAAAGGTTGATCAGTATTTTGGACTTTCTATCTTAGGCTAACTAATCATTTATCTGCTCATTTCTTCTTAATAAACAAAATGGAGTAAGTTGGAAGTTGGTCCCTCCATGTAGGTGTGTTTGTCATAGTTTCCTTTTTGGTTTGTCCAACAAAGACTAATCATAATTAGTGAATATTACGCAGTTCATACGTAGTTGGACGTGTGTATCACTTGATAATTAATAATTGCAATTACTGATTAGTGAGATTATCTCTTTTGGCATGTAAGTTCAGGTAGCTGCTTTTCTCATTTCGAAATGCCACAATGATGCTAATAACTTGTTCCTTGGAACATTCAGGTCTGGAGACATAAGTTCAAAGCCATTGATCTCGAGCACCCCAAGCTTGCGCATCGGTCTGGCATCTACAGTTCCTAAAGTACAGCATCCTGCTGTGATGTTTGGTTGGAGAGATGCCATTGCTTCCCTTCTGTTTAAGAAAGGCGATTAA

mRNA sequence

CAATACGTATTTCAAAATATATTTCACCGGTACAACAAATAAGGGTTAGAAGTTTTAATAGAAAGCCTATTTCGAAGCCCATAAAAACCCTTATAAAGCCCATTTGTATTATCAGGACCCATAATCATTAGAAAATAGTCAAAATACTGAGTAGAAACTACTGAAAACTTTCGGAACAAAAAAAAATAATCTAAATATCGAAAAACCCTACTAATTCCCAGCTCAATCTGAAGCTACATTTCAGAAAGCGAGCTTTGATCTTCGTAACCAGTAACCATGAAGGTCCGGTCATCAGTGAGGAAGATGTGTGAGTTTTGCAAGGTGGTTAAACGCCGTGGCCGTGTGTACGTAGTTTGCAGTGCAAAACCCAAGCACAAGCAGCGGCAAGGCTTCACAACGTTTGCACATGAAGGGCCCCTTATTAACACGTCTGGAGACATAAGTTCAAAGCCATTGATCTCGAGCACCCCAAGCTTGCGCATCGGTCTGGCATCTACAGTTCCTAAAGTACAGCATCCTGCTGTGATGTTTGGTTGGAGAGATGCCATTGCTTCCCTTCTGTTTAAGAAAGGCGATTAA

Coding sequence (CDS)

ATGAAGGTCCGGTCATCAGTGAGGAAGATGTGTGAGTTTTGCAAGGTGGTTAAACGCCGTGGCCGTGTGTACGTAGTTTGCAGTGCAAAACCCAAGCACAAGCAGCGGCAAGGCTTCACAACGTTTGCACATGAAGGGCCCCTTATTAACACGTCTGGAGACATAAGTTCAAAGCCATTGATCTCGAGCACCCCAAGCTTGCGCATCGGTCTGGCATCTACAGTTCCTAAAGTACAGCATCCTGCTGTGATGTTTGGTTGGAGAGATGCCATTGCTTCCCTTCTGTTTAAGAAAGGCGATTAA

Protein sequence

MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPLISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo15546.1	Spo15546.1	mRNA

Homology

[Close]

BLAST of Spo15546.1 vs. NCBI nr
Match: gi|902175440|gb|KNA08596.1| (hypothetical protein SOVF_161230 [Spinacia oleracea])

HSP 1 Score: 203.4 bits (516), Expect = 1.900e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1

		  
Query: 1   MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
           MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL
Sbjct: 1   MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60

Query: 61  ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD 101
           ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD
Sbjct: 61  ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD 100

[Close]

BLAST of Spo15546.1 vs. NCBI nr
Match: gi|870850792|gb|KMT02858.1| (hypothetical protein BVRB_8g194360 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 172.2 bits (435), Expect = 4.700e-40
Identity = 83/100 (83.00%), Postives = 91/100 (91.00%), Query Frame = 1

		  
Query: 1   MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
           MKVRSSVRKMCEFCKVVKRRG VYV+CSAKPKHKQRQGF++FAHEGPLINTS DISSKPL
Sbjct: 232 MKVRSSVRKMCEFCKVVKRRGCVYVLCSAKPKHKQRQGFSSFAHEGPLINTSADISSKPL 291

Query: 61  ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD 101
           IS++PSLRIGL S VPK+  P  +FGWRDAIASLLFKK +
Sbjct: 292 ISNSPSLRIGLTSIVPKLHQPTAVFGWRDAIASLLFKKSN 331

[Close]

BLAST of Spo15546.1 vs. NCBI nr
Match: gi|225445521|ref|XP_002285234.1| (PREDICTED: uncharacterized protein LOC100250810 [Vitis vinifera])

HSP 1 Score: 130.2 bits (326), Expect = 2.000e-27
Identity = 61/98 (62.24%), Postives = 79/98 (80.61%), Query Frame = 1

		  
Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
          MKVRSSV+KMCE+C+ VKRRGRVYV+C+A PKHKQRQG +TFAHEGPL   S ++++K  
Sbjct: 1  MKVRSSVKKMCEYCRTVKRRGRVYVLCTANPKHKQRQGMSTFAHEGPLPPMSSEMNAKQE 60

Query: 61 ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKK 99
          IS    L+ GLAS +PK   P++M+GWR ++ASLLFK+
Sbjct: 61 ISRNHRLQGGLASIIPKKPEPSMMYGWRASLASLLFKQ 98

[Close]

BLAST of Spo15546.1 vs. NCBI nr
Match: gi|147794982|emb|CAN71764.1| (hypothetical protein VITISV_039227 [Vitis vinifera])

HSP 1 Score: 130.2 bits (326), Expect = 2.000e-27
Identity = 61/98 (62.24%), Postives = 79/98 (80.61%), Query Frame = 1

		  
Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
          MKVRSSV+KMCE+C+ VKRRGRVYV+C+A PKHKQRQG +TFAHEGPL   S ++++K  
Sbjct: 1  MKVRSSVKKMCEYCRTVKRRGRVYVLCTANPKHKQRQGMSTFAHEGPLPPMSSEMNAKQE 60

Query: 61 ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKK 99
          IS    L+ GLAS +PK   P++M+GWR ++ASLLFK+
Sbjct: 61 ISXNHRLQGGLASIIPKKPEPSMMYGWRASLASLLFKQ 98

[Close]

BLAST of Spo15546.1 vs. NCBI nr
Match: gi|703076085|ref|XP_010090249.1| (50S ribosomal protein L36 [Morus notabilis])

HSP 1 Score: 124.4 bits (311), Expect = 1.100e-25
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = 1

		  
Query: 1   MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
           MKVRSSV+KMCEFC+ VKRRGRVYV+C+A PKHKQRQG +T A+EGPL + S    SKP 
Sbjct: 1   MKVRSSVKKMCEFCRTVKRRGRVYVLCTANPKHKQRQGVSTLAYEGPLPSQSSGTVSKPE 60

Query: 61  ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD 101
           ++    + +GLAS +PK   P++  GWR  +ASLLFK+ +
Sbjct: 61  VNVNQGVPVGLASLIPKKTEPSMTLGWRMGLASLLFKRSN 100

[Close]

BLAST of Spo15546.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QPZ2_SPIOL (Ribosomal protein OS=Spinacia oleracea GN=SOVF_161230 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.300e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1

		  
Query: 1   MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
           MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL
Sbjct: 1   MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60

Query: 61  ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD 101
           ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD
Sbjct: 61  ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD 100

[Close]

BLAST of Spo15546.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BSI0_BETVU (Ribosomal protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g194360 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.300e-40
Identity = 83/100 (83.00%), Postives = 91/100 (91.00%), Query Frame = 1

		  
Query: 1   MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
           MKVRSSVRKMCEFCKVVKRRG VYV+CSAKPKHKQRQGF++FAHEGPLINTS DISSKPL
Sbjct: 232 MKVRSSVRKMCEFCKVVKRRGCVYVLCSAKPKHKQRQGFSSFAHEGPLINTSADISSKPL 291

Query: 61  ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD 101
           IS++PSLRIGL S VPK+  P  +FGWRDAIASLLFKK +
Sbjct: 292 ISNSPSLRIGLTSIVPKLHQPTAVFGWRDAIASLLFKKSN 331

[Close]

BLAST of Spo15546.1 vs. UniProtKB/TrEMBL
Match: A5AX15_VITVI (Ribosomal protein OS=Vitis vinifera GN=VITISV_039227 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.400e-27
Identity = 61/98 (62.24%), Postives = 79/98 (80.61%), Query Frame = 1

		  
Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
          MKVRSSV+KMCE+C+ VKRRGRVYV+C+A PKHKQRQG +TFAHEGPL   S ++++K  
Sbjct: 1  MKVRSSVKKMCEYCRTVKRRGRVYVLCTANPKHKQRQGMSTFAHEGPLPPMSSEMNAKQE 60

Query: 61 ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKK 99
          IS    L+ GLAS +PK   P++M+GWR ++ASLLFK+
Sbjct: 61 ISXNHRLQGGLASIIPKKPEPSMMYGWRASLASLLFKQ 98

[Close]

BLAST of Spo15546.1 vs. UniProtKB/TrEMBL
Match: D7TC22_VITVI (Ribosomal protein OS=Vitis vinifera GN=VIT_11s0016g05390 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.400e-27
Identity = 61/98 (62.24%), Postives = 79/98 (80.61%), Query Frame = 1

		  
Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
          MKVRSSV+KMCE+C+ VKRRGRVYV+C+A PKHKQRQG +TFAHEGPL   S ++++K  
Sbjct: 1  MKVRSSVKKMCEYCRTVKRRGRVYVLCTANPKHKQRQGMSTFAHEGPLPPMSSEMNAKQE 60

Query: 61 ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKK 99
          IS    L+ GLAS +PK   P++M+GWR ++ASLLFK+
Sbjct: 61 ISRNHRLQGGLASIIPKKPEPSMMYGWRASLASLLFKQ 98

[Close]

BLAST of Spo15546.1 vs. UniProtKB/TrEMBL
Match: W9QKG1_9ROSA (Ribosomal protein OS=Morus notabilis GN=L484_003789 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.800e-26
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = 1

		  
Query: 1   MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
           MKVRSSV+KMCEFC+ VKRRGRVYV+C+A PKHKQRQG +T A+EGPL + S    SKP 
Sbjct: 1   MKVRSSVKKMCEFCRTVKRRGRVYVLCTANPKHKQRQGVSTLAYEGPLPSQSSGTVSKPE 60

Query: 61  ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD 101
           ++    + +GLAS +PK   P++  GWR  +ASLLFK+ +
Sbjct: 61  VNVNQGVPVGLASLIPKKTEPSMTLGWRMGLASLLFKRSN 100

[Close]

BLAST of Spo15546.1 vs. ExPASy Swiss-Prot
Match: RL36_LACRD (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.700e-10
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1

		  
Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQG 39
          MKVR SV+KMCE CK+VKR GRV V+CSA PKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

[Close]

BLAST of Spo15546.1 vs. ExPASy Swiss-Prot
Match: RL36_LACRJ (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain JCM 1112) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.700e-10
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1

		  
Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQG 39
          MKVR SV+KMCE CK+VKR GRV V+CSA PKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

[Close]

BLAST of Spo15546.1 vs. ExPASy Swiss-Prot
Match: RL36_LACC3 (50S ribosomal protein L36 OS=Lactobacillus casei (strain ATCC 334) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.300e-10
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1

		  
Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQG 39
          MKVR SV+KMCE CKVV+R+GRV ++CSA PKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

[Close]

BLAST of Spo15546.1 vs. ExPASy Swiss-Prot
Match: RL36_LACCB (50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.300e-10
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1

		  
Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQG 39
          MKVR SV+KMCE CKVV+R+GRV ++CSA PKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

[Close]

BLAST of Spo15546.1 vs. ExPASy Swiss-Prot
Match: RL36_LACBA (50S ribosomal protein L36 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.000e-10
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1

		  
Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQG 39
          MKVR SV+ MCE CKV+KR+GRV V+CSA PKHKQRQG
Sbjct: 1  MKVRPSVKPMCEHCKVIKRKGRVMVICSANPKHKQRQG 38

[Close]

BLAST of Spo15546.1 vs. TAIR (Arabidopsis)
Match: AT5G20180.1 (Ribosomal protein L36)

HSP 1 Score: 111.3 bits (277), Expect = 3.500e-25
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 1

		  
Query: 1   MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEG--PLINTSGDISSK 60
           MKVRSSV+KMCEFCK VKRRGRVYV+CS+ PKHKQRQGF++FA+EG  P    +  I+S+
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query: 61  PLIS-STPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD 101
            L+      +  GLAS + K   P   FGWR  +AS+LFK+G+
Sbjct: 61  ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQGN 103

[Close]

BLAST of Spo15546.1 vs. TAIR (Arabidopsis)
Match: ATCG00760.1 (ribosomal protein L36)

HSP 1 Score: 56.2 bits (134), Expect = 1.300e-8
Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 1

		  
Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQG 39
          MK+R+SVRK+CE C++++RRGR+ V+CS  P+HKQRQG
Sbjct: 1  MKIRASVRKICEKCRLIRRRGRIIVICS-NPRHKQRQG 37

The following BLAST results are available for this feature:

BLAST of Spo15546.1 vs. NCBI nr
BLAST of Spo15546.1 vs. UniProtKB/TrEMBL
BLAST of Spo15546.1 vs. ExPASy Swiss-Prot
BLAST of Spo15546.1 vs. TAIR (Arabidopsis)

BLAST of Spo15546.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902175440\|gb\|KNA08596.1\|	1.9e-49	100.	hypothetical protein SOVF_1612...	[more]
gi\|870850792\|gb\|KMT02858.1\|	4.7e-40	83.0	hypothetical protein BVRB_8g19...	[more]
gi\|225445521\|ref\|XP_002285234.1\|	2.0e-27	62.2	PREDICTED: uncharacterized pro...	[more]
gi\|147794982\|emb\|CAN71764.1\|	2.0e-27	62.2	hypothetical protein VITISV_03...	[more]
gi\|703076085\|ref\|XP_010090249.1\|	1.1e-25	58.0	50S ribosomal protein L36 [Mor...	[more]

BLAST of Spo15546.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9QPZ2_SPIOL	1.3e-49	100.	Ribosomal protein OS=Spinacia ...	[more]
A0A0J8BSI0_BETVU	3.3e-40	83.0	Ribosomal protein OS=Beta vulg...	[more]
A5AX15_VITVI	1.4e-27	62.2	Ribosomal protein OS=Vitis vin...	[more]
D7TC22_VITVI	1.4e-27	62.2	Ribosomal protein OS=Vitis vin...	[more]
W9QKG1_9ROSA	7.8e-26	58.0	Ribosomal protein OS=Morus not...	[more]

BLAST of Spo15546.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
RL36_LACRD	1.7e-10	78.9	50S ribosomal protein L36 OS=L...	[more]
RL36_LACRJ	1.7e-10	78.9	50S ribosomal protein L36 OS=L...	[more]
RL36_LACC3	2.3e-10	76.3	50S ribosomal protein L36 OS=L...	[more]
RL36_LACCB	2.3e-10	76.3	50S ribosomal protein L36 OS=L...	[more]
RL36_LACBA	5.0e-10	76.3	50S ribosomal protein L36 OS=L...	[more]

BLAST of Spo15546.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
AT5G20180.1	3.5e-25	56.3	Ribosomal protein L36	[more]
ATCG00760.1	1.3e-8	63.1	ribosomal protein L36	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000473	Ribosomal protein L36	HAMAP	MF_00251	Ribosomal_L36	coord: 1..38 score: 1
IPR000473	Ribosomal protein L36	PANTHER	PTHR18804	FAMILY NOT NAMED	coord: 1..65 score: 9.2
IPR000473	Ribosomal protein L36	PFAM	PF00444	Ribosomal_L36	coord: 1..38 score: 7.1
IPR000473	Ribosomal protein L36	TIGRFAMs	TIGR01022	TIGR01022	coord: 1..38 score: 3.4
IPR000473	Ribosomal protein L36	PROSITE	PS00828	RIBOSOMAL_L36	coord: 11..37 scor
IPR000473	Ribosomal protein L36	unknown	SSF57840	Ribosomal protein L36	coord: 1..38 score: 2.49
None	No IPR available	PANTHER	PTHR18804:SF7	RIBOSOMAL PROTEIN	coord: 1..65 score: 9.2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0009651	response to salt stress
biological_process	GO:0006457	protein folding
biological_process	GO:0010498	proteasomal protein catabolic process
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0009409	response to cold
biological_process	GO:0016070	RNA metabolic process
biological_process	GO:0007010	cytoskeleton organization
cellular_component	GO:0005829	cytosol
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0005622	intracellular
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003746	translation elongation factor activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo05909	0.72	Barchart \| Table
Spo02397	0.70	Barchart \| Table
Spo23220	0.69	Barchart \| Table
Spo07668	0.69	Barchart \| Table
Spo06318	0.68	Barchart \| Table
Spo05064	0.68	Barchart \| Table
Spo19236	0.68	Barchart \| Table
Spo16894	0.67	Barchart \| Table
Spo19440	0.67	Barchart \| Table
Spo23241	0.67	Barchart \| Table
Spo10147	0.66	Barchart \| Table
Spo19413	0.66	Barchart \| Table
Spo19873	0.66	Barchart \| Table
Spo06840	0.66	Barchart \| Table
Spo12311	0.66	Barchart \| Table
Spo23622	0.65	Barchart \| Table
Spo13288	0.65	Barchart \| Table
Spo22891	0.65	Barchart \| Table