Spo08586 (gene) | SpinachBase

Overview


Name	Spo08586
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein isoform 1
Location	chr2 : 31361095 .. 31361445 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGTACCGGAGTAGGAGACGGAGGACTACTATTCCGCGGATTCTTCGAAGGATCCATTTCTGGTTCTCATTTCGAGATCGACAAACGACCTTACCATAAGAACTGCACCTGCGCCCTCCACGGTTCATCAGGAACTGCCAACTGTCCCCATCAAAAGCCCCCTAAAGTCTCCTACCCGATCAAACGATCCTGGAGCGAAGGATCCTTGGCTATGTATTCGTCACTGAATCCATCCCCTTCTTCATCCCCTGCTTCCGTTGATCATATTTCTAAGGGTAATGGTACTCCTCCCCTTCCTCGCACTTCTTCCTCATCAACATTGCATACTTGTCCAATCAGATCTTAA

mRNA sequence

ATGGCGAGTACCGGAGTAGGAGACGGAGGACTACTATTCCGCGGATTCTTCGAAGGATCCATTTCTGGTTCTCATTTCGAGATCGACAAACGACCTTACCATAAGAACTGCACCTGCGCCCTCCACGGTTCATCAGGAACTGCCAACTGTCCCCATCAAAAGCCCCCTAAAGTCTCCTACCCGATCAAACGATCCTGGAGCGAAGGATCCTTGGCTATGTATTCGTCACTGAATCCATCCCCTTCTTCATCCCCTGCTTCCGTTGATCATATTTCTAAGGGTAATGGTACTCCTCCCCTTCCTCGCACTTCTTCCTCATCAACATTGCATACTTGTCCAATCAGATCTTAA

Coding sequence (CDS)

ATGGCGAGTACCGGAGTAGGAGACGGAGGACTACTATTCCGCGGATTCTTCGAAGGATCCATTTCTGGTTCTCATTTCGAGATCGACAAACGACCTTACCATAAGAACTGCACCTGCGCCCTCCACGGTTCATCAGGAACTGCCAACTGTCCCCATCAAAAGCCCCCTAAAGTCTCCTACCCGATCAAACGATCCTGGAGCGAAGGATCCTTGGCTATGTATTCGTCACTGAATCCATCCCCTTCTTCATCCCCTGCTTCCGTTGATCATATTTCTAAGGGTAATGGTACTCCTCCCCTTCCTCGCACTTCTTCCTCATCAACATTGCATACTTGTCCAATCAGATCTTAA

Protein sequence

MASTGVGDGGLLFRGFFEGSISGSHFEIDKRPYHKNCTCALHGSSGTANCPHQKPPKVSYPIKRSWSEGSLAMYSSLNPSPSSSPASVDHISKGNGTPPLPRTSSSSTLHTCPIRS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo08586.1	Spo08586.1	mRNA

Homology

[Close]

BLAST of Spo08586.1 vs. NCBI nr
Match: gi|902212255|gb|KNA16921.1| (hypothetical protein SOVF_084810 [Spinacia oleracea])

HSP 1 Score: 240.7 bits (613), Expect = 1.200e-60
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1

		  
Query: 1   MASTGVGDGGLLFRGFFEGSISGSHFEIDKRPYHKNCTCALHGSSGTANCPHQKPPKVSY 60
           MASTGVGDGGLLFRGFFEGSISGSHFEIDKRPYHKNCTCALHGSSGTANCPHQKPPKVSY
Sbjct: 1   MASTGVGDGGLLFRGFFEGSISGSHFEIDKRPYHKNCTCALHGSSGTANCPHQKPPKVSY 60

Query: 61  PIKRSWSEGSLAMYSSLNPSPSSSPASVDHISKGNGTPPLPRTSSSSTLHTCPIRS 117
           PIKRSWSEGSLAMYSSLNPSPSSSPASVDHISKGNGTPPLPRTSSSSTLHTCPIRS
Sbjct: 61  PIKRSWSEGSLAMYSSLNPSPSSSPASVDHISKGNGTPPLPRTSSSSTLHTCPIRS 116

[Close]

BLAST of Spo08586.1 vs. NCBI nr
Match: gi|731352871|ref|XP_010687766.1| (PREDICTED: uncharacterized protein LOC104901838 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 139.0 bits (349), Expect = 5.100e-30
Identity = 79/111 (71.17%), Postives = 85/111 (76.58%), Query Frame = 1

		  
Query: 1   MASTGVGDGGLLFRGFFEGSISGSHFEIDKRPYHKNCTCALHGSSGTANCPHQKPPKVSY 60
           MA TGVGDG  LF G FEGSISGSH EID+RPYH+NCTCALH SS  A C H KP KV Y
Sbjct: 1   MAGTGVGDG--LFHGVFEGSISGSHLEIDRRPYHRNCTCALHDSSRGATCSHHKPSKVIY 60

Query: 61  PIKRSWSEGSLAMYS---SLNPSPSSSPASVDHISKGNGTPPLPRTSSSST 109
           PIKRSWSEGSLA YS   +LNPSPSSSPA +D +SK     P+ RTSSSST
Sbjct: 61  PIKRSWSEGSLAFYSASATLNPSPSSSPA-ID-LSKAT---PISRTSSSST 104

[Close]

BLAST of Spo08586.1 vs. NCBI nr
Match: gi|604329723|gb|EYU34913.1| (hypothetical protein MIMGU_mgv1a017777mg, partial [Erythranthe guttata])

HSP 1 Score: 95.9 bits (237), Expect = 4.900e-17
Identity = 52/88 (59.09%), Postives = 61/88 (69.32%), Query Frame = 1

		  
Query: 1  MASTGVGDGGLLFRGFFEGSISGSHFEIDKRPYHKNCTCALHGSSGTANCPHQKPPK-VS 60
          MA+   GDG  L  G FEG ISG    I +RPYHKNCTCALH S   A+C H    K +S
Sbjct: 1  MATGAAGDG--LIWGMFEGCISGGDMGIQRRPYHKNCTCALHNSG--AHCSHTSRHKNIS 60

Query: 61 YPIKRSWSEGSLAMYSSLNPSPSSSPAS 88
          YPI+RSWSEGSLA+  + +PSPSSSPA+
Sbjct: 61 YPIRRSWSEGSLALIGNSSPSPSSSPAT 84

[Close]

BLAST of Spo08586.1 vs. NCBI nr
Match: gi|848879773|ref|XP_012840277.1| (PREDICTED: uncharacterized protein LOC105960631 [Erythranthe guttata])

HSP 1 Score: 95.9 bits (237), Expect = 4.900e-17
Identity = 52/88 (59.09%), Postives = 61/88 (69.32%), Query Frame = 1

		  
Query: 1  MASTGVGDGGLLFRGFFEGSISGSHFEIDKRPYHKNCTCALHGSSGTANCPHQKPPK-VS 60
          MA+   GDG  L  G FEG ISG    I +RPYHKNCTCALH S   A+C H    K +S
Sbjct: 1  MATGAAGDG--LIWGMFEGCISGGDMGIQRRPYHKNCTCALHNSG--AHCSHTSRHKNIS 60

Query: 61 YPIKRSWSEGSLAMYSSLNPSPSSSPAS 88
          YPI+RSWSEGSLA+  + +PSPSSSPA+
Sbjct: 61 YPIRRSWSEGSLALIGNSSPSPSSSPAT 84

[Close]

BLAST of Spo08586.1 vs. NCBI nr
Match: gi|645275596|ref|XP_008242894.1| (PREDICTED: uncharacterized protein LOC103341194 [Prunus mume])

HSP 1 Score: 92.0 bits (227), Expect = 7.100e-16
Identity = 50/95 (52.63%), Postives = 63/95 (66.32%), Query Frame = 1

		  
Query: 1  MASTGVGDGGLLFRGFFEGSISGSHFEIDKRPYHKNCTCALHGSSGTANCPHQKP--PKV 60
          MASTG    GL FR  +EG I+GS   +++RPYH+NC CALH  S    C H  P   KV
Sbjct: 1  MASTGAAADGL-FRCVYEGCIAGSDVGVERRPYHRNCGCALHNKSRNKQCTHGGPKCKKV 60

Query: 61 SYPIKRSWSEGSLAMY--SSLNPSPSSSPASVDHI 92
          SYP++R+WSEGSLA+   +S + SPSSSPA   H+
Sbjct: 61 SYPMRRAWSEGSLALVAAASAHSSPSSSPAQHHHV 94

[Close]

BLAST of Spo08586.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBN7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_084810 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 8.700e-61
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1

		  
Query: 1   MASTGVGDGGLLFRGFFEGSISGSHFEIDKRPYHKNCTCALHGSSGTANCPHQKPPKVSY 60
           MASTGVGDGGLLFRGFFEGSISGSHFEIDKRPYHKNCTCALHGSSGTANCPHQKPPKVSY
Sbjct: 1   MASTGVGDGGLLFRGFFEGSISGSHFEIDKRPYHKNCTCALHGSSGTANCPHQKPPKVSY 60

Query: 61  PIKRSWSEGSLAMYSSLNPSPSSSPASVDHISKGNGTPPLPRTSSSSTLHTCPIRS 117
           PIKRSWSEGSLAMYSSLNPSPSSSPASVDHISKGNGTPPLPRTSSSSTLHTCPIRS
Sbjct: 61  PIKRSWSEGSLAMYSSLNPSPSSSPASVDHISKGNGTPPLPRTSSSSTLHTCPIRS 116

[Close]

BLAST of Spo08586.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BUE6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g192770 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.500e-30
Identity = 79/111 (71.17%), Postives = 85/111 (76.58%), Query Frame = 1

		  
Query: 1   MASTGVGDGGLLFRGFFEGSISGSHFEIDKRPYHKNCTCALHGSSGTANCPHQKPPKVSY 60
           MA TGVGDG  LF G FEGSISGSH EID+RPYH+NCTCALH SS  A C H KP KV Y
Sbjct: 1   MAGTGVGDG--LFHGVFEGSISGSHLEIDRRPYHRNCTCALHDSSRGATCSHHKPSKVIY 60

Query: 61  PIKRSWSEGSLAMYS---SLNPSPSSSPASVDHISKGNGTPPLPRTSSSST 109
           PIKRSWSEGSLA YS   +LNPSPSSSPA +D +SK     P+ RTSSSST
Sbjct: 61  PIKRSWSEGSLAFYSASATLNPSPSSSPA-ID-LSKAT---PISRTSSSST 104

[Close]

BLAST of Spo08586.1 vs. UniProtKB/TrEMBL
Match: A0A022R5K9_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a017777mg PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.400e-17
Identity = 52/88 (59.09%), Postives = 61/88 (69.32%), Query Frame = 1

		  
Query: 1  MASTGVGDGGLLFRGFFEGSISGSHFEIDKRPYHKNCTCALHGSSGTANCPHQKPPK-VS 60
          MA+   GDG  L  G FEG ISG    I +RPYHKNCTCALH S   A+C H    K +S
Sbjct: 1  MATGAAGDG--LIWGMFEGCISGGDMGIQRRPYHKNCTCALHNSG--AHCSHTSRHKNIS 60

Query: 61 YPIKRSWSEGSLAMYSSLNPSPSSSPAS 88
          YPI+RSWSEGSLA+  + +PSPSSSPA+
Sbjct: 61 YPIRRSWSEGSLALIGNSSPSPSSSPAT 84

[Close]

BLAST of Spo08586.1 vs. UniProtKB/TrEMBL
Match: M5VRL2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013271mg PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.000e-16
Identity = 50/95 (52.63%), Postives = 63/95 (66.32%), Query Frame = 1

		  
Query: 1  MASTGVGDGGLLFRGFFEGSISGSHFEIDKRPYHKNCTCALHGSSGTANCPHQKP--PKV 60
          MA+TG    GL FR  +EG I+GS   +++RPYH+NC CALH  S    C H  P   KV
Sbjct: 1  MAATGAAADGL-FRCVYEGCIAGSDVGVERRPYHRNCGCALHNKSRNKQCTHGGPKCKKV 60

Query: 61 SYPIKRSWSEGSLAMY--SSLNPSPSSSPASVDHI 92
          SYP++R+WSEGSLA+   SS + SPSSSPA   H+
Sbjct: 61 SYPMRRAWSEGSLALVAASSAHSSPSSSPAQNHHV 94

[Close]

BLAST of Spo08586.1 vs. UniProtKB/TrEMBL
Match: A0A061GQ94_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038276 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.200e-15
Identity = 49/87 (56.32%), Postives = 60/87 (68.97%), Query Frame = 1

		  
Query: 3  STGVGDGGLLFRGFFEGSISGSHFEIDKRPYHKNCTCALHGSSGTANCPHQKP--PKVSY 62
          +TG  DG  LFR  +EG I+G    I++RPYH+NC+CALH  S   NCPH  P    VSY
Sbjct: 2  ATGAADG--LFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKS-RGNCPHAFPKCKNVSY 61

Query: 63 PIKRSWSEGSLAM-YSSLNPSPSSSPA 87
          PI+R+WSEG LAM  +S + SPSSSPA
Sbjct: 62 PIRRAWSEGCLAMAAASCHSSPSSSPA 85

[Close]

BLAST of Spo08586.1 vs. TAIR (Arabidopsis)
Match: AT2G46490.1 (unknown protein)

HSP 1 Score: 70.5 bits (171), Expect = 7.800e-13
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 1

		  
Query: 12 LFRGFFEGSISGSHFEIDKRPYHKNCTCALHGSSGTA--NCPHQKPP---------KVSY 71
          +FR  FEG ISG    I++RPYHKNC CALH  S  A  N   ++PP          +S+
Sbjct: 6  IFRSIFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSSESISF 65

Query: 72 PIKRSWSEGSLAMYSSLNPSPSSS 85
          PI+RSWSEG++   +  + S SSS
Sbjct: 66 PIRRSWSEGNIMAMNLFSSSSSSS 89

[Close]

BLAST of Spo08586.1 vs. TAIR (Arabidopsis)
Match: AT5G35110.1 (unknown protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.100e-11
Identity = 44/116 (37.93%), Postives = 61/116 (52.59%), Query Frame = 1

		  
Query: 3   STGVGDGGLLFRGFFEGSISGSHFEIDKRPYHKNCTCALH----GSSGTANCPHQKPPKV 62
           + G  DG  +FR  FEG IS     I +RPYHKNC CALH    G      C H +   V
Sbjct: 2   AAGSMDG--IFRNIFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEVV 61

Query: 63  SYPIKRSWSEGSLAMYSSLNPSPSSSPASVDHISKGNGTPPLPRTSSSSTLHTCPI 115
            +PI+RSWSEG+     +L+ + SSS +++  +S  +    L   SS+ +    PI
Sbjct: 62  MFPIQRSWSEGNSL---ALHLASSSSSSNLQSLSSSSSISTLASLSSTVSDIDSPI 112

The following BLAST results are available for this feature:

BLAST of Spo08586.1 vs. NCBI nr
BLAST of Spo08586.1 vs. UniProtKB/TrEMBL
BLAST of Spo08586.1 vs. ExPASy Swiss-Prot
BLAST of Spo08586.1 vs. TAIR (Arabidopsis)

BLAST of Spo08586.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902212255\|gb\|KNA16921.1\|	1.2e-60	100.	hypothetical protein SOVF_0848...	[more]
gi\|731352871\|ref\|XP_010687766.1\|	5.1e-30	71.1	PREDICTED: uncharacterized pro...	[more]
gi\|604329723\|gb\|EYU34913.1\|	4.9e-17	59.0	hypothetical protein MIMGU_mgv...	[more]
gi\|848879773\|ref\|XP_012840277.1\|	4.9e-17	59.0	PREDICTED: uncharacterized pro...	[more]
gi\|645275596\|ref\|XP_008242894.1\|	7.1e-16	52.6	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo08586.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RBN7_SPIOL	8.7e-61	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BUE6_BETVU	3.5e-30	71.1	Uncharacterized protein OS=Bet...	[more]
A0A022R5K9_ERYGU	3.4e-17	59.0	Uncharacterized protein (Fragm...	[more]
M5VRL2_PRUPE	5.0e-16	52.6	Uncharacterized protein OS=Pru...	[more]
A0A061GQ94_THECC	3.2e-15	56.3	Uncharacterized protein OS=The...	[more]

BLAST of Spo08586.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

BLAST of Spo08586.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT2G46490.1	7.8e-13	45.2	unknown protein	[more]
AT5G35110.1	1.1e-11	37.9	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35121	FAMILY NOT NAMED	coord: 2..87 score: 1.9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo07446	0.72	Barchart \| Table
Spo09469	0.65	Barchart \| Table