Spo03215 (gene)

Overview
NameSpo03215
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr2 : 37846222 .. 37848143 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAGTGGATAGTGGTGGCGAGGTGGGTGGCGGTGGAAACGAGGAGGGACGTAGTGGGCGACATCAATAGAGAGGTGAAAGAGGTTAGGAGGTAGGAGATAGAATCCATGGAAAGGAGAAAGAGACAGACTAAAAGAATAAAGAAAAAGCAAAAAATTTTAAAGTTAAGGTTAACGGAAAAGTTGCTGGCACTAACACAAAATGGTCATTGAGGGCAATTTATGCATTTTTATATAACCTAAGAGGTATTTGATGTATGTCTAAAAAGTTGAGGGTATTTCGTGCATTTCTTTAGGGGCATTTCATGAAAAAATTGATAAAATTTTATAAGGTAATTAATACAAAAGCCGTGTATTTTTAATGTAGTAAATACCAAAAAATCTTTTTTTAAAATTTAAAATTTGGGGTTGAACGTGCTTGTAAACGAGCTTATAAACGAACACAAACGAGCATATAAATGAACTTAAACAGAATATTCACAAGCCTATACGAGCCGAAAATTAAGTTGTTCGAGCTTGTATCCTTTATTAAACGAGCTTGAAATTTTTGTTCAGACTATTTTGTTTGTTAATGAACGAGTTTTGGACGAAGTTTAAACAAACTTATTCACGAGCAGTTCAGGGACTTATAATTTCATTAACATCTACGTTGCTCACCAAAGATGAGAATGGAGAGGCGGCATGCTGTGAGCTATTTGCTCACACATAATAAGGACATTTTTGTAATTTCGCACCAAAAAATAAACAAACTAGGAATAAGACAAAATGAATAGGACAAACGGAAAAAGGACAAAAGTAATAAATAAAAGAGAGGAAATGAAAAAAGAGGAGAGAGAAAGTGACATAAGGTACCATTTATATAAAAGTGTAATTTTCTTTTAAAACAGTATCATTTCTTTTAAACGTACCATATCTTTAAGAAACAAGTAGGAGTACCATTTTTGTTTAACAAGTACTCCCTCTGTCCCAAAATATAGTGCATGTTTTCTATTTTGGATGTCTCAAAATGTTATGCATGTTTTCCATTTTGGGTGTCCCAAAATGTGGTCCAATATTTAATGTTTGTACTTAGAAATGGGGTGGTCCTATCATTAATGTTTCTATCGTGAAAATGTGATCCAATAATTTATTAGTTTTTGTTTTTTGTATAAAAATTAAAAAAAATTATGTACTTTTCTTTTAAAGTACAATAACATTAATATTTCATAATGTTATTTTTCAAGTTTCTTAATTCCCGTACCATTCTTATTCAAAACATACCATTTTTATTTAACAAACACATTTATAATATTTTTTTTTTTTTGATAAAACAAACACATTTATAATATAATAGCAACAAATTTTGTCATTTTTTTCCTATTTTGTCACTTTGTTGCTGTTATGTTTTTGCAAATAACTCATAGCAAGCGATTTTTATTTCCTCCACCGAAGATCTCGATGTCTGTTGTATTAAATAGATAATTTTATAAAAATCTTGGTTGTCTCTTTTGGTAGGGCATCACAGTATTAAAATATATGGAAGCTAAGTATCCAGGTTGAAAACCGACGTCCAACATCCCCCACCTTCAGTCCTTTACTGACATACATACGTTTCCCCTTATTTCTCGATTTGGTTTTGTTTTTCCCAGTGTTAGGTAAATTGTCTTCCTTATTTTTGTGTTAATTGTTAGATTAGAATCCAATCTAAAAAGCAAATAGCTTTGACTACTTTCTCATTTCTCAATATCTTTTACCCAATTTCAGTAAATTATGATTGCAGCTCTCAGCTGAAAACTTCCCCAAAACAGTTGATTTTGCTGGGTTGTTGTTGTTTGATTTTGGTCAATTTCATTACAAAAATTGATGTTAGTATTTCACATTTGAACACATTTTGGGATCTGGGGTTTTCACAAAGATCCAATTACACAAATCACCGCTAA

mRNA sequence

ATGGGAAAGTGGATAGTGGTGGCGAGGTGGGTGGCGGTGGAAACGAGGAGGGACGTAGTGGGCGACATCAATAGAGAGATTAGAATCCAATCTAAAAAGCAAATAGCTTTGACTACTTTCTCATTTCTCAATATCTTTTACCCAATTTCAGTAAATTATGATTGCAGCTCTCAGCTGAAAACTTCCCCAAAACAGTTGATTTTGCTGGGTTGTTGTTGTTTGATTTTGGTCAATTTCATTACAAAAATTGATGTTAGTATTTCACATTTGAACACATTTTGGGATCTGGGGTTTTCACAAAGATCCAATTACACAAATCACCGCTAA

Coding sequence (CDS)

ATGGGAAAGTGGATAGTGGTGGCGAGGTGGGTGGCGGTGGAAACGAGGAGGGACGTAGTGGGCGACATCAATAGAGAGATTAGAATCCAATCTAAAAAGCAAATAGCTTTGACTACTTTCTCATTTCTCAATATCTTTTACCCAATTTCAGTAAATTATGATTGCAGCTCTCAGCTGAAAACTTCCCCAAAACAGTTGATTTTGCTGGGTTGTTGTTGTTTGATTTTGGTCAATTTCATTACAAAAATTGATGTTAGTATTTCACATTTGAACACATTTTGGGATCTGGGGTTTTCACAAAGATCCAATTACACAAATCACCGCTAA

Protein sequence

MGKWIVVARWVAVETRRDVVGDINREIRIQSKKQIALTTFSFLNIFYPISVNYDCSSQLKTSPKQLILLGCCCLILVNFITKIDVSISHLNTFWDLGFSQRSNYTNHR
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo03215.1Spo03215.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo03215.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03215.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03215.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03215.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048574 long-day photoperiodism, flowering
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0006346 methylation-dependent chromatin silencing
biological_process GO:0010073 meristem maintenance
biological_process GO:0010014 meristem initiation
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0019915 lipid storage
biological_process GO:0016572 histone phosphorylation
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006281 DNA repair
biological_process GO:0006306 DNA methylation
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0031048 chromatin silencing by small RNA
biological_process GO:0006338 chromatin remodeling
biological_process GO:0006312 mitotic recombination
biological_process GO:0009640 photomorphogenesis
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0010162 seed dormancy process
biological_process GO:0006432 phenylalanyl-tRNA aminoacylation
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0010050 vegetative phase change
biological_process GO:0010090 trichome morphogenesis
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0050826 response to freezing
biological_process GO:0048235 pollen sperm cell differentiation
biological_process GO:0009909 regulation of flower development
biological_process GO:0033044 regulation of chromosome organization
biological_process GO:0007131 reciprocal meiotic recombination
biological_process GO:0016567 protein ubiquitination
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0010638 positive regulation of organelle organization
biological_process GO:0007267 cell-cell signaling
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0046686 response to cadmium ion
biological_process GO:0052543 callose deposition in cell wall
biological_process GO:0006952 defense response
biological_process GO:0007030 Golgi organization
biological_process GO:0086010 membrane depolarization during action potential
biological_process GO:0061025 membrane fusion
biological_process GO:0009556 microsporogenesis
biological_process GO:0034765 regulation of ion transmembrane transport
biological_process GO:0080141 regulation of jasmonic acid biosynthetic process
biological_process GO:0010119 regulation of stomatal movement
biological_process GO:0009651 response to salt stress
biological_process GO:0009845 seed germination
biological_process GO:0007033 vacuole organization
biological_process GO:0006833 water transport
biological_process GO:0019932 second-messenger-mediated signaling
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0070588 calcium ion transmembrane transport
biological_process GO:0009298 GDP-mannose biosynthetic process
biological_process GO:0006400 tRNA modification
biological_process GO:0001510 RNA methylation
biological_process GO:0008618 7-methylguanosine metabolic process
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0006000 fructose metabolic process
biological_process GO:0006465 signal peptide processing
biological_process GO:0006094 gluconeogenesis
biological_process GO:0019307 mannose biosynthetic process
biological_process GO:0006096 glycolytic process
biological_process GO:0006972 hyperosmotic response
biological_process GO:0019853 L-ascorbic acid biosynthetic process
biological_process GO:0006508 proteolysis
biological_process GO:0006457 protein folding
biological_process GO:0015996 chlorophyll catabolic process
biological_process GO:0019722 calcium-mediated signaling
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0000812 Swr1 complex
cellular_component GO:0005829 cytosol
cellular_component GO:0009328 phenylalanine-tRNA ligase complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005730 nucleolus
cellular_component GO:0005739 mitochondrion
cellular_component GO:0035267 NuA4 histone acetyltransferase complex
cellular_component GO:0031011 Ino80 complex
cellular_component GO:0005856 cytoskeleton
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0000325 plant-type vacuole
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005787 signal peptidase complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005891 voltage-gated calcium channel complex
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0004615 phosphomannomutase activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005245 voltage-gated calcium channel activity
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0017111 nucleoside-triphosphatase activity
molecular_function GO:0008233 peptidase activity
molecular_function GO:0005200 structural constituent of cytoskeleton
molecular_function GO:0000049 tRNA binding
molecular_function GO:0004826 phenylalanine-tRNA ligase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005515 protein binding
molecular_function GO:0019905 syntaxin binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo197630.75Barchart | Table
Spo065210.75Barchart | Table
Spo067150.74Barchart | Table
Spo165290.73Barchart | Table
Spo086130.72Barchart | Table
Spo156060.72Barchart | Table
Spo254220.71Barchart | Table
Spo032140.70Barchart | Table
Spo207720.70Barchart | Table
Spo048150.70Barchart | Table
Spo198990.70Barchart | Table
Spo184530.70Barchart | Table
Spo170550.70Barchart | Table
Spo181600.70Barchart | Table
Spo104430.70Barchart | Table
Spo190300.69Barchart | Table
Spo124000.69Barchart | Table
Spo029620.69Barchart | Table
Spo122190.69Barchart | Table
Spo110210.69Barchart | Table
Spo103960.69Barchart | Table
Spo032500.69Barchart | Table
Spo178890.69Barchart | Table
Spo220530.69Barchart | Table
Spo139540.69Barchart | Table
Spo225400.69Barchart | Table
Spo088680.69Barchart | Table
Spo211980.68Barchart | Table
Spo259490.68Barchart | Table
Spo258220.68Barchart | Table
Spo015070.68Barchart | Table
Spo238890.68Barchart | Table
Spo024990.68Barchart | Table
Spo088620.68Barchart | Table
Spo158240.68Barchart | Table
Spo164920.68Barchart | Table
Spo170220.68Barchart | Table
Spo120660.67Barchart | Table
Spo003850.67Barchart | Table
Spo224750.67Barchart | Table
Spo223920.67Barchart | Table
Spo127490.67Barchart | Table
Spo229700.67Barchart | Table
Spo148270.67Barchart | Table
Spo022420.67Barchart | Table
Spo207490.67Barchart | Table
Spo208870.67Barchart | Table
Spo012430.67Barchart | Table
Spo032120.67Barchart | Table
Spo177550.67Barchart | Table
Spo107260.67Barchart | Table
Spo103940.67Barchart | Table
Spo266900.67Barchart | Table
Spo099940.66Barchart | Table
Spo005790.66Barchart | Table
Spo009810.66Barchart | Table
Spo038840.66Barchart | Table
Spo042790.66Barchart | Table
Spo043480.66Barchart | Table
Spo054840.66Barchart | Table
Spo099760.66Barchart | Table
Spo120150.66Barchart | Table
Spo168690.66Barchart | Table
Spo178830.66Barchart | Table
Spo229720.66Barchart | Table
Spo177780.65Barchart | Table
Spo173910.65Barchart | Table
Spo125090.65Barchart | Table
Spo090270.65Barchart | Table
Spo059610.65Barchart | Table
Spo228690.65Barchart | Table
Spo056030.65Barchart | Table
Spo271460.65Barchart | Table
Spo053180.65Barchart | Table
Spo252990.65Barchart | Table
Spo047570.65Barchart | Table
Spo041660.65Barchart | Table
Spo258230.65Barchart | Table
Spo038950.65Barchart | Table
Spo030020.65Barchart | Table
Spo182270.65Barchart | Table