Spo18046.1 (mRNA) | SpinachBase

Overview


Name	Spo18046.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	H1 histone-like protein
Location	SpoScf_00434 : 250225 .. 252621 (-)
Sequence length	1229

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAACATCGCAGTTGGAAAGGAAAATCAACCTCCGCCGCCGGAAACGGAGGCTGAGCTGCCAAAAGTAGATGCGAAGGCGGAGGAGAAGCCTAAGAGAGGGAGGAAGCCGAAGGTTCTCAAAGAGAATAAGAAGTCTACGACTCCTCATCCTCCTTACTTCCAGGTAGTTTTCTTTTTCGCTCTGATTTATATATTTTTTGATCATAACATAGAACATATTCTGTGATTGATTGATTGATTTTGCGATCGTAAGAATTTGTTGCTCTGTTTGATTATTTCTCATGAGTTTTTGGCGATGTTCGATTGATTTTATTCTTGCTGTGTCGAGTAAATTGAAGTTGAAATTTCACAGTCGCAGAATTTGTTGCTCTGTTTGATTATTTCTCATGTATTTTTGATGATGTTCGATTAATTTTATTGTTGATTTGAGTAAATTGGAATTTAAATTAAAATTTTACAGTGACATAGTACTAAATAGTCAAACAAATTCTTTAAATCGGAAAATAATTTCGTTGATTCTGACGGTGGTTTAATTGAATTAATATCATGTTTGTTGTTCATACGCGACGAATCAATCGACTATCCGTTGATGTTGTTCATAACTCTCTAGTGATTGATGTTGCGATCGTAATTTGTTAGAATTGTTGCTCTGTTTGACTGTTTCTCATGAATTTTTGATGATATTCGATTAATGGTACTCTAATTGTATTTTTAAATTTAGATTATGTTTCTGTAGTTGAAGTTAAGAAACTGATTTCTTATACTCAATCGTTAAGCAATTTTGTTGATTCTGAAATTTTAATTGAAATAATATCATGTTTGTTTGTTGTTCATAACTCTGTTGGATTGATTTTGCGACCGTAATTTGTTACAAGTTGTTGCTCTATTTGACTACTTCTCATCAATTTTCGATGATATTCGATTAATGTTACTCTTATTGTATTTTTAAATTTAGATTTCGTTTCCGTAGTTTAAGCTAAGAAACTGATTTCTTGTACTAAATCGTTGATCAATTTTGTTGATTCTGAAAATGTTTAACTGAATTTAAGTATCATGTTTGTTGTTCATACGACGATCGAATCAATCGACGATCCTATTTGCAAATTTATTGAAAAATGATGAAATTTGTTTATGGATTAATGTTACTCTTATTGTATTTTTAAATTTAGATTATGTTTCCGTAGTTTAAGTTTAAGAAACTCTTACACGAAATCGTTAAGCAACTTTTGTGATTCTGAAAGTGATCAATTGAATTAATATCATGTTTGTTGTTCATAAAATCAATCGACGATCCAATTTGAAAAATGACGAATTTGATTTGGTGATTACAGATGATAAAAGAAGCAATAGTATCACTGAATGAAAAAGGCGGATCAAGTCCATACGCAATCGCAAAATACATGGAACAAAAACACAATTCAGTACTCCCTTCAAACTTCAGGAAAATCCTAGGCTTTCAACTGAAGAATTCAGTGTCAAAGGGTAAACTAATCAAAATCAAAGCCTCCTACAAGCTTTCCGAGGCCGGAAAGAAGAGAGAGAAATCATCATCTTCATCATCTACCACCAAGGCTGCCAGAGCAAACGCAGCGAAAGAGCCTACTAAGAGGAAGAAGAAGCCTAAGTCCAGGTCCGTTAGCAAGATCGATAACCCACTTCCTAGTAATAATAATAATCCTACTGGTAAGAGGAGTAAGAGGTCGAAGCCGAAGCAACTCAAAACGATTGCTAAGAAGTAGAGTTGATCAAAATTTCGTGCCGGACTCGAGTTTTGGTCCAAAAATGCATATTATAGGGGTGCTCAAACCCGTACTTTTACGGGTCGGGCTATTGGGCCGGACTATAGAAGTAAGAAGGCAAGCTTAGTTGGCTTTTGGTAATGGTTTTTAGGGTCTTTAAAAAGATGTAAATATTGTATTTTGTAATGGTTTGTGTTTTGTGAGTTTTAGTTTTAGTGTAGGGAAGGTGATATGGAGAGGTTATGTAATTATGGGAATAAGTTAAACTAACTACCACTCCATAATAGATAGCAGAAGCTTAGTAAGGACTAACGAGTAGTTGCCTATTCTGTCATTTTGGTTAATGTGTATGGACTTGTATTTTGCTAAGAATGAGGGATTGTGCCTTTGTAAAATATTTCTCCAAGGAAGGGAAGCTTCATTTTATTTCAGGTCGATTCTTGCCATCCTTTTTCTCTCTTGCCATAGCATCCAATTTATGGGGAATATACAAGGGGTAGGCATGGTCACAAGGTCGAGTCCATTAACGGTGAAATACTTGAGAAGATCTACGTAGTTAAACTGGTTAACTTTATGATAAGTGCTGGTTTAGAAGAGCTTTTTCTTGTTACCCAGTAAAAAAATATTCTCCCCATTTCGAAATATTTGCACCG

mRNA sequence

ATGTCGAACATCGCAGTTGGAAAGGAAAATCAACCTCCGCCGCCGGAAACGGAGGCTGAGCTGCCAAAAGTAGATGCGAAGGCGGAGGAGAAGCCTAAGAGAGGGAGGAAGCCGAAGGTTCTCAAAGAGAATAAGAAGTCTACGACTCCTCATCCTCCTTACTTCCAGATGATAAAAGAAGCAATAGTATCACTGAATGAAAAAGGCGGATCAAGTCCATACGCAATCGCAAAATACATGGAACAAAAACACAATTCAGTACTCCCTTCAAACTTCAGGAAAATCCTAGGCTTTCAACTGAAGAATTCAGTGTCAAAGGGTAAACTAATCAAAATCAAAGCCTCCTACAAGCTTTCCGAGGCCGGAAAGAAGAGAGAGAAATCATCATCTTCATCATCTACCACCAAGGCTGCCAGAGCAAACGCAGCGAAAGAGCCTACTAAGAGGAAGAAGAAGCCTAAGTCCAGGTCCGTTAGCAAGATCGATAACCCACTTCCTAGTAATAATAATAATCCTACTGGTAAGAGGAGTAAGAGGTCGAAGCCGAAGCAACTCAAAACGATTGCTAAGAAGTAGAGTTGATCAAAATTTCGTGCCGGACTCGAGTTTTGGTCCAAAAATGCATATTATAGGGGTGCTCAAACCCGTACTTTTACGGGTCGGGCTATTGGGCCGGACTATAGAAGTAAGAAGGCAAGCTTAGTTGGCTTTTGGTAATGGTTTTTAGGGTCTTTAAAAAGATGTAAATATTGTATTTTGTAATGGTTTGTGTTTTGTGAGTTTTAGTTTTAGTGTAGGGAAGGTGATATGGAGAGGTTATGTAATTATGGGAATAAGTTAAACTAACTACCACTCCATAATAGATAGCAGAAGCTTAGTAAGGACTAACGAGTAGTTGCCTATTCTGTCATTTTGGTTAATGTGTATGGACTTGTATTTTGCTAAGAATGAGGGATTGTGCCTTTGTAAAATATTTCTCCAAGGAAGGGAAGCTTCATTTTATTTCAGGTCGATTCTTGCCATCCTTTTTCTCTCTTGCCATAGCATCCAATTTATGGGGAATATACAAGGGGTAGGCATGGTCACAAGGTCGAGTCCATTAACGGTGAAATACTTGAGAAGATCTACGTAGTTAAACTGGTTAACTTTATGATAAGTGCTGGTTTAGAAGAGCTTTTTCTTGTTACCCAGTAAAAAAATATTCTCCCCATTTCGAAATATTTGCACCG

Coding sequence (CDS)

ATGTCGAACATCGCAGTTGGAAAGGAAAATCAACCTCCGCCGCCGGAAACGGAGGCTGAGCTGCCAAAAGTAGATGCGAAGGCGGAGGAGAAGCCTAAGAGAGGGAGGAAGCCGAAGGTTCTCAAAGAGAATAAGAAGTCTACGACTCCTCATCCTCCTTACTTCCAGATGATAAAAGAAGCAATAGTATCACTGAATGAAAAAGGCGGATCAAGTCCATACGCAATCGCAAAATACATGGAACAAAAACACAATTCAGTACTCCCTTCAAACTTCAGGAAAATCCTAGGCTTTCAACTGAAGAATTCAGTGTCAAAGGGTAAACTAATCAAAATCAAAGCCTCCTACAAGCTTTCCGAGGCCGGAAAGAAGAGAGAGAAATCATCATCTTCATCATCTACCACCAAGGCTGCCAGAGCAAACGCAGCGAAAGAGCCTACTAAGAGGAAGAAGAAGCCTAAGTCCAGGTCCGTTAGCAAGATCGATAACCCACTTCCTAGTAATAATAATAATCCTACTGGTAAGAGGAGTAAGAGGTCGAAGCCGAAGCAACTCAAAACGATTGCTAAGAAGTAG

Protein sequence

MSNIAVGKENQPPPPETEAELPKVDAKAEEKPKRGRKPKVLKENKKSTTPHPPYFQMIKEAIVSLNEKGGSSPYAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSEAGKKREKSSSSSSTTKAARANAAKEPTKRKKKPKSRSVSKIDNPLPSNNNNPTGKRSKRSKPKQLKTIAKK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo18046	Spo18046	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo18046.1	Spo18046.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18046.1.CDS.2	Spo18046.1.CDS.2	CDS
Spo18046.1.CDS.1	Spo18046.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18046.1.utr3p.1	Spo18046.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18046.1.exon.2	Spo18046.1.exon.2	exon
Spo18046.1.exon.1	Spo18046.1.exon.1	exon

Homology

[Close]

BLAST of Spo18046.1 vs. NCBI nr
Match: gi|902192273|gb|KNA11997.1| (hypothetical protein SOVF_129790 [Spinacia oleracea])

HSP 1 Score: 346.7 bits (888), Expect = 2.600e-92
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1


		  
Query: 1   MSNIAVGKENQPPPPETEAELPKVDAKAEEKPKRGRKPKVLKENKKSTTPHPPYFQMIKE 60
           MSNIAVGKENQPPPPETEAELPKVDAKAEEKPKRGRKPKVLKENKKSTTPHPPYFQMIKE
Sbjct: 1   MSNIAVGKENQPPPPETEAELPKVDAKAEEKPKRGRKPKVLKENKKSTTPHPPYFQMIKE 60

Query: 61  AIVSLNEKGGSSPYAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSE 120
           AIVSLNEKGGSSPYAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSE
Sbjct: 61  AIVSLNEKGGSSPYAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSE 120

Query: 121 AGKKREKSSSSSSTTKAARANAAKEPTKRKKKPKSRSVSKIDNPLPSNNNNPTGKRSKRS 180
           AGKKREKSSSSSSTTKAARANAAKEPTKRKKKPKSRSVSKIDNPLPSNNNNPTGKRSKRS
Sbjct: 121 AGKKREKSSSSSSTTKAARANAAKEPTKRKKKPKSRSVSKIDNPLPSNNNNPTGKRSKRS 180

Query: 181 KPKQLKTIAKK 192
           KPKQLKTIAKK
Sbjct: 181 KPKQLKTIAKK 191

[Close]

BLAST of Spo18046.1 vs. NCBI nr
Match: gi|731337568|ref|XP_010679857.1| (PREDICTED: histone H1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 197.2 bits (500), Expect = 2.600e-47
Identity = 129/185 (69.73%), Postives = 144/185 (77.84%), Query Frame = 1


		  
Query: 15  PETEAELPKVDAKAEEKP-KRGRKPKVLKENKKSTTPHPPYFQMIKEAIVSLNEKGGSSP 74
           P TE ++P+   + E K  KR +K K   E K     HPPYFQMIKEAI++LNEKGGSSP
Sbjct: 18  PATEVKVPEEKPEVETKGRKREKKQKSSMEKKHKAPSHPPYFQMIKEAILALNEKGGSSP 77

Query: 75  YAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSEAGKKREKS----- 134
           YAIAK+MEQKH +VLPSNFRKILG QLKNSVSKGKLIK+KASYKLSEAGKKR +      
Sbjct: 78  YAIAKFMEQKHKTVLPSNFRKILGLQLKNSVSKGKLIKVKASYKLSEAGKKRSEKGSKSR 137

Query: 135 SSSSSTTKAARANAAKEPTKRKKKPKSRSVSKIDNPLPSNNNNPTGKRSKRSKPKQ--LK 192
           SSSSSTTKAARANAAKEPTKR ++PKS+SVSKIDN  P  N   T +RSKRSKPKQ  LK
Sbjct: 138 SSSSSTTKAARANAAKEPTKR-RRPKSKSVSKIDN--PPVNPAITARRSKRSKPKQKLLK 197

[Close]

BLAST of Spo18046.1 vs. NCBI nr
Match: gi|14594811|emb|CAC43291.1| (putative linker histone H1 variant protein [Beta vulgaris])

HSP 1 Score: 194.9 bits (494), Expect = 1.300e-46
Identity = 127/185 (68.65%), Postives = 144/185 (77.84%), Query Frame = 1


		  
Query: 15  PETEAELPKVDAKAEEKP-KRGRKPKVLKENKKSTTPHPPYFQMIKEAIVSLNEKGGSSP 74
           P TE ++P+   + + K  KR +K K   E K     HPPYFQMIKEAI++LNEKGGSSP
Sbjct: 18  PATEVKVPEEKPEVDTKGRKREKKQKSSMEKKHKAPSHPPYFQMIKEAILALNEKGGSSP 77

Query: 75  YAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSEAGKKREKS----- 134
           YAIAK+MEQKH +VLPSNFRKILG QLKNSVS+GKLIK+KASYKLSEAGKKR +      
Sbjct: 78  YAIAKFMEQKHKTVLPSNFRKILGLQLKNSVSRGKLIKVKASYKLSEAGKKRSEKGSKSR 137

Query: 135 SSSSSTTKAARANAAKEPTKRKKKPKSRSVSKIDNPLPSNNNNPTGKRSKRSKPKQ--LK 192
           SSSSSTTKAARANAAKEPTKR ++PKS+SVSKIDN  P  N   T +RSKRSKPKQ  LK
Sbjct: 138 SSSSSTTKAARANAAKEPTKR-RRPKSKSVSKIDN--PPVNPAITARRSKRSKPKQKLLK 197

[Close]

BLAST of Spo18046.1 vs. NCBI nr
Match: gi|743899871|ref|XP_011043228.1| (PREDICTED: histone H1-like [Populus euphratica])

HSP 1 Score: 140.6 bits (353), Expect = 2.900e-30
Identity = 95/192 (49.48%), Postives = 123/192 (64.06%), Query Frame = 1


		  
Query: 4   IAVGKENQPPPPETEAELPKVDAKAEEKPKRGRKPKVLKENKK-----STTPHPPYFQMI 63
           +   KE +   P  E      + K EEKP + +KP+  +E K          HPPYFQMI
Sbjct: 1   MTTSKEAETEAPVVEQPPATEELKVEEKPLKEKKPRTPREKKPREPKPKAVAHPPYFQMI 60

Query: 64  KEAIVSLNEKGGSSPYAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKL 123
           KEAI++LNEK GSSPYAIAKYME+KH +VLP+NF+KILG QLKNS ++GKLIKI+ASYKL
Sbjct: 61  KEAILALNEKSGSSPYAIAKYMEEKHKAVLPANFKKILGLQLKNSAARGKLIKIRASYKL 120

Query: 124 SEAGKKREKSSSSSSTTKAARANAAKEPTKRKKKP--KSRSVSKIDNPLPSNNNNPTGKR 183
           SEAGKK +     S+T K ++ ++A + TK  K    K+RSV+K D            K+
Sbjct: 121 SEAGKKEK-----STTGKVSKGSSAVKKTKEVKPSMRKTRSVNKADAGAKKVVGAKKAKK 180

Query: 184 SKRSKPKQLKTI 189
           S  +KPKQ K+I
Sbjct: 181 SAAAKPKQPKSI 187

[Close]

BLAST of Spo18046.1 vs. NCBI nr
Match: gi|702467348|ref|XP_010029700.1| (PREDICTED: histone H1 [Eucalyptus grandis])

HSP 1 Score: 139.4 bits (350), Expect = 6.400e-30
Identity = 96/184 (52.17%), Postives = 121/184 (65.76%), Query Frame = 1


		  
Query: 13  PPPETEAELPKVDAKAEEKPKRGRKPKVLKENKK---STTPHPPYFQMIKEAIVSLNEKG 72
           P P  E E PK +A+A+ KP + RKP+  +E K+    T  HPPYFQMIKEA+++LNEK 
Sbjct: 26  PVPAAEEEKPKEEAEAK-KPAKERKPRAPREKKQRPPKTASHPPYFQMIKEAVLALNEKS 85

Query: 73  GSSPYAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSEAGKKREKSS 132
           GSSPYAIAKYME KH +VLP+NFRKIL  QLKNS +KGKLIK+KASYKLSEAGKK     
Sbjct: 86  GSSPYAIAKYMEDKHKAVLPANFRKILALQLKNSAAKGKLIKVKASYKLSEAGKKESARP 145

Query: 133 SSSSTTKAARANAAKEPTKRKKKPKSRSVSKIDNPLPSNNNNPTGKRSKRSKP--KQLKT 192
           S+  + KA  A AA+   K K+ P +++      P+      P  KRS++ +   K  K 
Sbjct: 146 SAKPSKKAEAAPAAR---KSKEPPMAKA-----PPMAMATTTPRAKRSRKPEAPVKPAKK 200

[Close]

BLAST of Spo18046.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXK6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_129790 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 1.800e-92
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1


		  
Query: 1   MSNIAVGKENQPPPPETEAELPKVDAKAEEKPKRGRKPKVLKENKKSTTPHPPYFQMIKE 60
           MSNIAVGKENQPPPPETEAELPKVDAKAEEKPKRGRKPKVLKENKKSTTPHPPYFQMIKE
Sbjct: 1   MSNIAVGKENQPPPPETEAELPKVDAKAEEKPKRGRKPKVLKENKKSTTPHPPYFQMIKE 60

Query: 61  AIVSLNEKGGSSPYAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSE 120
           AIVSLNEKGGSSPYAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSE
Sbjct: 61  AIVSLNEKGGSSPYAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSE 120

Query: 121 AGKKREKSSSSSSTTKAARANAAKEPTKRKKKPKSRSVSKIDNPLPSNNNNPTGKRSKRS 180
           AGKKREKSSSSSSTTKAARANAAKEPTKRKKKPKSRSVSKIDNPLPSNNNNPTGKRSKRS
Sbjct: 121 AGKKREKSSSSSSTTKAARANAAKEPTKRKKKPKSRSVSKIDNPLPSNNNNPTGKRSKRS 180

Query: 181 KPKQLKTIAKK 192
           KPKQLKTIAKK
Sbjct: 181 KPKQLKTIAKK 191

[Close]

BLAST of Spo18046.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F1Q7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g129940 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.800e-47
Identity = 129/185 (69.73%), Postives = 144/185 (77.84%), Query Frame = 1


		  
Query: 15  PETEAELPKVDAKAEEKP-KRGRKPKVLKENKKSTTPHPPYFQMIKEAIVSLNEKGGSSP 74
           P TE ++P+   + E K  KR +K K   E K     HPPYFQMIKEAI++LNEKGGSSP
Sbjct: 18  PATEVKVPEEKPEVETKGRKREKKQKSSMEKKHKAPSHPPYFQMIKEAILALNEKGGSSP 77

Query: 75  YAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSEAGKKREKS----- 134
           YAIAK+MEQKH +VLPSNFRKILG QLKNSVSKGKLIK+KASYKLSEAGKKR +      
Sbjct: 78  YAIAKFMEQKHKTVLPSNFRKILGLQLKNSVSKGKLIKVKASYKLSEAGKKRSEKGSKSR 137

Query: 135 SSSSSTTKAARANAAKEPTKRKKKPKSRSVSKIDNPLPSNNNNPTGKRSKRSKPKQ--LK 192
           SSSSSTTKAARANAAKEPTKR ++PKS+SVSKIDN  P  N   T +RSKRSKPKQ  LK
Sbjct: 138 SSSSSTTKAARANAAKEPTKR-RRPKSKSVSKIDN--PPVNPAITARRSKRSKPKQKLLK 197

[Close]

BLAST of Spo18046.1 vs. UniProtKB/TrEMBL
Match: Q949M1_BETVU (Putative linker histone H1 variant protein OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 9.000e-47
Identity = 127/185 (68.65%), Postives = 144/185 (77.84%), Query Frame = 1


		  
Query: 15  PETEAELPKVDAKAEEKP-KRGRKPKVLKENKKSTTPHPPYFQMIKEAIVSLNEKGGSSP 74
           P TE ++P+   + + K  KR +K K   E K     HPPYFQMIKEAI++LNEKGGSSP
Sbjct: 18  PATEVKVPEEKPEVDTKGRKREKKQKSSMEKKHKAPSHPPYFQMIKEAILALNEKGGSSP 77

Query: 75  YAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSEAGKKREKS----- 134
           YAIAK+MEQKH +VLPSNFRKILG QLKNSVS+GKLIK+KASYKLSEAGKKR +      
Sbjct: 78  YAIAKFMEQKHKTVLPSNFRKILGLQLKNSVSRGKLIKVKASYKLSEAGKKRSEKGSKSR 137

Query: 135 SSSSSTTKAARANAAKEPTKRKKKPKSRSVSKIDNPLPSNNNNPTGKRSKRSKPKQ--LK 192
           SSSSSTTKAARANAAKEPTKR ++PKS+SVSKIDN  P  N   T +RSKRSKPKQ  LK
Sbjct: 138 SSSSSTTKAARANAAKEPTKR-RRPKSKSVSKIDN--PPVNPAITARRSKRSKPKQKLLK 197

[Close]

BLAST of Spo18046.1 vs. UniProtKB/TrEMBL
Match: A0A059ASJ8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02364 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.500e-30
Identity = 96/184 (52.17%), Postives = 121/184 (65.76%), Query Frame = 1


		  
Query: 13  PPPETEAELPKVDAKAEEKPKRGRKPKVLKENKK---STTPHPPYFQMIKEAIVSLNEKG 72
           P P  E E PK +A+A+ KP + RKP+  +E K+    T  HPPYFQMIKEA+++LNEK 
Sbjct: 26  PVPAAEEEKPKEEAEAK-KPAKERKPRAPREKKQRPPKTASHPPYFQMIKEAVLALNEKS 85

Query: 73  GSSPYAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSEAGKKREKSS 132
           GSSPYAIAKYME KH +VLP+NFRKIL  QLKNS +KGKLIK+KASYKLSEAGKK     
Sbjct: 86  GSSPYAIAKYMEDKHKAVLPANFRKILALQLKNSAAKGKLIKVKASYKLSEAGKKESARP 145

Query: 133 SSSSTTKAARANAAKEPTKRKKKPKSRSVSKIDNPLPSNNNNPTGKRSKRSKP--KQLKT 192
           S+  + KA  A AA+   K K+ P +++      P+      P  KRS++ +   K  K 
Sbjct: 146 SAKPSKKAEAAPAAR---KSKEPPMAKA-----PPMAMATTTPRAKRSRKPEAPVKPAKK 200

[Close]

BLAST of Spo18046.1 vs. UniProtKB/TrEMBL
Match: U5GBL2_POPTR (HISTONE H1-3 family protein OS=Populus trichocarpa GN=POPTR_0005s11860g PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.800e-30
Identity = 94/192 (48.96%), Postives = 123/192 (64.06%), Query Frame = 1


		  
Query: 4   IAVGKENQPPPPETEAELPKVDAKAEEKPKRGRKPKVLKENKK-----STTPHPPYFQMI 63
           +   KE +   P  E      + + EEKP + +KP+  +E K          HPPYFQMI
Sbjct: 1   MTTSKEAETEAPVVEQPPATEEPQVEEKPLKEKKPRTPREKKPRQPKPKAVAHPPYFQMI 60

Query: 64  KEAIVSLNEKGGSSPYAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKL 123
           KEAI++LNEK GSSPYAIAKYME+KH +VLP+NF+KILG QLKNS ++GKLIKI+ASYKL
Sbjct: 61  KEAILALNEKSGSSPYAIAKYMEEKHKAVLPANFKKILGLQLKNSAARGKLIKIRASYKL 120

Query: 124 SEAGKKREKSSSSSSTTKAARANAAKEPTKRKKKP--KSRSVSKIDNPLPSNNNNPTGKR 183
           SEAGKK +     S+T K ++ ++A + TK  K    K+RSV+K D            K+
Sbjct: 121 SEAGKKEK-----STTGKVSKGSSAVKKTKEVKPSMRKTRSVNKADAGAKKVVGAKKAKK 180

Query: 184 SKRSKPKQLKTI 189
           S  +KPKQ K+I
Sbjct: 181 SAAAKPKQPKSI 187

[Close]

BLAST of Spo18046.1 vs. ExPASy Swiss-Prot
Match: H1_SOLPN (Histone H1 OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.900e-30
Identity = 88/189 (46.56%), Postives = 117/189 (61.90%), Query Frame = 1


		  
Query: 5   AVGKENQPPPPETEAELPKVDAKAEEKPKRGRKPKVLKENKKSTTPHPPYFQMIKEAIVS 64
           A+G+   P   +   E  KV  +A    K+ R PK  K        HPPYFQMIKEA+++
Sbjct: 3   AIGEVENPTVVQRPTEASKVKEQAPATDKKPRAPKEKKPKSAKAVTHPPYFQMIKEALLA 62

Query: 65  LNEKGGSSPYAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSEAGKK 124
           LNEKGGSSPYA+AKYME KH   LP+NFRKILG QLKNS +KGKLIKIKASYKLSEAGKK
Sbjct: 63  LNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKLSEAGKK 122

Query: 125 REKSSSSSSTTKAARANAAKEPTKRKKKPKSRSVSKID-----NPLPSNNNNPTGKRSKR 184
             ++++ +ST K  +A++ K+P   +    +   +++       P P        ++S  
Sbjct: 123 --ETTTKTSTKKLPKADSKKKPRSTRATATAAKKTEVPKKAKATPKPKKVGAKRTRKSTP 182

Query: 185 SKPKQLKTI 189
           +K KQ K+I
Sbjct: 183 AKAKQPKSI 189

[Close]

BLAST of Spo18046.1 vs. ExPASy Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 1.200e-15
Identity = 76/192 (39.58%), Postives = 100/192 (52.08%), Query Frame = 1


		  
Query: 12  PPPPETEAELPKVDAKAEEKPKRGRKPKVLKENKKSTTPHPPYFQMIKEAIVSLNEKGGS 71
           P  P      P  DA A  K K+   PK     K+++  H PY +M+ EAI SL E+ GS
Sbjct: 17  PEAPADAPAAPAADANAA-KAKKATAPK-----KRASPTHLPYAEMVSEAITSLKERTGS 76

Query: 72  SPYAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSEAGKKR------ 131
           S YAIAK++E KH + LP NFRK+L  QLK  V+ GKL K+K SYKLS A K        
Sbjct: 77  SSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLSSATKPNPKPKAA 136

Query: 132 -EKSSSSSSTTKAARANAAKEPTKRKKKPKSRSVSKIDNPL-PSNNNNPTGKRSKRSKPK 191
            +K  + +   KAA    AK P K K   K +  +K    + P     P  K + ++KPK
Sbjct: 137 PKKPKTGAKKPKAAAKPKAKTPAKAKPATKPKPAAKPKAVVKPKTPAKPKAKPAAKAKPK 196

[Close]

BLAST of Spo18046.1 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.600e-15
Identity = 78/182 (42.86%), Postives = 110/182 (60.44%), Query Frame = 1


		  
Query: 13  PPPETEAELP-KVDAKAE-EKPKRGRKPKVLKENK-KSTTPHPPYFQMIKEAIVSLNEKG 72
           P   TE E+P K + KAE EK K+ +  K  K +K ++   HP Y +MIK+AIVSL EK 
Sbjct: 21  PTTITEPEVPEKEEPKAEVEKTKKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKN 80

Query: 73  GSSPYAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSEAGKKREKSS 132
           GSS YAIAK++E+K    LP+NF+K+L   LK +V+ GKLIK+K S+KLS A KK   + 
Sbjct: 81  GSSQYAIAKFIEEKQKQ-LPANFKKLLLQNLKKNVASGKLIKVKGSFKLSAAAKKPAVAK 140

Query: 133 SSSSTTKAARANAAKEPTKRKKKPKSRSVSKIDNPLPSNNNNPTGKRSKRSKPKQLKTIA 192
             + T  AA+A + K   K   KPK+++V K   P  ++       + K++  K  KT+A
Sbjct: 141 PKAKT--AAKAKSVK--AKPAAKPKAKAVVK---PKVASKAKAVAAKPKKAAAKP-KTVA 193

[Close]

BLAST of Spo18046.1 vs. ExPASy Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.800e-15
Identity = 74/187 (39.57%), Postives = 102/187 (54.55%), Query Frame = 1


		  
Query: 17  TEAELPKVDAKAEEKPK-RGRKPKVLKE-----------NKKSTTPHPPYFQMIKEAIVS 76
           T A+ P  DA  E+KP  +GRK K +KE            K++ + HP Y +MIK+AIV+
Sbjct: 16  TAADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKDAIVT 75

Query: 77  LNEKGGSSPYAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSEAGKK 136
           L E+ GSS YAI K++E+K    LP  FRK+L   LK  V+ GKL+K+KAS+KL  A   
Sbjct: 76  LKERTGSSQYAIQKFIEEKRKE-LPPTFRKLLLLNLKRLVASGKLVKVKASFKLPSA--- 135

Query: 137 REKSSSSSSTTKAARANAAKEPTKRKKKPKSRSVSKIDNPLPSNNNNPTGKRSKRSKPKQ 192
               S+ +S+ KA    AA++    KKKP + +V+K              KR   +  K 
Sbjct: 136 ----SAKASSPKA----AAEKSAPAKKKPATVAVTK-------------AKRKVAAASKA 177

[Close]

BLAST of Spo18046.1 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.300e-14
Identity = 71/182 (39.01%), Postives = 103/182 (56.59%), Query Frame = 1


		  
Query: 3   NIAVGKENQPPPPETEAELPKVDAKAEEKPKRGRKPKVLKENKKSTTP-HPPYFQMIKEA 62
           N  V ++  P   + EA  P    KA+++ K  +KP   +  K+S TP HPPYF+MIK+A
Sbjct: 10  NEVVEEQAAPETVKDEANPPAKSGKAKKETK-AKKPAAPR--KRSATPTHPPYFEMIKDA 69

Query: 63  IVSLNEKGGSSPYAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSEA 122
           IV+L E+ GSS +AI K++E+K  S LPSNF+K+L  QLK  V+  KL+K+K SYKL   
Sbjct: 70  IVTLKERTGSSQHAITKFIEEKQKS-LPSNFKKLLLTQLKKFVASEKLVKVKNSYKLPSG 129

Query: 123 GKKREKSSSSSSTTKAARANAAKEPTKRKKKPKSRSVSKIDNPLPSNNNNPTGKRSKRSK 182
            K    +  +     AA++  A +P K   KPK++  +K     P+    P  K    +K
Sbjct: 130 SKPAAAAVPAKKKPAAAKSKPAAKP-KAAVKPKAKPAAKAK---PAAKAKPAAKAKPAAK 183

Query: 183 PK 184
            K
Sbjct: 190 AK 183

[Close]

BLAST of Spo18046.1 vs. TAIR (Arabidopsis)
Match: AT2G18050.1 (histone H1-3)

HSP 1 Score: 101.3 bits (251), Expect = 6.800e-22
Identity = 74/164 (45.12%), Postives = 95/164 (57.93%), Query Frame = 1


		  
Query: 28  AEEKPKRGRKPKVLKENKKSTTPHPPYFQMIKEAIVSLNEKGGSSPYAIAKYMEQKHNSV 87
           AE+K  + + P   K  K  TT HPPYFQMIKEA++ L EK GSSPYAIAK +E+KH S+
Sbjct: 2   AEDKILK-KTPAAKKPRKPKTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSL 61

Query: 88  LPSNFRKILGFQLKNSVSKGKLIKIKASYKLSEAGKKREKSSSSSSTTKAARANAAKEPT 147
           LP +FRK L  QLKNSV+KGKL+KI+ASYKLS+  K   +     +  K       KE T
Sbjct: 62  LPESFRKTLSLQLKNSVAKGKLVKIRASYKLSDTTKMITRQQDKKN--KKNMKQEDKEIT 121

Query: 148 KRKKKPKSRSVSKIDNPLPSNNNNPTGKRSKRSKPKQLKTIAKK 192
           KR +   +R    +      N      K  K  +PK +K+   K
Sbjct: 122 KRTRSSSTRPKKTVS----VNKQEKKRKVKKARQPKSIKSSVGK 158

[Close]

BLAST of Spo18046.1 vs. TAIR (Arabidopsis)
Match: AT1G06760.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 82.4 bits (202), Expect = 3.300e-16
Identity = 74/187 (39.57%), Postives = 102/187 (54.55%), Query Frame = 1


		  
Query: 17  TEAELPKVDAKAEEKPK-RGRKPKVLKE-----------NKKSTTPHPPYFQMIKEAIVS 76
           T A+ P  DA  E+KP  +GRK K +KE            K++ + HP Y +MIK+AIV+
Sbjct: 16  TAADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKDAIVT 75

Query: 77  LNEKGGSSPYAIAKYMEQKHNSVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSEAGKK 136
           L E+ GSS YAI K++E+K    LP  FRK+L   LK  V+ GKL+K+KAS+KL  A   
Sbjct: 76  LKERTGSSQYAIQKFIEEKRKE-LPPTFRKLLLLNLKRLVASGKLVKVKASFKLPSA--- 135

Query: 137 REKSSSSSSTTKAARANAAKEPTKRKKKPKSRSVSKIDNPLPSNNNNPTGKRSKRSKPKQ 192
               S+ +S+ KA    AA++    KKKP + +V+K              KR   +  K 
Sbjct: 136 ----SAKASSPKA----AAEKSAPAKKKPATVAVTK-------------AKRKVAAASKA 177

[Close]

BLAST of Spo18046.1 vs. TAIR (Arabidopsis)
Match: AT2G30620.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.500e-13
Identity = 61/148 (41.22%), Postives = 85/148 (57.43%), Query Frame = 1


		  
Query: 26  AKAEEKPKRGRKPKVLKENKKSTTPHPPYFQMIKEAIVSLNEKGGSSPYAIAKYMEQKHN 85
           AKA +KP +   P      KK+T+ HP Y +MIK+AIV+L E+ GSS YAI K++E+KH 
Sbjct: 41  AKATKKPVKAAAPT----KKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHK 100

Query: 86  SVLPSNFRKILGFQLKNSVSKGKLIKIKASYKLSEAGK----------KREKSSSSSSTT 145
           S LP  FRK+L   LK  V+  KL+K+KAS+K+  A            K++ +  +    
Sbjct: 101 S-LPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPAAPVKKKATVVAKPKG 160

Query: 146 KAARANA---AKEPTKRKKKPKSRSVSK 161
           K A A A   AK   K  KKP ++ V+K
Sbjct: 161 KVAAAVAPAKAKAAAKGTKKPAAKVVAK 183

The following BLAST results are available for this feature:

BLAST of Spo18046.1 vs. NCBI nr
BLAST of Spo18046.1 vs. UniProtKB/TrEMBL
BLAST of Spo18046.1 vs. ExPASy Swiss-Prot
BLAST of Spo18046.1 vs. TAIR (Arabidopsis)

BLAST of Spo18046.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902192273\|gb\|KNA11997.1\|	2.6e-92	100.	hypothetical protein SOVF_1297...	[more]
gi\|731337568\|ref\|XP_010679857.1\|	2.6e-47	69.7	PREDICTED: histone H1 [Beta vu...	[more]
gi\|14594811\|emb\|CAC43291.1\|	1.3e-46	68.6	putative linker histone H1 var...	[more]
gi\|743899871\|ref\|XP_011043228.1\|	2.9e-30	49.4	PREDICTED: histone H1-like [Po...	[more]
gi\|702467348\|ref\|XP_010029700.1\|	6.4e-30	52.1	PREDICTED: histone H1 [Eucalyp...	[more]

BLAST of Spo18046.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QXK6_SPIOL	1.8e-92	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8F1Q7_BETVU	1.8e-47	69.7	Uncharacterized protein OS=Bet...	[more]
Q949M1_BETVU	9.0e-47	68.6	Putative linker histone H1 var...	[more]
A0A059ASJ8_EUCGR	4.5e-30	52.1	Uncharacterized protein OS=Euc...	[more]
U5GBL2_POPTR	5.8e-30	48.9	HISTONE H1-3 family protein OS...	[more]

BLAST of Spo18046.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
H1_SOLPN	4.9e-30	46.5	Histone H1 OS=Solanum pennelli...	[more]
H1_MAIZE	1.2e-15	39.5	Histone H1 OS=Zea mays PE=2 SV...	[more]
H1_PEA	2.6e-15	42.8	Histone H1 OS=Pisum sativum PE...	[more]
H11_ARATH	5.8e-15	39.5	Histone H1.1 OS=Arabidopsis th...	[more]
H1_SOLLC	1.3e-14	39.0	Histone H1 OS=Solanum lycopers...	[more]

BLAST of Spo18046.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT2G18050.1	6.8e-22	45.1	histone H1-3	[more]
AT1G06760.1	3.3e-16	39.5	winged-helix DNA-binding trans...	[more]
AT2G30620.1	1.5e-13	41.2	winged-helix DNA-binding trans...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 51..118 score: 7.7
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 48..115 score: 1.9
IPR005818	Linker histone H1/H5, domain H15	PROFILE	PS51504	H15	coord: 50..120 score: 29
IPR005819	Histone H5	PRINTS	PR00624	HISTONEH5	coord: 37..58 score: 8.3E-5coord: 64..81 score: 8.3E-5coord: 169..186 score: 8.3E-5coord: 135..149 score: 8.
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	1.10.10.10		coord: 46..125 score: 3.2
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 48..128 score: 6.53
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 19..191 score: 7.6
None	No IPR available	PANTHER	PTHR11467:SF50	HISTONE H1	coord: 19..191 score: 7.6

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding