Spo24227 (gene) | SpinachBase

Overview


Name	Spo24227
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	40S ribosomal protein S18
Location	chr2 : 47650562 .. 47654097 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTACATCATAAAGCCAAAAAAACCTAAATTCTCACTCCTCCATTGTTGTGCGCCTGCCTCCACTACCCAGAGTTTGAGAGAGAGCAGCCGCTTCGGTGCATCACCCATCTGCAAAAAAAAAGATGGTTCGATCTCACTCTCTTTTTGTCTATTCTCTTACTTCAAAAATCATGATATATTCTCTTAGTTTTTCCTGCTAATTTATCTGATAATGCATTGATTAATTAGGGTTTTAATTTGTTGTTTAAATTATGAACAGTCTTTGGTGGCGAATGAAGATTTCCAGCATATTTTGCGTTTGTTGAACACCAACGTTGATGGGAAGCAGAAGATCATGTTTGCCATGACTTCAATCAAGGGTATTGGTCGTCGTTACGCCAATATTTGCTGCAAGAAGGCCGACATTGACATGAACAAAAGGTAAAAATTTCTATTAATTATTATTTTTAGTACGTTTTTCATCAATTTATTTATTTTTGCGATTTTTCTTTGTTACTCCGTAGAATATACAATACAGAACATTAAATTTGTGGCCTTTTTCTTATTGAATGAATTAGCAATAGATAATACTGGAGAAATTTCAAAACAATCCTCTCGATTGGCATATCAAGTGGCATTCAAAAATATACAATCTACAAATTGTGATACAATATATTTGATATTTTCAAAAAATAAAAGAATATAATTTTAATATAAAAAGAGATTGTATATTTATTATGTAGATTGCATATTTTGGCAATTTATTTATGAAAATACCTGTTTATATGTTTCACTCTCCAATCGTGGAGATTAACTGGGCGGAGCTCATAATCCTGTTTGTTAATTTTTGTAAAATATTTCAGAATTTTGGAAATTTGTCGAAATTGTCATCATTTTGTTTAGAATGTGGATCATGAGCTTCTTGTTAGGTTCTATATAGTTTGATTTCTGAGTAGGATTTCAGCTTCATAATTTTTTATACTTGGAAATTAGTATTCTATGTGGCAAGTATATTGGTATGATTACTGCTAATTAGTAGAATCCATTGTTTGTTTAGTTGGCTACAAGTCCTTGTTGGTTTTGAAATTGTGCATTGCCAGCCTAGTTTATAATAATCTTGTAGAGAAGCTTATTCGGGTTTTGAAACCTTTGACACCAAACATTTTCCCAATTTGGTCATTGTCTTGTTTCGAACATTTCATTTTGGAAGTGTTGTCTTGTTTCGAACATCTCATTTTGGAAGTGTTTTTCCATTGTATATTGTAGTTGTATTTTTTATCCTATTCTGTTGCAGCTATCCCGTTCTGTTATGCATTTGATTCTGGTTTTATCTGCTGTCAAAGTACTTGAGCATACTTTCAGGACACCCGGAAATAACAAATTGAGGGTTTTATAATTAGTAAGAACCTGTTTATTTTACACTGCCAAGGATCTTTGTTACTAACTGGTGTTGATTCTTCTTTCTACATGGAGTCTGATCTCAATGTGAAAATGCAACAGTTTGTAGATTTGTTTCCTTTATATACCCTCATTGTATCATCAAACTTTTTCTTATTTTCTGTTAGTTTTGCATCTTTTTATCATTATTCGTTTACTCTATTTCATCTGTGTGTCCTTCATCCTTGGTAGGCAACAATATTTTTCCTCGGTTTAAGGTCACGGTGACTCGTGGCCTTCCGGCTTCCGCCCAATGTGGCAAATTTATACAACCTTCACTACAAATACAAATCAACATTGCTCTGATCAATAATTCTCTGCAACATTTCCTTTCCAGAAATTTCTCATCATTTTTAGTCTACATTCCTATTCCTGTTTGTTTCATGTGCATAGGTAATATAAGTTGACCCCTGCCCAAACCTTTTTCTTATTAGTCCTCTTCAAATCGTTGCCTATTGTATCAGGAGAATGGGCAGCAATGCAAGTCTAGGTTCTGTCTGTTAAGGCTTTACCTTGTAGTTTGGAGGAGTGGGTTTTGATTAGGGGGGGACTGTACTTGTGGCTTTTATTTTGTTGGGTGAGCTACGCATGTGTTTTTTGGTGCTGATCAACAGTATTGTGGTTTCCTTTTAGTAGAAAAGATTTAACTGACTACGGTCTTCAATTTTTCCTTGTAAAACCTCTCTTCTACTAGTATGGTATGTGTTGTGAGCATTCAACAAGATTTTTTTTAGTGGCAGATCAAGAGTATTAATGTAACTGATGCTGGTATTTGTTATACCTACTGCTTAAAGGGGGTTTGACTATTCTGCAATTCATAACATCAACTTAAAAAGACAGTAGAACAATGCAGATAACTTACTTTGACTATCATACCCCAATGTGCCATGCTTAGAAAATTTTGAGAGAAAATATATGAAGTCAGCAGACTTGACGAGGGTTCAAACTCCATAGTAGTTAGAAATAGTGGTTCCTGTCGATGAAAAATAAAACATGGTGTTCTTAAAACTAATTTAGACTCCTCAAGTCCCCAAAGTATGCTCATCTCTTCAGTATAATATCAGTGCATTTGATGGTTTTTGTTGATTCCCTTGAGGTGGATCTTTTAACTGGGCTTTACTTTTTTATATGCTTTTATTACAGTATTATTTTTACTATGCAGTTGGTTCAATGTCTTTCTGGTTTAGCACTTATTTTGTATGAATCCCTTGCATTGGTTTTTTTGTATAGAAGCTATCTCTAATTCGAAAATGTTGGTTGCAGGGCTGGTGAGCTCACAAATGCAGAGCTAGAAACATTGATGACAGTTGTAGCAAACCCTAGGCAATTCAAGGTCCCAGACTGGTTCCTTAACAGGCAGAAGGATTACAAGGATGGCAGATACAGTCAGGTTGTTTCTAACCAGCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTAAAGAAGATCAGGTGTGCTAATTATAAATATTTTTGTTGCTTTTTGCTGGGTTGATATTTAAATCCAATCTCATTTGCTTACATGATTTTTTGACTGTTTGTTTCACAGAAACCATCGTGGTCTTCGACATTACTGGGGTTTGAGAGTGCGTGGACAGCACACCAAGACTACTGGACGTAGGGGAAAGACTGTTGGTGTGTCGAAGAAGCGTTAAGGATTTCGTTATCACAAATTATGTCTGGTCTTTTCTTGGATTAAAGCCTCCTAGTATAAGAATGATACAAGTTCTATGCTTTTTGGCCAATTTCGGCAGTTTATGTTATTTTTGTAGATCATAGCTTCTGACTCTTGATGCTTTAATTTAGAGGAGGTATGGTTTAAGACATGCGGTTGTAGTGAGGAAAATATTTGATGGTTTTATGTTTTAATGATGAGATCAGACTTGTTTATTTACTTGTTTGGCTGCAACAGTTGAATTATCTGTTGCCTGGTAGTCCTGAACATTGTTAATTCTCAGTACATATCCTATTTGCTTACCTGATTGAATCTGTAGTTTAGGTGATGCTCATTCAATACCCTTGGAACTGTCGACTTCAATCCATGGTTTGTAGAGTTGAAGAATTTGAGCTCGAAACATGGAGCTCCCTCCATGAATGTTTGTCAAAATAATTGTTCCG

mRNA sequence

TTTTACATCATAAAGCCAAAAAAACCTAAATTCTCACTCCTCCATTGTTGTGCGCCTGCCTCCACTACCCAGAGTTTGAGAGAGAGCAGCCGCTTCGGTGCATCACCCATCTGCAAAAAAAAAGATGTCTTTGGTGGCGAATGAAGATTTCCAGCATATTTTGCGTTTGTTGAACACCAACGTTGATGGGAAGCAGAAGATCATGTTTGCCATGACTTCAATCAAGGGTATTGGTCGTCGTTACGCCAATATTTGCTGCAAGAAGGCCGACATTGACATGAACAAAAGGGCTGGTGAGCTCACAAATGCAGAGCTAGAAACATTGATGACAGTTGTAGCAAACCCTAGGCAATTCAAGGTCCCAGACTGGTTCCTTAACAGGCAGAAGGATTACAAGGATGGCAGATACAGTCAGGTTGTTTCTAACCAGCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTAAAGAAGATCAGAAACCATCGTGGTCTTCGACATTACTGGGGTTTGAGAGTGCGTGGACAGCACACCAAGACTACTGGACGTAGGGGAAAGACTGTTGGTGTGTCGAAGAAGCGTTAAGGATTTCGTTATCACAAATTATGTCTGGTCTTTTCTTGGATTAAAGCCTCCTAGTATAAGAATGATACAAGTTCTATGCTTTTTGGCCAATTTCGGCAGTTTATGTTATTTTTGTAGATCATAGCTTCTGACTCTTGATGCTTTAATTTAGAGGAGGTATGGTTTAAGACATGCGGTTGTAGTGAGGAAAATATTTGATGGTTTTATGTTTTAATGATGAGATCAGACTTGTTTATTTACTTGTTTGGCTGCAACAGTTGAATTATCTGTTGCCTGGTAGTCCTGAACATTGTTAATTCTCAGTACATATCCTATTTGCTTACCTGATTGAATCTGTAGTTTAGGTGATGCTCATTCAATACCCTTGGAACTGTCGACTTCAATCCATGGTTTGTAGAGTTGAAGAATTTGAGCTCGAAACATGGAGCTCCCTCCATGAATGTTTGTCAAAATAATTGTTCCG

Coding sequence (CDS)

ATGTCTTTGGTGGCGAATGAAGATTTCCAGCATATTTTGCGTTTGTTGAACACCAACGTTGATGGGAAGCAGAAGATCATGTTTGCCATGACTTCAATCAAGGGTATTGGTCGTCGTTACGCCAATATTTGCTGCAAGAAGGCCGACATTGACATGAACAAAAGGGCTGGTGAGCTCACAAATGCAGAGCTAGAAACATTGATGACAGTTGTAGCAAACCCTAGGCAATTCAAGGTCCCAGACTGGTTCCTTAACAGGCAGAAGGATTACAAGGATGGCAGATACAGTCAGGTTGTTTCTAACCAGCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTAAAGAAGATCAGAAACCATCGTGGTCTTCGACATTACTGGGGTTTGAGAGTGCGTGGACAGCACACCAAGACTACTGGACGTAGGGGAAAGACTGTTGGTGTGTCGAAGAAGCGTTAA

Protein sequence

MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo24227.1	Spo24227.1	mRNA

Homology

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BLAST of Spo24227.1 vs. NCBI nr
Match: gi|902221303|gb|KNA18890.1| (hypothetical protein SOVF_066930 [Spinacia oleracea])

HSP 1 Score: 307.0 bits (785), Expect = 1.800e-80
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1

		  
Query: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60
           MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60

Query: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120
           NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH
Sbjct: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Spo24227.1 vs. NCBI nr
Match: gi|731374327|ref|XP_010666932.1| (PREDICTED: 40S ribosomal protein S18 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 298.1 bits (762), Expect = 8.600e-78
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 1

		  
Query: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60
           MSLVANE+FQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT
Sbjct: 1   MSLVANEEFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60

Query: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120
            AEL+ LMTVVANPRQFKVPDWFLNRQKDYKDGRYSQV+SNQLDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVLSNQLDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Spo24227.1 vs. NCBI nr
Match: gi|731361198|ref|XP_010692226.1| (PREDICTED: 40S ribosomal protein S18-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 296.2 bits (757), Expect = 3.300e-77
Identity = 145/152 (95.39%), Postives = 150/152 (98.68%), Query Frame = 1

		  
Query: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60
           MSLVANE+FQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT
Sbjct: 1   MSLVANEEFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60

Query: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120
            AEL+ LMTVVANPRQFK+PDWFLNRQKDYKDGR+SQV+SNQLDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMTVVANPRQFKIPDWFLNRQKDYKDGRFSQVLSNQLDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Spo24227.1 vs. NCBI nr
Match: gi|1012247114|ref|XP_015942550.1| (PREDICTED: 40S ribosomal protein S18 [Arachis duranensis])

HSP 1 Score: 291.2 bits (744), Expect = 1.000e-75
Identity = 142/152 (93.42%), Postives = 149/152 (98.03%), Query Frame = 1

		  
Query: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60
           MSLVANEDFQHILR+LNTNVDGKQKIMFAMTSIKGIGRR+ANICCKKADIDMNKRAGEL+
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFAMTSIKGIGRRFANICCKKADIDMNKRAGELS 60

Query: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120
            AEL+ LMTVVANPRQFK+PDWFLNR+KDYKDG+YSQVVSN LDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Spo24227.1 vs. NCBI nr
Match: gi|922352409|ref|XP_013452021.1| (ribosomal protein S13P/S18e [Medicago truncatula])

HSP 1 Score: 290.4 bits (742), Expect = 1.800e-75
Identity = 141/152 (92.76%), Postives = 149/152 (98.03%), Query Frame = 1

		  
Query: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60
           MSLVANE+FQHILR+LNTNVDGKQKI FAMTSIKGIGRR+ANICCKKAD+DMNKRAGELT
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIQFAMTSIKGIGRRFANICCKKADVDMNKRAGELT 60

Query: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120
            AELE +MTVVANPRQFKVPDWFLNR+KDYKDG++SQVVSNQLDMKLRDDLERLKKIRNH
Sbjct: 61  AAELENIMTVVANPRQFKVPDWFLNRKKDYKDGKFSQVVSNQLDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Spo24227.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHD4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_063420 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.300e-80
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1

		  
Query: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60
           MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60

Query: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120
           NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH
Sbjct: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Spo24227.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B411_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_005520 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 6.000e-78
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 1

		  
Query: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60
           MSLVANE+FQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT
Sbjct: 1   MSLVANEEFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60

Query: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120
            AEL+ LMTVVANPRQFKVPDWFLNRQKDYKDGRYSQV+SNQLDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVLSNQLDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Spo24227.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BJ24_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g019050 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.300e-77
Identity = 145/152 (95.39%), Postives = 150/152 (98.68%), Query Frame = 1

		  
Query: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60
           MSLVANE+FQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT
Sbjct: 1   MSLVANEEFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60

Query: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120
            AEL+ LMTVVANPRQFK+PDWFLNRQKDYKDGR+SQV+SNQLDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMTVVANPRQFKIPDWFLNRQKDYKDGRFSQVLSNQLDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Spo24227.1 vs. UniProtKB/TrEMBL
Match: G7IEW7_MEDTR (Ribosomal protein S13P/S18e OS=Medicago truncatula GN=MTR_6g043210 PE=2 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.200e-75
Identity = 141/152 (92.76%), Postives = 149/152 (98.03%), Query Frame = 1

		  
Query: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60
           MSLVANE+FQHILR+LNTNVDGKQKI FAMTSIKGIGRR+ANICCKKAD+DMNKRAGELT
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIQFAMTSIKGIGRRFANICCKKADVDMNKRAGELT 60

Query: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120
            AELE +MTVVANPRQFKVPDWFLNR+KDYKDG++SQVVSNQLDMKLRDDLERLKKIRNH
Sbjct: 61  AAELENIMTVVANPRQFKVPDWFLNRKKDYKDGKFSQVVSNQLDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Spo24227.1 vs. UniProtKB/TrEMBL
Match: B7FH21_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.600e-75
Identity = 141/152 (92.76%), Postives = 149/152 (98.03%), Query Frame = 1

		  
Query: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60
           MSLVANE+FQHILR+LNTNVDGKQKI FAMTSIKGIGRR+ANICCKKAD+DMNKRAGELT
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIQFAMTSIKGIGRRFANICCKKADVDMNKRAGELT 60

Query: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120
            AELE +MTVVANPRQFKVPDWFLNR+KDYKDG++SQVVSNQLDMKLRDDLERLKKIRNH
Sbjct: 61  VAELENIMTVVANPRQFKVPDWFLNRKKDYKDGKFSQVVSNQLDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Spo24227.1 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.800e-75
Identity = 137/152 (90.13%), Postives = 147/152 (96.71%), Query Frame = 1

		  
Query: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60
           MSLVANE+FQHILR+LNTNVDGKQKIMFA+TSIKGIGRR ANI CKKAD+DMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120
            AE++ LMT+VANPRQFK+PDWFLNRQKDYKDG+YSQVVSN LDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Spo24227.1 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.500e-66
Identity = 117/152 (76.97%), Postives = 141/152 (92.76%), Query Frame = 1

		  
Query: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60
           MSLV  E FQHILR++NTN+DG++KIMFA+TSIKG+GRRY+NI CKKADID++KRAGEL+
Sbjct: 1   MSLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELS 60

Query: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120
           + E+E L+T++ NPRQ+K+PDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKIR H
Sbjct: 61  DEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]

BLAST of Spo24227.1 vs. ExPASy Swiss-Prot
Match: RS18_ARGIR (40S ribosomal protein S18 OS=Argopecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.900e-64
Identity = 113/152 (74.34%), Postives = 140/152 (92.11%), Query Frame = 1

		  
Query: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60
           M+L+  E FQHILR++NTN+DGK+KIMFAMT+IKG+GRRYAN+ CKKAD+D+ KRAGEL+
Sbjct: 1   MALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELS 60

Query: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120
             E+E ++T+++NPRQ+K+P+WFLNRQKD KDG+YSQV+SN LD KLR+DLERLKKIR H
Sbjct: 61  EDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRG+TVGV+KK+
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGRTVGVAKKK 152

[Close]

BLAST of Spo24227.1 vs. ExPASy Swiss-Prot
Match: RS18_SPOFR (40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 7.800e-63
Identity = 111/152 (73.03%), Postives = 137/152 (90.13%), Query Frame = 1

		  
Query: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60
           MSLV  + FQHILR++NTN+DGK+K+MFAMT+IKG+GRRY+NI  KKADID++KRAGE T
Sbjct: 1   MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 60

Query: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120
             E+E ++T+++NPRQ+K+PDWFLNRQKD  DG+YSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61  EEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RG+RHYWGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]

BLAST of Spo24227.1 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 7.800e-63
Identity = 113/152 (74.34%), Postives = 138/152 (90.79%), Query Frame = 1

		  
Query: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60
           MSLV  E FQHILR+LNTN+DG++KI FA+T+IKG+GRRYA++  +KADID+NKRAGELT
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELT 60

Query: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120
             E+E ++T++ NPRQ+K+PDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKIR H
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]

BLAST of Spo24227.1 vs. TAIR (Arabidopsis)
Match: AT1G22780.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 283.1 bits (723), Expect = 1.000e-76
Identity = 137/152 (90.13%), Postives = 147/152 (96.71%), Query Frame = 1

		  
Query: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60
           MSLVANE+FQHILR+LNTNVDGKQKIMFA+TSIKGIGRR ANI CKKAD+DMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120
            AE++ LMT+VANPRQFK+PDWFLNRQKDYKDG+YSQVVSN LDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Spo24227.1 vs. TAIR (Arabidopsis)
Match: AT1G34030.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 283.1 bits (723), Expect = 1.000e-76
Identity = 137/152 (90.13%), Postives = 147/152 (96.71%), Query Frame = 1

		  
Query: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60
           MSLVANE+FQHILR+LNTNVDGKQKIMFA+TSIKGIGRR ANI CKKAD+DMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120
            AE++ LMT+VANPRQFK+PDWFLNRQKDYKDG+YSQVVSN LDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Spo24227.1 vs. TAIR (Arabidopsis)
Match: AT4G09800.1 (S18 ribosomal protein)

HSP 1 Score: 283.1 bits (723), Expect = 1.000e-76
Identity = 137/152 (90.13%), Postives = 147/152 (96.71%), Query Frame = 1

		  
Query: 1   MSLVANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT 60
           MSLVANE+FQHILR+LNTNVDGKQKIMFA+TSIKGIGRR ANI CKKAD+DMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  NAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNH 120
            AE++ LMT+VANPRQFK+PDWFLNRQKDYKDG+YSQVVSN LDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

The following BLAST results are available for this feature:

BLAST of Spo24227.1 vs. NCBI nr
BLAST of Spo24227.1 vs. UniProtKB/TrEMBL
BLAST of Spo24227.1 vs. ExPASy Swiss-Prot
BLAST of Spo24227.1 vs. TAIR (Arabidopsis)

BLAST of Spo24227.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902221303\|gb\|KNA18890.1\|	1.8e-80	100.	hypothetical protein SOVF_0669...	[more]
gi\|731374327\|ref\|XP_010666932.1\|	8.6e-78	96.7	PREDICTED: 40S ribosomal prote...	[more]
gi\|731361198\|ref\|XP_010692226.1\|	3.3e-77	95.3	PREDICTED: 40S ribosomal prote...	[more]
gi\|1012247114\|ref\|XP_015942550.1\|	1.0e-75	93.4	PREDICTED: 40S ribosomal prote...	[more]
gi\|922352409\|ref\|XP_013452021.1\|	1.8e-75	92.7	ribosomal protein S13P/S18e [M...	[more]

BLAST of Spo24227.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9RHD4_SPIOL	1.3e-80	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8B411_BETVU	6.0e-78	96.7	Uncharacterized protein OS=Bet...	[more]
A0A0J8BJ24_BETVU	2.3e-77	95.3	Uncharacterized protein OS=Bet...	[more]
G7IEW7_MEDTR	1.2e-75	92.7	Ribosomal protein S13P/S18e OS...	[more]
B7FH21_MEDTR	1.6e-75	92.7	Putative uncharacterized prote...	[more]

BLAST of Spo24227.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
RS18_ARATH	1.8e-75	90.1	40S ribosomal protein S18 OS=A...	[more]
RS18_BRABE	7.5e-66	76.9	40S ribosomal protein S18 OS=B...	[more]
RS18_ARGIR	1.9e-64	74.3	40S ribosomal protein S18 OS=A...	[more]
RS18_SPOFR	7.8e-63	73.0	40S ribosomal protein S18 OS=S...	[more]
RS18_DANRE	7.8e-63	74.3	40S ribosomal protein S18 OS=D...	[more]

BLAST of Spo24227.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3

Position :

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Match Name	E-value	Identity	Description
AT1G22780.1	1.0e-76	90.1	Ribosomal protein S13/S18 fami...	[more]
AT1G34030.1	1.0e-76	90.1	Ribosomal protein S13/S18 fami...	[more]
AT4G09800.1	1.0e-76	90.1	S18 ribosomal protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001892	Ribosomal protein S13	HAMAP	MF_01315	Ribosomal_S13_S18	coord: 12..151 score: 22
IPR001892	Ribosomal protein S13	PIR	PIRSF002134	RPS13p_RPS13a_RPS18e_RPS13o	coord: 4..152 score: 6.7
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 14..142 score: 1.0
IPR001892	Ribosomal protein S13	PROFILE	PS50159	RIBOSOMAL_S13_2	coord: 15..145 score: 33
IPR010979	Ribosomal protein S13-like, H2TH	unknown	SSF46946	S13-like H2TH domain	coord: 13..152 score: 1.16
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 121..134 scor
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	4.10.910.10		coord: 106..149 score: 2.0
None	No IPR available	GENE3D	1.10.8.50		coord: 12..83 score: 1.8
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 1..152 score: 2.0E
None	No IPR available	PANTHER	PTHR10871:SF6	40S RIBOSOMAL PROTEIN S18	coord: 1..152 score: 2.0E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0042545	cell wall modification
biological_process	GO:0009664	plant-type cell wall organization
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0019843	rRNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo14875	0.73	Barchart \| Table
Spo07402	0.69	Barchart \| Table
Spo03131	0.69	Barchart \| Table
Spo12191	0.69	Barchart \| Table
Spo22520	0.68	Barchart \| Table
Spo12681	0.68	Barchart \| Table
Spo17495	0.67	Barchart \| Table
Spo03701	0.67	Barchart \| Table
Spo12071	0.67	Barchart \| Table
Spo08160	0.67	Barchart \| Table
Spo25635	0.66	Barchart \| Table